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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002011 ID=TCONS_00002011|Name=TCONS_00002011|organism=Clytia hemisphaerica|type=transcript|length=2090bp
ctccctagagaatttaaagtgcaaacccatgtttccaaaactttcctagc
caacccagggcagcaaaacagaaattaataaaaagatctaaaaccattta
aaacatccaaaggttACCCTAAAGTCCATAAACAAGTTTGTATGTATCAC
CAAAAATGCAACAATATGGTGGAAATCAAcgaaaattctaacaaggaaat
tcaacaaaattatgGATATTGCACACCCAATAACTGTTTAACAAACACCA
TCATAGCAGATAAAGACACCTTACAATGTAGGAAATGTGATAGACTTGTC
CATTATGCTTGCTCTGAGCTCCCGGCCTATAAGATTCAGCTTTGTCTGCA
ATATAAAAGCCGGCGCTTCGAATGTGGAAATTGTGTTACAATAACGCCAC
TCTTACCTGAGAGGATTCAAACAAGCAGACAAAAAGCTCGCAGTAACATC
ACAACGAAAGAAGCAGATAAAGATGAACATCATGAGTTGAAATTAGGTTT
CTAGAAAGGAAAGTCGAGAAgctaatgaataaaaaagacGTCAACAAAGA
ACGGAACAACAAACGCAGAAATAAATAACACAATCATATGCAGAAGTCAC
CAAAGAAGATCTACAAAAACAAGAGGTGACCAtaaaaagtttcatcaaat
cAGTGAACGAAGAGGAGCGTTGGCTCAAATCAACCAAGTGCAACATCACG
GTGCATGATTTAGGTGAAAACAAGCACGAAAACAAAGAAGAGCAACGAGT
TGGCAACAAAGATTTTATATAAAGAATACTGAAACAACAAATGGGTTTCG
ATGTGACGATAATCAAGGTAGAAGGCATAGGTGCTCGTAAAGATGAAATG
TATACAAATGAACGATGGAGACCATTAAAAGTTACTCTCGAGAGTGAAGA
AGAAAGGATTAGAATACTTGCATCAGCCCACAAACTAGATAAAGTTGATT
TCAGAGTAtcagacgatttttcaaggaaagaacgcaagataataaaacaa
tagcatcataaagcaaaagaaaaaacatcgaaagaaaaagacaagagtca
taatatggaaagtgagaggtagtcctaggactaaactctgtttaaagaaa
tttacgacgGAAACAACATGATTGTAAGAAGAGTCGGTTAGAGGCCCAGG
TGTCTAACTGTAAGACTCTAAACAAACAGAATTGACAAACTATtggaatg
ataagatctataaattgtaaagatgtaagattgtttcataggggtcaata
gacctgagaaatacacttctataaataaatatatccaaccatgttttctt
ggaaaatgaacttgcgtctgttttcttctttttcatattttcatgtaaca
gaaagctgtaTCTTCACAAGTGGAGGATTATcctatttttgtttcagaat
tgctccgcgccATGTAGATCGGCCCTTACGATTTTAGCAATGTGAGTGCA
AGCAAGCAGACTGCATTCTGATTTGAGAAgacaaatcgctctagggagac
caggctgtaaaccagaacataaaatattgaaaactaGACTGtcaaatagt
ttacagcctggatatccaggctataatCATATGTACaataatgattgaaa
aatttgaaatttgacgtaaaaagttaaaaagcgagataggaataatatga
taGTTGGAATAACTAattgaaaaaggatttttcctctctgaccactaagc
aaagaaaaatatttttgacatttctattattttcagcTCTTTAAGGGTGT
CAGAATAAgatagacgagggatgtcgacattagaccaagttatgcCCTAC
ATGTCAAGATGAAAACATTAATTTCCCTCACACAAATGAAACAGATGAAG
CTCCAATAAGGAATTCACCTACACAGATCACTAAAGCTGCTAACGCCACT
GAATCCCTTCAAATAAAACCCAACCCACTCCAAGAAATACACTCCTTTGC
ATTCCAATCACTCAAGATTTTAATAATGACAAACAATTTTTACTCAAATA
ATATACctccaaaaatgttttcatcCAAGAAGAGATCCAAACCAAGAGAC
ATGGGAATTCTTATATGTAAaagaaagaaactgaaaaaag Run BLAST on NCBI protein sequence of TCONS_00002011-protein >TCONS_00002011-protein ID=TCONS_00002011-protein|Name=TCONS_00002011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MYHQKCNNMVEINENSNKEIQQNYGYCTPNNCLTNTIIADKDTLQCRKCD
RLVHYACSELPAYKIQLCLQYKSRRFECGNCVTITPLLPERIQTSRQKAR
SNITTKEADKDEHHELKLGF Run BLAST on NCBI transcript from alignment at sc0000012:642528..644617 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002011 ID=TCONS_00002011|Name=TCONS_00002011|organism=Clytia hemisphaerica|type=transcript|length=2090bp|location=Sequence derived from alignment at sc0000012:642528..644617 (Clytia hemisphaerica)
cttttttcagtttctttcttTTACATATAAGAATTCCCATGTCTCTTGGT
TTGGATCTCTTCTTGgatgaaaacatttttggagGTATATTATTTGAGTA
AAAATTGTTTGTCATTATTAAAATCTTGAGTGATTGGAATGCAAAGGAGT
GTATTTCTTGGAGTGGGTTGGGTTTTATTTGAAGGGATTCAGTGGCGTTA
