TCONS_00002076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002076
Unique NameTCONS_00002076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002076 ID=TCONS_00002076|Name=TCONS_00002076|organism=Clytia hemisphaerica|type=transcript|length=1837bp
GTGAAcaaattgttgttgttgttgttgttatttcCAGCAGCTACCAATAT
CATCAACGAAAACGCTATCAAACACTCGAAGAATCCCATGCTTGGTCAGT
TTGTGATGCTATGTTCGCGTCAACCTCCTTCTCCTGTTCACATGAAAGAC
TGATGCTACTTCATTAACAAAGATCCTCTATTTATTTTAAACCATACAGT
TTTGATATGCCATCTTGGGAATTCTGCATGCATTTGTATCAGCAAAAAGA
TAATCATCAACATGAAAACACTGGCAATATTGTTGATATGTGTCGCGGCC
ACATCTTGTCAAAGAGATGAGCGTTGGTACCCGGTGGACAACTCTAATGA
ACTCCATGCAAGATACCCTATTGAGGATGAAGAATACAGAGAGTCGCCGT
TTGTTTCAGAAAGGAGGTATGCTGATCCTTTCCAAGAAAACGATATGATG
CCAAACTTTTACGAAGAAATCGACGAAAATGTGAAGGAGAGAATCACAGG
ATATGAAAATGTGCCAGAAGTTTTTCCGATACCCAAAGAAGTTACAACAT
CGTCTACAACTACTGGCCCTACCAAATCTGATGCGTCCACTACAACTGCC
GGCCCTACTACAACCGAATTACCAAAATCATCTCGTATGAACTTTACTGG
CCAAGTAAGACCTGGAAATCTCACTCAAAATTCGCAAATAATGAAGTCGA
AGATTTTAGACAAAGATTTTGAAGACTACCTTCAAATGAAGGAACAAGAG
GATCCCCTTTGGTTCAAAATACACAAACACAGACGACATCATAACAAGAA
TGTCAACATCAATCATAACTCGAATGTCAATATTAACTCGAATCACAACT
CCAACTCGAATCACAACTCGAACACAAATGTCAATGTCAACCACAACCAT
AACTCGAACGTGAACATAAACTCCAACCATAACTCTAACACCAATATCAA
CTCGAACCATAACTCGAACACCAATGTCAATCAAAACTCTTTTAGACCTT
TCTACATTGGCAATCTCCCAAAACAATGGCATATTTGTGGTGGATACATC
ATCGACCAATTTTCGCAATTGTGTTGTCAGGGTAACCCTGTGAACAAACA
ACCATTTTCCAAGTGCTGCGGctCTGGACTTTACAACTTGATCACGGAAG
ATTGTGTTTCTGGTTCACCCGTTGCCAAGAAGCTCCCAGAATGTGGTTCT
TCCAAAACAACGTATGATGCTTTCAAACAGTTTTGTTACCATGGCGATGT
CTACACTTATGAAAAATATATCGAATGCGACGGTTCTTTGTATTATGTAT
AATTTTGTATGtagattttcatgatttatttGAATATATATTGGAATTCT
TTTTTGGATAATTAAATGCACAAACTACGCTTTCTGTTGTATTTCAAGCC
AGTTAAAGTTCACTTCacaacatccccttctcacagactcggtgggattt
tatcagtcAGTGGAAATGGAAAtgacggaccaaaactcgatggaaattgt
tttcatcttttttatgTCTGGGAATtttaattccattgtttttagccgga
aaattcagtgggggtggaaaaaattgcaccatattttgcagtgaagatTT
GCTGATCTGATAATATTCAGCGGGAAGATATTGTGGGActatgagaaagg
ggtgttttgTATATCTTCGGCGTTTGAATGTAAGATTTTTTacctcaaaa
atattttgataagtTGAATTGTGAAGAGAAACCATTATCTATAAACCATT
AACTATATTAGACACTTTGTCGTTTATAATCCttttaaatttgaacaaat
CAAACTTTACCTGATAATACCCCTTCTCATGGACCCG
Run BLAST on NCBI

transcript from alignment at sc0000018:826925..829595+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002076 ID=TCONS_00002076|Name=TCONS_00002076|organism=Clytia hemisphaerica|type=transcript|length=2671bp|location=Sequence derived from alignment at sc0000018:826925..829595+ (Clytia hemisphaerica)
