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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002068 ID=TCONS_00002068|Name=TCONS_00002068|organism=Clytia hemisphaerica|type=transcript|length=2741bp
ACTACCCATCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACCAC
TACCCCTCCTCCAACTACAACCACTACCACTCCTCCAACAACAACCACTA
CCCCTCCTCCAACTACAACTACTACCCCTCCTCCAACTACAACCACTACC
CCTCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACTACTACCCC
TCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACCACTACCACTC
CTCCAACTACAACTACTACCCCTCATCCAACTACAACTACTACCCCTCCT
CCAACTGCAACTACGACCACTACCCCTTCTCCAACTACAACTACAACTAC
AACCACTACACCTCCCCCAACTACGACCACAACCACTGCCCTTCCTCCAA
CTACAACTACAACCACTACCCCTCCTCCAACTACAACTACAACCACTACC
CTTCCTCCAACTACAACCACTACACTTCCTCAAACTACAACCACTACTCT
TCCTCCAACTACAACCACAACCACTACCCCTCCTCCAACTACGACCACTT
CCCCTCCTCCAACTACGACCACTACAACCATCTCTCCTCCAACCACAACC
ACTTCCCCTCAATCAACTACTATCACTTCTCCTCCAGAAGACTCGACTCT
TACCATTACAACCTCAACGAATACAACAACACCGGAGCCTGTAATCTTCG
CAAACAAtatcatattcaaatttgttgACGATTACTCGTCTACCATCATT
AAAGCAGGTGGGAAAGATGCAGCTGAACAGGCCATTTGTGAGAATTGTCG
AGACGAGTTGAATATACCTGAGAAGGATTTCCATAATTGTTCTATCAGTG
AAGGCAGTGTCAAAGTGACGTTCATTATGAATCAAACAGCCTTCTTCGCC
AACCACACCGTTCGTAAGTTGAATATGATGGTTAAAGACGATCTCTTCCA
AGTCATGATCGGTGGCTATCGGTTGACAACAAAACCAGGATCGGTCTTGA
TAGACAGTGTCATGCAAACAGCATCATCTGATCAGCAAAACACACCATCA
CCTGTGATATCGGCAAATACCGACACCGACGGAGATGACGACGATGATGA
CGGTTCTTTGATCGCAATCGTTATCTTAATCATTATCATCATCCTAATCA
TCATTCTGGTCCTCATTTTATTGTGGATGATCAGAAAACGAAAAACTATC
ACCGATGAGAAGCCTGACGAAGAAGCAAGCAGAGGGGCAACATCCTTATC
AGCAGAGACAAACGACACTTTTGACAACGAATTGAAGAGTGAAGCAACAT
TGGGTCGAATCAACTTTGGCTCCAATTTTAACGATGATGAAGTCCATGTA
AATGAACAATGGCAGGGGCTGAGTCAGATACAATATTTGTATGGAACCGA
CAGAGAATGGAAATTCGAAGATGACGAAATATCGACAGTTGATGTGGACG
CGACGAGTCGTATTCGATTCTTGTTTGAAAGTCAGAACTCCTTACGACAT
CTTATCGACGAGATGAAAGAGGGTGACGAGGGGCGAACTATTTATGATGA
AGATGGAACTGAAATGGAAACATACCGTTCAAATGGCGGAGGGGCGGAAA
ACCCACCATCCTCGGGCGCAAGTGATGATAAtcaagatgaaaatgaaaat
aacgaTGACGAAATGGATAATACCAATGAAGAGGATAATGATAGTGATGA
TGATTCTAGTCCTCAAAGTAGTAGCCCTAACAAAGAACCACCTGCTCGGC
CACCGCCCCCAGGACGCCCGAAGCGCCCTCTTCCACCATCAAGGGATTCT
TCAAATGTGTGATAAGAACTGTTTTAAGATTAATTTTAGTAAATATTTTG
TACATAAAGAGTATTTTTATGAGTAGAgataaaaatatatgaaaatgaTA
ATGTAATATTTCTACCTTGTCATGCGTTGGTTGATTTTTAAGTCCCCCAA
AAAAGAATAGATGAAATCGTTGGCCCAATTCGAAAATTTGGTAGAAAAAG
TCTTTTTAGTTGGTACCCTCGAAGAAAATCTCCCCCTCCGTCTCTTCGAA
CATTTAGAAATCGGGAATAGGTCACAATACACTTTTTAACGATATTTTAT
CCAAATATTTATGAAAAGTCAAACTTAGAAATATGGTTAACGATACTAAA
GACTACTCATTCTCAAAATTTGTGTTCGCACAACACGAGAAGGGAAGAAA
GTTATTCTTAATTTTGCTCAAAAAGGCTTTTAATGCAAAGTCAGAAGTCT
TTtacaaatacagttgacgctctttaattcgatcttcaaagagaattgga
ttttcatcgaataaggggccttatcgaataaaggagcgtcgtttatgaga
gtttcctgttgacggggactttcaatattatcgaataagggagcctatcg
