TCONS_00001994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001994
Unique NameTCONS_00001994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001994 ID=TCONS_00001994|Name=TCONS_00001994|organism=Clytia hemisphaerica|type=transcript|length=472bp
TCCCTTTTaagaagtcgctgcattgaCTCGAGCATTGAAAACACAGACAC
TTTCGAACCTTCGAATCTTTccaatttcgaatgtttacttttttgtgaga
aataaaaatgaaacgttgaatttttcgaaaaagttgaagaggTGTAAGAT
GTTGGTTGAAAAGACTGAAAGAAGAAGCTGAAACTGTAGCAAAGAGAAAG
aacagaagaaagaagatggaaatttttattgtttcatctGGTTTCATTGA
CAAGACAGGCTCAACAGAGTTGTTGTGTCATTTCCAGAAAaggaaagctg
aaaaatgaccTGCATACGTggtgaaaaaaccttttttgcaaAGCGAACAT
ATTCAAGTTATGGATAATCTGGAAGAATTTATCCCTCCTCTTATTCAGTG
GAAAAGAGAACTGATTGTTTGTCGTTGTTCTTGAAATCTTGACTTGGCTG
CTCGAAAATATGTGGGTTCTGG
Run BLAST on NCBI

transcript from alignment at sc0000012:377165..377636

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001994 ID=TCONS_00001994|Name=TCONS_00001994|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at sc0000012:377165..377636 (Clytia hemisphaerica)
CCAGAACCCACATATTTTCGAGCAGCCAAGTCAAGATTTCAAGAACAACG
ACAAACAATCAGTTCTCTTTTCCACTGAATAAGAGGAGGGATAAATTCTT
CCAGATTATCCATAACTTGAATATGTTCGCTttgcaaaaaaggttttttc
accACGTATGCAggtcatttttcagctttcctTTTCTGGAAATGACACAA
CAACTCTGTTGAGCCTGTCTTGTCAATGAAACCagatgaaacaataaaaa
tttccatcttctttcttctgttCTTTCTCTTTGCTACAGTTTCAGCTTCT
TCTTTCAGTCTTTTCAACCAACATCTTACAcctcttcaactttttcgaaa
aattcaacgtttcatttttatttctcacaaaaaagtaaacattcgaaatt
ggAAAGATTCGAAGGTTCGAAAGTGTCTGTGTTTTCAATGCTCGAGtcaa
tgcagcgacttcttAAAAGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001032XLOC_001032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001994-exon-sc0000012-1491911889:377165..377636TCONS_00001994-exon-sc0000012-1491911889:377165..377636Clytia hemisphaericaexon
TCONS_00001994-exon-sc0000012-1510915933:377165..377636TCONS_00001994-exon-sc0000012-1510915933:377165..377636Clytia hemisphaericaexon
TCONS_00001994-exon-sc0000012-1575043694:377165..377636TCONS_00001994-exon-sc0000012-1575043694:377165..377636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:377165..377636 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.0613	1.56867	2.36992	4.02893	0.50488	2.3965	1.31109	0	0.110081	0.311799	0	0.429586	0.701355	0.69755	1.33945	2.17535	2.74576	1.00108	3.13756	1.56035	2.77902	3.38925	0	1.88032	1.38141	1.55599	4.17301	1.4951	2.32071	0.569841
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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