TCONS_00002078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002078
Unique NameTCONS_00002078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002078 ID=TCONS_00002078|Name=TCONS_00002078|organism=Clytia hemisphaerica|type=transcript|length=1286bp
TTACGGGCTATGTTAGAGGTATAATTTCGTCAAAAGGTCTTTATGAAAGA
GAAATGCTTACTTTTTACGATCCAAGTAATGAATAGTTCCTATCTTCTTG
AACGTGAAATTCCGAGAATTCTCGCCATCAACCAAACACCACCAAAAACA
TAGACTCAGTTAACGTTAACAAACTGACAATTCCAGTACATCAAAGTGCT
TCCTTTCAAAATTCTTCTTTCTCTCGCTCACgaaagaaatattcgaaaaa
tcAAGCGAGGGAAGGCAACACACCCTGCCAAAATAGTTTCTTTTACACCA
ATTCATTCACAAAAAAAGAATAATCAAAATCGAAGAAAGAATAGGTAGCT
GCTAGCAAGGCAATACCTCCattcaaaaaattcaatcaaatcaaaCAGTT
CTTTAGTTTAGTTGAATAGTCTGTTTatgacattttgattttcttcaaat
aaGCGTCGTTCATTCAGCATTATTCAGCAGCTGTTTTCCacatctaccat
tttgaaagtCGTGCCGAGTTCTTCTTCAATATGAATTTAAAATACAACAA
TAAGAAAATGATACCTCTATATACAATAGGTATGTTACAAATacctcaga
aaaaaaatctaactaCTTTTGCTATTTACACTcaatataaatcaaaattg
ataaaaatcagtgacaaaaatcttttttggggGCTTCTTTTCGAAATGTT
AGATCCAGTTAGGCAAAAGAAACTGTTGAAATCCCcaagaaattaaattt
atatttaaaatacttcaaaattttATCGCGCTGGCTCACAAAAATAAATC
TCGTTAAATTAAATTCGTACCGGAAAATTATAAATCCACTCGTCAATCAA
ATAATATACATATCAATGTTTTTACAATACAGTTGTCTTTTAggttttta
gttttgtttacAACCTAGATAAGGTTTTGCATTGAAAGTGAGAGTTTTGG
GTTGGTTGACCAACTTGGAAACAACTTCTCATGACAAAACCTTGGACGAC
CATCAAAGAGCCAGCCACTAGAACCACTGCAACGATTACAATCTCAAGCA
TCTCTCCCTGTCGAGGGTAGACTATTATTGTAGAAAAGACGATCCAATTG
GTTAGTTGTCTTGCAGTTCACAAAAACCTCTCTAATTGACTGTATTTCGT
TTTTTATGCCACTAAAactttttaacttgaaaattttatagATTTCAACA
AGAATAACTCTGTgctttgaaaataataaaattggtAACTAGCATATCAA
ATGAAGAATCATACATATATTTTTGTGGTGTTTTTC
Run BLAST on NCBI

transcript from alignment at sc0000018:833112..834453+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002078 ID=TCONS_00002078|Name=TCONS_00002078|organism=Clytia hemisphaerica|type=transcript|length=1342bp|location=Sequence derived from alignment at sc0000018:833112..834453+ (Clytia hemisphaerica)
TTACGGGCTATGTTAGAGGTATAATTTCGTCAAAAGGTCTTTATGAAAGA
GAAATGCTTACTTTTTACGATCCAAGTAATGAATAGTTCCTATCTTCTTG
AACGTGAAATTCCGAGAATTCTCGCCATCAACCAAACACCACCAAAAACA
TAGACTCAGTTAACGTTAACAAACTGACAATTCCAGTACATCAAAGTGCT
TCCTTTCAAAATTCTTCTTTCTCTCGCTCACgaaagaaatattcgaaaaa
tcAAGCGAGGGAAGGCAACACACCCTGCCAAAATAGTTTCTTTTACACCA
ATTCATTCACAAAAAAAGAATAATCAAAATCGAAGAAAGAATAGGTAGCT
GCTAGTAANTCATTCACAAAAAAGAATAATCAAAATCGAAGAAAGAATAG
GTAGCTGCTAGCAAGGCAATACCTCCattcaaaaaattcaatcaaatcaa
aCAGTTCTTTAGTTTAGTTGAATAGTCTGTTTatgacattttgattttct
tcaaataaGCGTCGTTCATTCAGCATTATTCAGCAGCTGTTTTCCacatc
taccattttgaaagtCGTGCCGAGTTCTTCTTCAATATGAATTTAAAATA
CAACAATAAGAAAATGATACCTCTATATACAATAGGTATGTTACAAATac
ctcagaaaaaaaatctaactaCTTTTGCTATTTACACTcaatataaatca
aaattgataaaaatcagtgacaaaaatcttttttggggGCTTCTTTTCGA
AATGTTAGATCCAGTTAGGCAAAAGAAACTGTTGAAATCCCcaagaaatt
aaatttatatttaaaatacttcaaaattttATCGCGCTGGCTCACAAAAA
TAAATCTCGTTAAATTAAATTCGTACCGGAAAATTATAAATCCACTCGTC
AATCAAATAATATACATATCAATGTTTTTACAATACAGTTGTCTTTTAgg
tttttagttttgtttacAACCTAGATAAGGTTTTGCATTGAAAGTGAGAG
TTTTGGGTTGGTTGACCAACTTGGAAACAACTTCTCATGACAAAACCTTG
GACGACCATCAAAGAGCCAGCCACTAGAACCACTGCAACGATTACAATCT
CAAGCATCTCTCCCTGTCGAGGGTAGACTATTATTGTAGAAAAGACGATC
CAATTGGTTAGTTGTCTTGCAGTTCACAAAAACCTCTCTAATTGACTGTA
TTTCGTTTTTTATGCCACTAAAactttttaacttgaaaattttatagATT
TCAACAAGAATAACTCTGTgctttgaaaataataaaattggtAACTAGCA
TATCAAATGAAGAATCATACATATATTTTTGTGGTGTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001091XLOC_001091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002078-exon-sc0000018-1491911889:833112..833455TCONS_00002078-exon-sc0000018-1491911889:833112..833455Clytia hemisphaericaexon
TCONS_00002078-exon-sc0000018-1510915933:833112..833455TCONS_00002078-exon-sc0000018-1510915933:833112..833455Clytia hemisphaericaexon
TCONS_00002078-exon-sc0000018-1575043694:833112..833455TCONS_00002078-exon-sc0000018-1575043694:833112..833455Clytia hemisphaericaexon
TCONS_00002078-exon-sc0000018-1491911889:833512..834453TCONS_00002078-exon-sc0000018-1491911889:833512..834453Clytia hemisphaericaexon
TCONS_00002078-exon-sc0000018-1510915933:833512..834453TCONS_00002078-exon-sc0000018-1510915933:833512..834453Clytia hemisphaericaexon
TCONS_00002078-exon-sc0000018-1575043694:833512..834453TCONS_00002078-exon-sc0000018-1575043694:833512..834453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:833112..834453 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.132982	0.0425115	0	0	0	0	0	0	0	0	0	0	0.375042	0.438674	0	0	0	0	0.755148	4.95448	2.90921	0	3.23818	0.302745	0.133984	2.67545	0.685245	0.401922	0.116961
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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