GTGAAcaaattgttgttgttgttgttgttatttcCAGCAGCTACCAATAT
CATCAACGAAAACGCTATCAAACACTCGAAGAATCCCATGCTTGGTCAGT
TTGTGATGCTATGTTCGCGTCAACCTCCTTCTCCTGTTCACATGAAAGAC
TGATGCTACTTCATTAACAAAGATCCTCTATTTATTTTAAACCATACAGT
TTTGATATGCCATCTTGGGAATTCTGCATGCATTTGTATCAGCAAAAAGG
TAATCTAATATAACTTTTATAATCATTAGAGAGCAACTCAGTTGGGAAAT
GGCATATTCCCAGAACTTGAAAAGTGAAGACGTTTTGAATCCATTGGGAA
TTTATTAGAGATAAGACAGTAATAAGGTCAACTTGTATAAATTGGAAACA
ATATTAGATTGAGCAAGCGTCGAAGAGCATCACATCAGCCACAGAAATTA
TTCGTGTAGATCAGGTAAGCTTCTAAATCCTTTCCTAAATAAAGtggaat
ttgtttatttttcaaatttaaaggtttttctTTGGATCAGAATTTAACTT
CACATTACCATTACTATtacaatcatgaaaaataaattatactTCTATGT
TTCCAGATAATCATCAACATGAAAACACTGGCAATATTGTTGATATGTGT
CGCGGCCACATCTTGTCAAAGAGATGAGCGTTGGTACCCGGTGGACAACT
CTAATGAACTCCATGCAAGATACCCTATTGAGGATGAAGAATACAGAGAG
TCGCCGTTTGTTTCAGAAAGGAGGTATGCTGATCCTTTCCAAGAAAACGA
TATGATGCCAAACTTTTACGAAGAAATCGACGAAAATGTGAAGGAGAGAA
TCACAGGATATGAAAATGTGCCAGAAGTTTTTCCGATACCCAAAGAAGTT
ACAACATCGTCTACAACTACTGGCCCTACCAAATCTGATGCGTCCACTAC
AACTGCCGGCCCTACTACAACCGAATTACCAAAATCATCTCGTATGAACT
TTACTGGCCAAGTAAGACCTGGAAATCTCACTCAAAATTCGCAAATAATG
AAGTCGAAGATTTTAGACAAAGATTTTGAAGACTACCTTCAAATGAAGGA
ACAAGAGGATCCCCTTTGGTTCAAAATACACAAACACAGACGACATCATA
ACAAGAATGTCAACATCAATCATAACTCGAATGTCAATATTAACTCGAAT
CACAACTCCAACTCGAATCACAACTCGAACACAAATGTCAATGTCAACCA
CAACCATAACTCGAACGTGAACATAAACTCCAACCATAACTCTAACACCA
ATATCAACTCGAACCATAACTCGAACACCAATGTCAATCAAAACTCTTTT
AGACCTTTCTACATTGGCAATCTCCCAAAACAATGGCATATTTGTAAGTT
ATTTCATTCACAGTACCAGAAATTTCTCTataaggaaaattttgaaagga
attacaAAAAGCATCATATTCATTGCCTGACTACCAAAAAAGTCGTTGCC
TGCTGTACTTTATAGCTTGACCAACTTATAAAAGCAATAAAAGCAATTAA
CATAGCTATGGTCAAAGGTAGTTCTCTCGTTTGTCTGAATTGAGGATTTC
GAATTgactttttgcaattttgtttCAATCAGGTGGTGGATACATCATCG
ACCAATTTTCGCAATTGTGTTGTCAGGGTAACCCTGTGAACAAACAACCA
TTTTCCAAGTGCTGCGGGTAAGTTGCATcgttttttcaaattcaattggC
TTACAATGCTTGGTTTTTCATATATTTAACTGAACGATCTATCCGATTTC
GGCCCTTTCGGAGCAGCCTTTCTTGCATTTTCATGAGTTGTTAAGGcttt
agaaaacaaaacaagGATTGCGCTTATGAAAATGGATTTATGTGGAATGG
ATTCCACAGATCAGCAATACTTTTTAAAACCAttctatttcaattttatt
ttcagctCTGGACTTTACAACTTGATCACGGAAGATTGTGTTTCTGGTTC
ACCCGTTGCCAAGAAGCTCCCAGAATGTGGTTCTTCCAAAACAACGTATG
ATGCTTTCAAACAGTTTTGTTACCATGGCGATGTCTACACTTATGAAAAA
TATATCGAATGCGACGGTTCTTTGTATTATGTATAATTTTGTATGtagat
tttcatgatttatttGAATATATATTGGAATTCTTTTTTGGATAATTAAA
TGCACAAACTACGCTTTCTGTTGTATTTCAAGCCAGTTAAAGTTCACTTC
acaacatccccttctcacagactcggtgggattttatcagtcAGTGGAAA
TGGAAAtgacggaccaaaactcgatggaaattgttttcatcttttttatg
