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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002046 ID=TCONS_00002046|Name=TCONS_00002046|organism=Clytia hemisphaerica|type=transcript|length=2063bpRun BLAST on NCBI protein sequence of TCONS_00002046-protein >TCONS_00002046-protein ID=TCONS_00002046-protein|Name=TCONS_00002046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=595bp MVVHKVLRLYIAPEKFYIQPLGQESADGRVLEIDRVSQELLLIENHGQIPRun BLAST on NCBI transcript from alignment at sc0000018:485329..500449+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002046 ID=TCONS_00002046|Name=TCONS_00002046|organism=Clytia hemisphaerica|type=transcript|length=15121bp|location=Sequence derived from alignment at sc0000018:485329..500449+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000018:485329..500449+ >TCONS_00002046 ID=TCONS_00002046|Name=TCONS_00002046|organism=Clytia hemisphaerica|type=CDS|length=32184bp|location=Sequence derived from alignment at sc0000018:485329..500449+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002046 vs. Swiss-Prot (Human)
Match: SAC1 (Phosphatidylinositide phosphatase SAC1 OS=Homo sapiens GN=SACM1L PE=1 SV=2) HSP 1 Score: 616.305 bits (1588), Expect = 0.000e+0 Identity = 289/582 (49.66%), Postives = 402/582 (69.07%), Query Frame = 2
Query: 191 LRLYIAPEKFYIQPLGQESADGRVLEIDRVSQELLLIENHGQIPPRTAEVKEIYGIVGILHLLTGPYLVVITKRQSIGFIFDDEIFQMKDFEIIPFPKTTMHLTESQNSDNKIFLQMARNAFKTDGFYFSYNYDITHSIQRLHNTSNDFQQLPLYERADQRFVWNHHMLRLFSVQPELSAYTLPLMHGFVKIEKASIKSFIFDFILVSRRSCYRAGTRYNIRGLDDQGEAANFCETEQIIIYNGEVASYLQTRGSIPLYWSQYPTIKYKPKPKLNASKSHSDGFKKHINTQLMFYGKQILVNLIDTKGGEKILGDRFAVECKNSGYTDVHLKYIAFDFHKECSKMRWDRLSLLMDELKGSLEDMAHFRMNRAREALLEQGGVVRTNCMDCLDRTNVVQSLIARSILEKQLQDFKIIPEGCFIKDYDSFEPIFRNVWADNADMMAHQYTGTGALKTDFTRTGRRTKFGLLQDGYNSMVRYYKNNFSDGYRQDGIDLILGNYEIENSREKTQVFELNKSW-ISTLPFVLLIGFSMFTISLLIPATDFKLQLMYVLFWAFACLITLYFVVLYGTEFVDKPRLANK 1933
L+L+I PEKFY++ + D VL IDRVS E+ L +PP +A + I+GI+G +HL+ G YL+VITK+ +G F +++ DF+++ + KT +HLT+ Q DNK FL M + DGFYFS YD+TH++QRL NTS +FQ++ L ERADQRFVWN H+LR S QPE+ + LP++HGF+ + SI FD+IL+SRRSC+RAG RY +RG+D +G AANF ETEQI+ YNG AS++QTRGSIP++WSQ P +KYKP P+++ +H DGF++H ++Q++ YGKQ+++NLI+ KG EK L FA + G ++YIAFDFHKEC MRWDRLS+L+D++ +++++F ++ A + + Q GV R+NCMDCLDRTNV+QSL+AR L+ QLQ ++ G +++ D FE I++N WADNA+ A QY GTGALKTDFTRTG+RT GL+ DG+NSM+RYYKNNFSDG+RQD IDL LGNY ++ E + + W LP ++++ FSM I LL+ + L YVLFW A + T + ++ G +FVD PRL K
Sbjct: 9 LKLHITPEKFYVEACDDGADD--VLTIDRVSTEVTLAVKK-DVPP-SAVTRPIFGILGTIHLVAGNYLIVITKKIKVGEFFSHVVWKATDFDVLSYKKTMLHLTDIQLQDNKTFLAMLNHVLNVDGFYFSTTYDLTHTLQRLSNTSPEFQEMSLLERADQRFVWNGHLLRELSAQPEVHRFALPVLHGFITMHSCSINGKYFDWILISRRSCFRAGVRYYVRGIDSEGHAANFVETEQIVHYNGSKASFVQTRGSIPVFWSQRPNLKYKPLPQISKVANHMDGFQRHFDSQVIIYGKQVIINLINQKGSEKPLEQTFATMVSSLGSG--MMRYIAFDFHKECKNMRWDRLSILLDQVAEMQDELSYFLVDSAGQVVANQEGVFRSNCMDCLDRTNVIQSLLARRSLQAQLQRLGVLHVGQKLEEQDEFEKIYKNAWADNANACAKQYAGTGALKTDFTRTGKRTHLGLIMDGWNSMIRYYKNNFSDGFRQDSIDLFLGNYSVD-ELESHSPLSVPRDWKFLALPIIMVVAFSMCIICLLMAGDTWTETLAYVLFWGVASIGTFFIILYNGKDFVDAPRLVQK 583 The following BLAST results are available for this feature:
BLAST of TCONS_00002046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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