TCONS_00001997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001997
Unique NameTCONS_00001997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001997 ID=TCONS_00001997|Name=TCONS_00001997|organism=Clytia hemisphaerica|type=transcript|length=370bp
AGAGTATATCGGAGTTCATAGAGTAAAGACATAAGAAAACCGTAGTTACA
AATTCTTACATTTATCACACCCCCAGAACAACATTTTGTTAGCTCACAAG
GCTAACAAGtggaggttctaccgagatccTTAATGGGTCTTGGACCGTCG
TACTGTTCTGGGGAACCGAGAGTTACATAAAGAGAACTTAAGTTTATAAA
TGGAAGACTAGCACCTTCAAAGGTAGTCAGAATTTGATTGAAGGGAATTT
TAATATGGAACTAGACATTATGAACTTAGGACATTGTAGTAGAAATCTAT
AAAAAGCACATTCTATTGCTCTCTATTTAATTCTGAACCCCCAGGACAGT
TTTGTTAGCTTCGGCTAACA
Run BLAST on NCBI

transcript from alignment at sc0000012:415612..415981

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001997 ID=TCONS_00001997|Name=TCONS_00001997|organism=Clytia hemisphaerica|type=transcript|length=370bp|location=Sequence derived from alignment at sc0000012:415612..415981 (Clytia hemisphaerica)
TGTTAGCCGAAGCTAACAAAACTGTCCTGGGGGTTCAGAATTAAATAGAG
AGCAATAGAATGTGCTTTTTATAGATTTCTACTACAATGTCCTAAGTTCA
TAATGTCTAGTTCCATATTAAAATTCCCTTCAATCAAATTCTGACTACCT
TTGAAGGTGCTAGTCTTCCATTTATAAACTTAAGTTCTCTTTATGTAACT
CTCGGTTCCCCAGAACAGTACGACGGTCCAAGACCCATTAAggatctcgg
tagaacctccaCTTGTTAGCCTTGTGAGCTAACAAAATGTTGTTCTGGGG
GTGTGATAAATGTAAGAATTTGTAACTACGGTTTTCTTATGTCTTTACTC
TATGAACTCCGATATACTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001035XLOC_001035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001997-exon-sc0000012-1491911889:415612..415981TCONS_00001997-exon-sc0000012-1491911889:415612..415981Clytia hemisphaericaexon
TCONS_00001997-exon-sc0000012-1510915933:415612..415981TCONS_00001997-exon-sc0000012-1510915933:415612..415981Clytia hemisphaericaexon
TCONS_00001997-exon-sc0000012-1575043694:415612..415981TCONS_00001997-exon-sc0000012-1575043694:415612..415981Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:415612..415981 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05234	0.928896	1.07107	2.01895	1.18866	0.469649	1.98314	1.32614	2.8859	0.920038	2.97466	4.98476	3.55973	3.7345	0.502204	2.14695	2.31591	2.14267	0.436428	0.85125	3.87038	4.16116	0.252659	0	0.946357	4.25464	3.87424	2.45508	1.90873	0.996757
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top