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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002061 ID=TCONS_00002061|Name=TCONS_00002061|organism=Clytia hemisphaerica|type=transcript|length=2090bpRun BLAST on NCBI protein sequence of TCONS_00002061-protein >TCONS_00002061-protein ID=TCONS_00002061-protein|Name=TCONS_00002061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp MVQYVEHDTLVNELVTLENFSPEDRLAHARKRRHEQIKSYDSRETNPNAYRun BLAST on NCBI transcript from alignment at sc0000018:731142..739568+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002061 ID=TCONS_00002061|Name=TCONS_00002061|organism=Clytia hemisphaerica|type=transcript|length=8427bp|location=Sequence derived from alignment at sc0000018:731142..739568+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000018:731142..739568+ >TCONS_00002061 ID=TCONS_00002061|Name=TCONS_00002061|organism=Clytia hemisphaerica|type=CDS|length=19656bp|location=Sequence derived from alignment at sc0000018:731142..739568+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002061 vs. Swiss-Prot (Human)
Match: PP16A (Protein phosphatase 1 regulatory subunit 16A OS=Homo sapiens GN=PPP1R16A PE=1 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 1.491e-75 Identity = 145/377 (38.46%), Postives = 222/377 (58.89%), Query Frame = 3
Query: 186 YVEHDTLVNELVTLENFSPEDRLAHARKRRHEQIKSYDSRET------NPNAYPPVHASHN---KRIRFDKNIELIEAASRNDSDEVEHLLTQAGVSADLQNEDGLSALHQAVIEDCQDVVETLIRHGADLDIKDADLWTPLHAAVACGNLDLVKYLVEKGASLVEINTDGNMAIDLVEDMEEIEIFLDEAMAGKGYDEEGLEQIRNETATLMLDELREAAQQNSYDFNVQGSHGETVMHIAAANGYDQVVEYLLDHGAKISVVDHDAWQPIHAAACWGHDKIIEILVNHGADLDALTKDGETPFDLTEDEDLQGMIIELK---------ESGTKSHKLKRSQSNSSRTLSVRRTSIVEKHKISVNDAKQEGIFRQN 1262
EH L+ E+ + S ++RL HA+KRR +Q+K + E P P A+ K++ F ++ L+EAA+RND +EV L +GVS DL NEDGL+ALHQ I+D +++V+ L+ GA+++ D++ WTPLHAA CG+L LV+ L+ GA+L+ +NTDGNM DL +D + ++ L+ AMA +G ++ +E R MLD++R Q + D + HG T++H+AAANG+ + LL+H A +S D D W+P+HAAA WG ++E+LV HGADL+A + ETP D+ DE+++ ++ELK +S +S +R+ S SR VRR S+ ++ + QE I Q
Sbjct: 1 MAEHLELLAEMPMVGRMSTQERLKHAQKRRAQQVKMWAQAEKEAQGKKGPGERPRKEAASQGLLKQVLFPPSVVLLEAAARNDLEEVRQFLG-SGVSPDLANEDGLTALHQCCIDDFREMVQQLLEAGANINACDSECWTPLHAAATCGHLHLVELLIASGANLLAVNTDGNMPYDLCDDEQTLDC-LETAMADRGITQDSIEAARAVPELRMLDDIRSRLQAGA-DLHAPLDHGATLLHVAAANGFSEAAALLLEHRASLSAKDQDGWEPLHAAAYWGQVPLVELLVAHGADLNAKSLMDETPLDVCGDEEVRAKLLELKHKHDALLRAQSRQRSLLRRRTSSAGSRGKVVRRVSLTQRTDLYRKQHAQEAIVWQQ 374 The following BLAST results are available for this feature:
BLAST of TCONS_00002061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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