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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002032 ID=TCONS_00002032|Name=TCONS_00002032|organism=Clytia hemisphaerica|type=transcript|length=947bp
TGCCGCTCcccctgaaaaaaattacgtctCCTTATTAGCCCTATGTGGGG
AGGGGGGTAAGTTTGTGCGAAATAAGGATCAGAGGCTATGAAAATCTACA
AACTCTTAAAAATTCATTCTATAACTAGGCTATAGAGAGTGTTAGTGTTT
TAGTTTCTGTATTGAGCCTTTTTGACCTTTCAGAGCAAATTATTTAATGT
CTCTTGGTCCTTTCACCCATTTATACCGCATCTAAATCAAAGCTTGCTTG
TATAGTTAAAATCGTATCTTTATGACTACAATTTCCATAAGAAGTACAga
gtattttataatttttggacAATTAACAGCTCCATTTATTTGCTTCATTA
TAGCCCAACCAGTTTCCCTATAATTTTTAAGTATGAACCTTCTTTAGTGT
AATGAAAACGATCCAATGGTACAGTCTCATGGTCTGTCATTATTGTCCGT
TGTCTTTCAAGATATCGTATATCGATATATCATCTATGAGCTCGAATTGA
CATTTAGTCACTGGTCACGTGGTAAACTTTAGcccaattatCGTATAAAG
ATTACCTCACTTGGGGAGTCTCAATCAATTGCATAAAGAAAGAAGAACGT
CACGTGGGTAACCACAACCAATCATTGTAAGAGTATCACGTGATCAATGT
CAACCAATCATTGCAAAGATAAGAATATCATGTGATCACCCTCAACCAAT
CATTGAACAGAGGGATGCGTCACGTGATTTGGTAAGCTTGTAGGAGACCA
AACAGGGTACCGAGGAAAGCCATCGTTAACGTCATGCAAAATACAAACAA
ATCGAGGTGAACGTCCATCATATCATGTATCATCTGAAATATAGAAGAAA
GAGGATACATTTGACGCTCTCTAAGACCAtgttcttttttgacgtttcga
attttgacgttcacactagtttcggaaccgtttcgtttcggaatgat Run BLAST on NCBI transcript from alignment at sc0000018:21564..24645+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002032 ID=TCONS_00002032|Name=TCONS_00002032|organism=Clytia hemisphaerica|type=transcript|length=3082bp|location=Sequence derived from alignment at sc0000018:21564..24645+ (Clytia hemisphaerica)
TGCCGCTCcccctgaaaaaaattacgtctCCTTATTAGCCCTATGTGGGG
AGGGGGGTAAGTTTGTGCGAAATAAGGATCAGAGGCTATGAAAATCTACA
AACTCTTAAAAATTCATTCTATAACTAGGCTATAGAGAGTGTTAGTGTTT
TAGTTTCTGTATTGAGCCTTTTTGACCTTTCAGAGCAAATTATTTAATGT
CTCTTGGTCCTTTCACCCATTTATACCGCATCTAAATCAAAGCTTGCTTG
TATAGTTAAAATCGTATCTTTATGACTACAATTTCCATAAGAAGTACAga
gtattttataatttttggacAATTAACAGCTCCATTTATTTGCTTCATTA
TAGCCCAACCAGTTTCCCTATAATTTTTAAGTATGAACCTTCTTTAGTGT
AATGAAAACGATCCAATGGTACAGTCTCATGGTCTGTCATTATTGTCCGT
TGTCTTTCAAGATATCGTATATCGATATATCATCTATGAGCTCGAATTGA
CATTTAGTCACTGGTCACGTGGTAAACTTTAGcccaattagcctccgtct
cagaacgcggtcagaaaattttgcggataatgtcacagcgaaaatgcatc
cagtgaaatgtgagtaatgtatcatgattcaagtcgactgacattataat
acacataatacatgttacaagttctgcctacggattctcaatctcagcta
taataaaactataacatgttagtagcagacccgactgaccaatgttatgt
agcaggttggaacacgagtttctgctggaaagatgcagtttgttttcaag
ttaaatctttaaaataaaacaaactgtgtgggtttctttacttccaaaca
acctatcaatagttttggaacactccataataaaggaagatggctcttct
tgtggattgacttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
CAAATGGGATAggaaatgacttttcatgtatttcttggctctacatatga
tacctctaactttgaacacctccagaatgttgaaaaaagcattttacgag
atcagttttaattataattttcatggaaatttttaatcgacagatttggc
tttggcgtcagttttgtttggttgatgtttggtatggcaatgaaatgcca
cacagtcactctacaaatgatgcctccagccatgattggtatcagaatgt
tggaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaacgctgtcgtata
gccgaaaacgaaagtgaaactgtgaaaacgtccgcaaattcgggcccagt
cctcttccgagacggaggctaatagtCGTATAAAGATTACCTCACTTGGG
GAGTCTCAATCAATTGCATAAAGAAAGAAGAACGTCACGTGGGTAACCAC
AACCAATCATTGTAAGAGTATCACGTGATCAATGTCAACCAATCATTGCA
AAGATAAGAATATCATGTGATCACCCTCAACCAATCATTGAACAGAGGGA
TGCGTCACGTGATTTGGTAAGCTTGTAGGAGACCAAACAGGGTACCGAGG
AAAGCCATCGTTAACGTCATGCAAAATACAAACAAATCGAGGTGAACGTC
CATCATATCATGTATCATCTGAAATATAGAAGAAAGAGGATACATTTGAC
GCTCTCTAAGACCAtgttcttttttgacgtttcgaattttgacgttcaca
ctagtttcggaaccgtttcgtttcggaatgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002032-exon-sc0000018-1491911889:21564..22103 | TCONS_00002032-exon-sc0000018-1491911889:21564..22103 | Clytia hemisphaerica | exon |
| TCONS_00002032-exon-sc0000018-1510915933:21564..22103 | TCONS_00002032-exon-sc0000018-1510915933:21564..22103 | Clytia hemisphaerica | exon |
| TCONS_00002032-exon-sc0000018-1575043694:21564..22103 | TCONS_00002032-exon-sc0000018-1575043694:21564..22103 | Clytia hemisphaerica | exon |
| TCONS_00002032-exon-sc0000018-1491911889:24239..24645 | TCONS_00002032-exon-sc0000018-1491911889:24239..24645 | Clytia hemisphaerica | exon |
| TCONS_00002032-exon-sc0000018-1510915933:24239..24645 | TCONS_00002032-exon-sc0000018-1510915933:24239..24645 | Clytia hemisphaerica | exon |
| TCONS_00002032-exon-sc0000018-1575043694:24239..24645 | TCONS_00002032-exon-sc0000018-1575043694:24239..24645 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:21564..24645 + |
Blast
The following BLAST results are available for this feature:
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