TCTGGGAATtttaattccattgtttttagccggaaaattcagtgggggtg
gaaaaaattgcaccatattttgcagtgaagatTTGCTGATCTGATAATAT
TCAGCGGGAAGATATTGTGGGActatgagaaaggggtgttttgTATATCT
TCGGCGTTTGAATGTAAGATTTTTTacctcaaaaatattttgataagtTG
AATTGTGAAGAGAAACCATTATCTATAAACCATTAACTATATTAGACACT
TTGTCGTTTATAATCCttttaaatttgaacaaatCAAACTTTACCTGATA
ATACCCCTTCTCATGGACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001090XLOC_001090Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002076-exon-sc0000018-1491911889:826925..827173TCONS_00002076-exon-sc0000018-1491911889:826925..827173Clytia hemisphaericaexon
TCONS_00002076-exon-sc0000018-1510915933:826925..827173TCONS_00002076-exon-sc0000018-1510915933:826925..827173Clytia hemisphaericaexon
TCONS_00002076-exon-sc0000018-1575043694:826925..827173TCONS_00002076-exon-sc0000018-1575043694:826925..827173Clytia hemisphaericaexon
TCONS_00002076-exon-sc0000018-1491911889:827531..828317TCONS_00002076-exon-sc0000018-1491911889:827531..828317Clytia hemisphaericaexon
TCONS_00002076-exon-sc0000018-1510915933:827531..828317TCONS_00002076-exon-sc0000018-1510915933:827531..828317Clytia hemisphaericaexon
TCONS_00002076-exon-sc0000018-1575043694:827531..828317TCONS_00002076-exon-sc0000018-1575043694:827531..828317Clytia hemisphaericaexon
TCONS_00002076-exon-sc0000018-1491911889:828557..828641TCONS_00002076-exon-sc0000018-1491911889:828557..828641Clytia hemisphaericaexon
TCONS_00002076-exon-sc0000018-1510915933:828557..828641TCONS_00002076-exon-sc0000018-1510915933:828557..828641Clytia hemisphaericaexon
TCONS_00002076-exon-sc0000018-1575043694:828557..828641TCONS_00002076-exon-sc0000018-1575043694:828557..828641Clytia hemisphaericaexon
TCONS_00002076-exon-sc0000018-1491911889:828880..829595TCONS_00002076-exon-sc0000018-1491911889:828880..829595Clytia hemisphaericaexon
TCONS_00002076-exon-sc0000018-1510915933:828880..829595TCONS_00002076-exon-sc0000018-1510915933:828880..829595Clytia hemisphaericaexon
TCONS_00002076-exon-sc0000018-1575043694:828880..829595TCONS_00002076-exon-sc0000018-1575043694:828880..829595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:826925..829595 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
522.417	515.293	271.826	269.4	23.4947	17.5328	5.33883	6.29086	0.533864	1.48787	0.146751	0.749151	0.712438	1.65051	0.0618717	0	0	0	0	0	1.3782	0.224079	178.862	157.3	0	0	7.77833	7.36498	88.2419	97.1439
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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