GCAGCTTTAGTGATCTGTGTAGGTGAATTCCTTATTGGAGCTTCATCTGT
TTCATTTGTGTGAGGGAAATTAATGTTTTCATCTTGACATGTAGGgcata
acttggtctaatgtcgacatccctcgtctatcTTATTCTGACACCCTTAA
AGAgctgaaaataatagaaatgtcaaaaatatttttctttgcttagtggt
cagagaggaaaaatcctttttcaatTAGTTATTCCAACtatcatattatt
cctatctcgctttttaactttttacgtcaaatttcaaatttttcaatcat
tattGTACATATGattatagcctggatatccaggctgtaaactatttgaC
AGTCtagttttcaatattttatgttctggtttacagcctggtctccctag
agcgatttgtcTTCTCAAATCAGAATGCAGTCTGCTTGCTTGCACTCACA
TTGCTAAAATCGTAAGGGCCGATCTACATggcgcggagcaattctgaaac
aaaaataggATAATCCTCCACTTGTGAAGAtacagctttctgttacatga
aaatatgaaaaagaagaaaacagacgcaagttcattttccaagaaaacat
ggttggatatatttatttatagaagtgtatttctcaggtctattgacccc
tatgaaacaatcttacatctttacaatttatagatcttatcattccaATA
GTTTGTCAATTCTGTTTGTTTAGAGTCTTACAGTTAGACACCTGGGCCTC
TAACCGACTCTTCTTACAATCATGTTGTTTCcgtcgtaaatttctttaaa
cagagtttagtcctaggactacctctcactttccatattatgactcttgt
ctttttctttcgatgttttttcttttgctttatgatgctattgttttatt
atcttgcgttctttccttgaaaaatcgtctgaTACTCTGAAATCAACTTT
ATCTAGTTTGTGGGCTGATGCAAGTATTCTAATCCTTTCTTCTTCACTCT
CGAGAGTAACTTTTAATGGTCTCCATCGTTCATTTGTATACATTTCATCT
TTACGAGCACCTATGCCTTCTACCTTGATTATCGTCACATCGAAACCCAT
TTGTTGTTTCAGTATTCTTTATATAAAATCTTTGTTGCCAACTCGTTGCT
CTTCTTTGTTTTCGTGCTTGTTTTCACCTAAATCATGCACCGTGATGTTG
CACTTGGTTGATTTGAGCCAACGCTCCTCTTCGTTCACTgatttgatgaa
actttttaTGGTCACCTCTTGTTTTTGTAGATCTTCTTTGGTGACTTCTG
CATATGATTGTGTTATTTATTTCTGCGTTTGTTGTTCCGTTCTTTGTTGA
CgtcttttttattcattagcTTCTCGACTTTCCTTTCTAGAAACCTAATT
TCAACTCATGATGTTCATCTTTATCTGCTTCTTTCGTTGTGATGTTACTG
CGAGCTTTTTGTCTGCTTGTTTGAATCCTCTCAGGTAAGAGTGGCGTTAT
TGTAACACAATTTCCACATTCGAAGCGCCGGCTTTTATATTGCAGACAAA
GCTGAATCTTATAGGCCGGGAGCTCAGAGCAAGCATAATGGACAAGTCTA
TCACATTTCCTACATTGTAAGGTGTCTTTATCTGCTATGATGGTGTTTGT
TAAACAGTTATTGGGTGTGCAATATCcataattttgttgaatttccttgt
tagaattttcgTTGATTTCCACCATATTGTTGCATTTTTGGTGATACATA
CAAACTTGTTTATGGACTTTAGGGTaacctttggatgttttaaatggttt
tagatctttttattaatttctgttttgctgccctgggttggctaggaaag
ttttggaaacatgggtttgcactttaaattctctagggag Coding sequence (CDS) from alignment at sc0000012:642528..644617 >TCONS_00002011 ID=TCONS_00002011|Name=TCONS_00002011|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0000012:642528..644617 (Clytia hemisphaerica)
CTAGAAACCTAATTTCAACTCATGATGTTCATCTTTATCTGCTTCTTTCG
TTGTGATGTTACTGCGAGCTTTTTGTCTGCTTGTTTGAATCCTCTCAGGT
AAGAGTGGCGTTATTGTAACACAATTTCCACATTCGAAGCGCCGGCTTTT
ATATTGCAGACAAAGCTGAATCTTATAGGCCGGGAGCTCAGAGCAAGCAT
AATGGACAAGTCTATCACATTTCCTACATTGTAAGGTGTCTTTATCTGCT
ATGATGGTGTTTGTTAAACAGTTATTGGGTGTGCAATATCcataattttg
ttgaatttccttgttagaattttcgTTGATTTCCACCATATTGTTGCATT
TTTGGTGATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002011-exon-sc0000012-1491911889:642528..644617 | TCONS_00002011-exon-sc0000012-1491911889:642528..644617 | Clytia hemisphaerica | exon |
| TCONS_00002011-exon-sc0000012-1510915933:642528..644617 | TCONS_00002011-exon-sc0000012-1510915933:642528..644617 | Clytia hemisphaerica | exon |
| TCONS_00002011-exon-sc0000012-1575043694:642528..644617 | TCONS_00002011-exon-sc0000012-1575043694:642528..644617 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:642528..644617 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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