TCONS_00002101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002101
Unique NameTCONS_00002101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002101 ID=TCONS_00002101|Name=TCONS_00002101|organism=Clytia hemisphaerica|type=transcript|length=1847bp
ATTTAAAGTCTTTTACAGGAGTAGACAACATCAGATTTCTGAgTATGATA
TGCTTGACATTGTCAGAAATGGAAGATGGAATTTCTGTACTTGTTCCAGC
TGGAAGGTCAGATTGTTACTTTCGTGAATTGAAAGTTGGAGATAGAATGG
ACCTTGAAATTCAGGTCTTAAGTGGAGGGCACATTGATATCCATATTTTA
GTATTATCGCCAACTGGCAGGATAATCTTAGACGAGCAAAGTGTCACAGA
AACAAGTActgaaatcaaaattgatgaaaatggGGCATACAAAGTTTGCT
TGGATAACACATTCAGCTTGAGATCTGATAAAGTTGTATATTTTGATTTG
GGTATTGATGAACACAATGGGACAACAGTAGATCATGCAGAATTATTTCA
ACAGATGCAATTAGAAAAAGACGAGATTGATAATACTAAGGATATTGCAA
AATCGTTGGATAAGATTGAAATGATCTTTGAAACCATCCAAGAAATGCAG
ACGAGATTCAGAGCACGATATGCTCGACACCATTATTTACAAAATGCAAA
CATGACATTAGTTCAATGGTTTTCCGGAGCTTCATGCTTCTTGATGATCA
TGGTTGGAGGACTCCAAGTGTTTTTGATTAGAAACCTTTTTAAAGAGCAG
AATGCGCAAAGAGGAATGAAAGCTGGTCTTTGATGATTGGTTATAGTGTT
CTTTTTAATAGCAAGTATGAGATCATCGTATGCATGTCCTTTAATTCACC
GATCCGTATATCTACCCTTACAAGGTATTTATCCAAGCACTTTCCTTACC
ACTATTTTGgtctgaaattgaaaaaaactaaaaaaactaaaaaaaagttC
ACTGAAATTCCAAGTTCTGTCTCAAGTGAAAGTCTTTGCCTTGACCATTT
TAATATTCTACAAGCAATGAATTTGAGGGATGAGATCTTGCCTACTGTCA
CTCACAGGAAGGATTAAAGGACAAAAACACGAATTCAAaagaaataatta
gaaattcttttaaaatagTCGTAATATATGGGTCTCAACCAAACCTAAAC
AAAGCATCCATAGATTTTTcatcaagaatttttttaaacacccccttctc
tcagacccggtaggattttttcagccagtggggatagaaataacggactg
aaactcgatggggattgatattcccatattttttatggctggtgatttca
attcttttgttttcaagtcagaaaattcagtgggggttGGAAAAAGAGCA
TCATATTTtgtagtgaggattggtttatttgattattttcagtggggaca
aaaattggaggataatcttccactggggacgatattttggacaatttttc
aagtgggaaggggttccagtgggtctgtgagaagggggtgttttaaagCA
TGTTCTGTTGTAATTTTGTGAACCATCTTTAGggttttttatgaatttta
gcAATTTCAAGGTTTCCACGATAAGCAATTTTTATATTCTTTATANgggg
ttccagtgggtctgtgagaagggggtgttttaaagCATGTTCTGTTGTAA
TTTTGTGAACCATCTTTAGggttttttatgaattttagcAATTTCAAGGT
TTCCACGATAAGCAATTTTTATATTCTTTATAAATATACCTAGCATTAAT
tgtaatttataattttttcataACGATATTACTTACAATTTCtatcaatt
ttgtatttttttgctaCCGAATACTGTTAACAATTTCAAAGAATAGTCGA
AGTTATAGAAAAGATATTTTATAGAATTTAATATAATTTGTTCAATGttc
aaaattataattttctcCCATCTCGATATTAGGAACTAAAACGTCAA
Run BLAST on NCBI

protein sequence of TCONS_00002101-protein

>TCONS_00002101-protein ID=TCONS_00002101-protein|Name=TCONS_00002101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
LKSFTGVDNIRFLSMICLTLSEMEDGISVLVPAGRSDCYFRELKVGDRMD