aatagtagaacgtcgaattagagggCGTCAACAATAAGTTTTTTTCCTTG
ATTACACCAAACAGACTATTAAAAATTAACTAGCCACCATTATGGAATAA
AGTGTTTGAGATACGGACTTCTTACGCAAAACCGAACGTTTTCTTCTGAA
GAAACtttggcgggaatttgatgTTACCGCTTAAAAGCGTGACTTAAGGC
ATGAAATAACATAAATTCAGGAAATATGTATTCTCGATCATTGAACggtt
attttataagaatgttccaTTTCCATTTCATCGTGGAAATTCTTGAATTC
TGGGGggaatcatcctaaaatattcttacggtattagTATA Run BLAST on NCBI transcript from alignment at sc0000018:758188..761365+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002068 ID=TCONS_00002068|Name=TCONS_00002068|organism=Clytia hemisphaerica|type=transcript|length=3178bp|location=Sequence derived from alignment at sc0000018:758188..761365+ (Clytia hemisphaerica)
ACTACCCATCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACCAC
TACCCCTCCTCCAACTACAACCACTACCACTCCTCCAACAACAACCACTA
CCCCTCCTCCAACTACAACTACTACCCCTCCTCCAACTACAACCACTACC
CCTCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACTACTACCCC
TCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACCACTACCACTC
CTCCAACTACAACTACTACCCCTCATCCAACTACAACTACTACCCCTCCT
CCAACTGCAACTACGACCACTACCCCTTCTCCAACTACAACTACAACTAC
AACCACTACACCTCCCCCAACTACGACCACAACCACTGCCCTTCCTCCAA
CTACAACTACAACCACTACCCCTCCTCCAACTACAACTACAACCACTACC
CTTCCTCCAACTACAACCACTACACTTCCTCAAACTACAACCACTACTCT
TCCTCCAACTACAACCACAACCACTACCCCTCCTCCAACTACGACCACTT
CCCCTCCTCCAACTACGACCACTACAACCATCTCTCCTCCAACCACAACC
ACTTCCCCTCAATCAACTACTATCACTTCTCCTCCAGAAGACTCGACTCT
TACCATTACAACCTCAACGAATACAACAACACCGGAGCCTGTAATCTTCG
CAAACAAtatcatattcaaatttgttgACGATTACTCGTCTACCATCATT
AAAGCAGGTGGGAAAGATGCAGCTGAACAGGCCATTTGTGAGAATTGTCG
AGACGAGTTGAATATACCTGAGAAGGATTTCCATAATTGTTCTATCAGTG
AAGGCAGTGTCAAAGTGACGTTCATTATGAATCAAACAGCCTTCTTCGCC
AACCACACCGTTCGTAAGTTGAATATGATGGTTAAAGACGATCTCTTCCA
AGTCATGATCGGTGGCTATCGGTTGACAACAAAACCAGGATCGGTCTTGA
TAGACAGTGTCATGCAAACAGCATCATCTGATCAGCAAAACACACCATCA
CCTGTGATATCGGCAAATACCGACACCGACGGAGATGACGACGATGATGA
CGGTTCTTTGATCGCAATCGTTATCTTAATCATTATCATCATCCTAATCA
TCATTCTGGTCCTCATTTTATTGTGGATGATCAGAAAACGAAAAACTATC
ACCGATGAGAAGGTTTGTAAATATCTTTTATATATCAAGAACGAGCTGAT
GTTGAACTGACAATATCAGAAGTGTCTTATCTGATCTCAATATTATCCAT
TATGTCTTTTTATAACGAATGCTCCATACAAAGCACACACAAAATAAACG
GCAAGAGGTATATTCTAGCCTTTTTAATACATAATCAAGGGCATAAATAT
CTAAATTGAGTATTAAGTAACAATTAACAAGATCTGTTTCGATTATTTTC
AGCAGCCTGACGAAGAAGCAAGCAGAGGGGCAACATCCTTATCAGCAGAG
ACAAACGACACTTTTGACAACGGTAAGGGTGATTTATTTCTCAAAGTATA
ATAGGAAAGATTCTAGATTCTAATCATTTCTGAACAATTGGTTAGCAATA
GGAGTGGGGTAGAACGCTTAGCAGTTTTCAAAGAGGCGAAAAGTGATACA
CGCTCAATTCGATGTAGGTGGCGCACGGATGTTTGCAAATGATCTAATTA
ATTCCTTTATTTACAGAATTGAAGAGTGAAGCAACATTGGGTCGAATCAA
CTTTGGCTCCAATTTTAACGATGATGAAGTCCATGTAAATGAACAATGGC
AGGGGCTGAGTCAGATACAATATTTGTATGGAACCGACAGAGAATGGAAA
TTCGAAGATGACGAAATATCGACAGTTGATGTGGACGCGACGAGTCGTAT
TCGATTCTTGTTTGAAAGTCAGAACTCCTTACGACATCTTATCGACGAGA
TGAAAGAGGGTGACGAGGGGCGAACTATTTATGATGAAGATGGAACTGAA