LEIQVLSGGHIDIHILVLSPTGRIILDEQSVTETSTEIKIDENGAYKVCL
DNTFSLRSDKVVYFDLGIDEHNGTTVDHAELFQQMQLEKDEIDNTKDIAK
SLDKIEMIFETIQEMQTRFRARYARHHYLQNANMTLVQWFSGASCFLMIM
VGGLQVFLIRNLFKEQNAQRGMKAGL
Run BLAST on NCBI

transcript from alignment at sc0000018:10386..17267-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002101 ID=TCONS_00002101|Name=TCONS_00002101|organism=Clytia hemisphaerica|type=transcript|length=6882bp|location=Sequence derived from alignment at sc0000018:10386..17267- (Clytia hemisphaerica)
ATTTAAAGTCTTTTACAGGAGTAGACAACATCAGATTTCTGAGGTAAAAT
GTTTGTTTTGAAATTCCTGGGATTTCCACAATTATCTACCGTGAGCGTGA
GATCTGGTAAAACTTGCATCAGTGGAGGCTAACATGCATAGCCCTTAAAT
GAATGCCTTGGCTGGTCATTAAAATACAACTGCATCAAAATGCAGCTCCG
CTCGCAGCTCTACTCTACCATTCTTGTTTTGATTTAACTTTGTATTTTTA
ATGACCAGCCAGGTCTTTCATTTCAGGGCTATTATATGCATGTTAGCCTA
CTGATGCAAGTTATCCGATTTCACGGTACTGTAGTGTAGCTACAAAACAA
TTGAAACTCCTGATTTCCAATACAAAATCAATTTTTTGTGGAAAATCTGG
AATATATCTTTGGCCAGGCCCAAAAGACCTTTTTTCAAAGAAGACGTCCT
GTTGAATAATTATGTAGTCCAGCCATAAAAACAAAGATAGAGCCTTGCAT
AATTACCGTATCATGCATATTGTAATAATTATGCATGGTTTTATCATTGT
TTTTCTGCTGGCACGAGGCAAATGCCGCTGTAAAAGCTACCGTAAATTTG
ATTATTCCTTGTTTACCGCGGCAAATTTGCCGCGGTAAATTTTCTGAAAA
ATGTTAATAAAGTCAAAGAAACTTCAAAAGTGCCAAATCGTTTAAGTTCT
TTGTTTTCTGATCATTTAGGAGACGTCTAGTACTTTGGATGACATAGGCT
GTATACTCCTATATATTTCTCAAGTCAAAATTCAATAAACAAAAAAATGC
CGCAGCAAAATGCTGTTTTGCCTCAGCAAATTTGATAAAGAGCATTTTGC
CGCGGCAGAAAAAATGACGAGGCAAAATAAGCTGAATTACCAGGGCTAGT
AATAGTTATGAAAACAAATTTGTCGTCAAAGAGATTTAACAGTAAGTGAA
AATACAGGCCAGAATATCAACAGTTCCATTTTTTAACCAATCGTTCCAAG
TTAGAGCAGTCGATGGTACAAAGGTATAAATTTTTTCTGTACGTTAATAA
TGTCAGGTGTGAAATTAATAATGGCTCTTTGAGTCTCAAATGAAATTTAT
TTGATGCGTGTCCAACAATTTTAAAGTCATTAATTGAGCAATTATTTCCC
TTGTCATGGCAATGTTTCCTAATGGCGGTCGCATAAGTGTCGTTGTATTT
CAATTCTTTGCTCGTCAGAAGAGAGATTTATACAAAATCAGGGAATCGAA
ATTTCTAGACAATCGTTCTTTTAAATCGTTTGTTAACAATTTTGTAATAA
AAAGTTATGTTTTGTATAAGAAGCAAATTTATTTGGTTCCATTGGTTCAG
TGTATCAAATCATTCAGTTTAGTTTACACTTTGGTATCTTCATTGTGTCA
CAGCGATAGGTTTGTTTTTATTTTAGTTTGTATCTTTGAAAGACCCCATC
AGATTTAGGCAGGGCTGTCGGATTTAAGACCACTCACGGTAGATGTTTTG
GTGAATGTGACACTCTTTTGAATAACTAGAGATAGAGACAAGATAATTTA
TCATGTTTTTATTGGCTGAGGAAAAGTAATGTATGTGGAGTAATTAGGCC
AGGCCCAATTAATTGTTTGGTTCGTGTCCTAGAAGCTTTGAGAAATGGAT
TGGTTGGTAGCTAAAATTGGACCTTTTTTTCATTTTCCCACCAAAAACCT
CAATTTTTTTAATTCCTCAAGCAAACGTGCAATCCTGGAATCCAACCGCA
AATGTAAAGAAATAGCCTAAAGCCCGGATCCACAAAGGCATATGCTGTGA
CCGCAAGATAACTTCTACACTTGGAAATTTAGGCGTTTGCGGTGTGTGCT