ATGGAAACATACCGTTCAAATGGCGGAGGGGCGGAAAACCCACCATCCTC
GGGCGCAAGTGATGATAAtcaagatgaaaatgaaaataacgaTGACGAAA
TGGATAATACCAATGAAGAGGATAATGATAGTGATGATGATTCTAGTCCT
CAAAGTAGTAGCCCTAACAAAGAACCACCTGCTCGGCCACCGCCCCCAGG
ACGCCCGAAGCGCCCTCTTCCACCATCAAGGGATTCTTCAAATGTGTGAT
AAGAACTGTTTTAAGATTAATTTTAGTAAATATTTTGTACATAAAGAGTA
TTTTTATGAGTAGAgataaaaatatatgaaaatgaTAATGTAATATTTCT
ACCTTGTCATGCGTTGGTTGATTTTTAAGTCCCCCAAAAAAGAATAGATG
AAATCGTTGGCCCAATTCGAAAATTTGGTAGAAAAAGTCTTTTTAGTTGG
TACCCTCGAAGAAAATCTCCCCCTCCGTCTCTTCGAACATTTAGAAATCG
GGAATAGGTCACAATACACTTTTTAACGATATTTTATCCAAATATTTATG
AAAAGTCAAACTTAGAAATATGGTTAACGATACTAAAGACTACTCATTCT
CAAAATTTGTGTTCGCACAACACGAGAAGGGAAGAAAGTTATTCTTAATT
TTGCTCAAAAAGGCTTTTAATGCAAAGTCAGAAGTCTTTtacaaatacag
ttgacgctctttaattcgatcttcaaagagaattggattttcatcgaata
aggggccttatcgaataaaggagcgtcgtttatgagagtttcctgttgac
ggggactttcaatattatcgaataagggagcctatcgaatagtagaacgt
cgaattagagggCGTCAACAATAAGTTTTTTTCCTTGATTACACCAAACA
GACTATTAAAAATTAACTAGCCACCATTATGGAATAAAGTGTTTGAGATA
CGGACTTCTTACGCAAAACCGAACGTTTTCTTCTGAAGAAACtttggcgg
gaatttgatgTTACCGCTTAAAAGCGTGACTTAAGGCATGAAATAACATA
AATTCAGGAAATATGTATTCTCGATCATTGAACggttattttataagaat
gttccaTTTCCATTTCATCGTGGAAATTCTTGAATTCTGGGGggaatcat
cctaaaatattcttacggtattagTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002068-exon-sc0000018-1491911889:758188..759399 | TCONS_00002068-exon-sc0000018-1491911889:758188..759399 | Clytia hemisphaerica | exon |
| TCONS_00002068-exon-sc0000018-1510915933:758188..759399 | TCONS_00002068-exon-sc0000018-1510915933:758188..759399 | Clytia hemisphaerica | exon |
| TCONS_00002068-exon-sc0000018-1575043694:758188..759399 | TCONS_00002068-exon-sc0000018-1575043694:758188..759399 | Clytia hemisphaerica | exon |
| TCONS_00002068-exon-sc0000018-1491911889:759643..759709 | TCONS_00002068-exon-sc0000018-1491911889:759643..759709 | Clytia hemisphaerica | exon |
| TCONS_00002068-exon-sc0000018-1510915933:759643..759709 | TCONS_00002068-exon-sc0000018-1510915933:759643..759709 | Clytia hemisphaerica | exon |
| TCONS_00002068-exon-sc0000018-1575043694:759643..759709 | TCONS_00002068-exon-sc0000018-1575043694:759643..759709 | Clytia hemisphaerica | exon |
| TCONS_00002068-exon-sc0000018-1491911889:759904..761365 | TCONS_00002068-exon-sc0000018-1491911889:759904..761365 | Clytia hemisphaerica | exon |
| TCONS_00002068-exon-sc0000018-1510915933:759904..761365 | TCONS_00002068-exon-sc0000018-1510915933:759904..761365 | Clytia hemisphaerica | exon |
| TCONS_00002068-exon-sc0000018-1575043694:759904..761365 | TCONS_00002068-exon-sc0000018-1575043694:759904..761365 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:758188..761365 + |
Blast
The following BLAST results are available for this feature:
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