TAAAGGAATATAGCTGTGGCTCTCTGCTTTTAGGTGCTTTATATTTGTTT
TTAAGTACGGGTTACACCAGGACATGTTCTGTGCGCAAAGTGGATGTTGT
TTATAGAAGAATCAAAGCAGTCAGTTAATAGAGAACTGCAGAGATGTAGG
TTTAGGCGCTGTGGTATATAGTGGTCATTGACCTTGATTGCTGCACAATC
GACTGAGGTTCAATTCCCACTCGGAGCGGTTCACTTGGCAAGTGAATGAA
CCTTCGCCCGGGTCAGCCCATGCCATGTAAGGGGAATTGATTAGTCAGTT
CAAGGTGCTGACGGGTGCTAATTGAAAGCGCCTATAGTTGCGAAAATGAG
CCTCCTGCGACTAAGAAATAGTTATCATGTGAAAAGGAGGAAAATTTATT
TGATTATTCCGACTCAAAGTGAAACACATTTTCTCAAAAATTTAGAGTCG
GTCGGAGGACATGAACCAAACTATCAATTGGGCCTGGCCTTAGTTATTCA
ATAGTCGAACTCAATTTCGATTTAAAAAATTCTCAAATTTATAGGCCTCT
AAGAAAATAAATTTTGGCGAGAATTAGCTTTAGCAAACAACCCATTTTTG
TTCAATTATGTTTTAGCTGAAAAAAGAGGAAAAGAAGGGTTTTTAGGAGA
AATAGAGATTAAATTGAAAGAAATTTCAATTTAGCAATTCACAATCTCAA
GGGGACATGTTCATAAAAAAAGGCAAGCCCTGTGACATTCAAAAAATATG
AAAAAATCATTTTTTGTTGATAAAACCTTCAAAATAGCTTCTAGATCAAT
AAAATTTCTGGGGTAAAAAGGTAACACAGGTCCAAAGGCACTAGAGTTGA
AAGAATTTGGATTTTTAGGTTATTTTGCTGAAAATGGCTAAAAATGTAAC
ATTTTCATTAAAAATGACCTAAATTTTTATTTCAGGTGAAAATAATTAAA
GCAAGGTCTGGAAATAAAACTTTAGTGTGTTAACTACCCGCTGTTGTTAT
TTGCGGAGATTGCACATCGTTAAACCAAAGGTAATGGCTAAAGAAGTAAC
ATGTTACAATATTAGCCGGTTTGTCCTATTATTTGTCAGTAAAGTCATAA
TATTGTCTCAAACATAGCATGAAGTCTGCTTTTTGATAAAGGATTCATTG
ATAAATCAACAAAATCTGGCTTAAAAGGAACAGAACATTGCAACCTTTAA
GCCTTGTTACACCATTAGCCAATCAATTTTTTAACCCAAATGCATTGCCA
ATAACATCCCCTTCAACCCCCTAATGATGCCAATGTACCATTTTTTATGT
AAGTATTACCTCACAGCTGTTTTAGAAATCCTTAGCCAATTTTTTTAAAA
ATTGCAATGTTACATCATTAGCCAGCTTCTTGCAAGCTTCAAATTATCAT
AATTTGAGATATACTAGAGCCATTTTTTTAAGAGTCTTCAGGGTGTGATA
CCTTACCCTCTTGGATTTTGCTGAAATTTAGACCAAATGATCTATCACAA
AAGAAAATAAGACCCTGAAAATCTCACCTTGATATCGCAAAGTAGTTTTT
AAGATACAGCGTCTCAAAGATAGGCTACTAAGCGAAAATTGACCCCTGAA
AATCATGAACTCTGGTGGGGAGCAGATTTTGAAAGCCAATGAATTTTTAT
TCAAGTACATTAGAAAGCTGATTTACAGTGGATTTCAAAAACTTTTTGTA
GGGAATCAGAAAAAATCAAATTGAGTCTCCAAAATTTTCCCCGAAAATCT
CTAGCACCTCCTGTAGAGGGCTTCAAACTTTGCGTAATCTGGGTATGGAA
GCACTTTTAGCTGGCTGCTGATGGTCCTTGGGACTTTTTTGAAGTAAACT
TTTGACCTGGAGTGGTTTACTGGTGGGTTTTGGCCACAAAAATAACATTT
TCAGGATACCCATCTTTGCGTAACCGTAAAAAATGGCCGAAAAAATTGCT
ATTTTGGCAGACCTGGAGCAAAATTCAAGATGGCGCATCTTTTTAAGGCA
ACACCAAATTTTTTTGAAACTTTCAGCAAGGCTTCCTTAGTAGGTCTTGT
TTATAGCCTCAAAAAATCTCAGTGGGCTTTTGAAGTCTCTTAAAGATATG
ATCGATTGAAAATTTGCTTAACTTCGTTGTTTTCTCCCTCTTAAAATGCT
AAATCAGGCCCACTTAAGGGCTCTAACAGTATAGTTTTTGTCAAAATATT
GGTTGATCTTCTCTAGCCAACTAATCATTGACATTAGGGGAATAACTGAA
AAAGATTTCAGGTCATTTCCATCAACAGATGACATTTTATGACTGTTTCT
TTATTTTTAAGGACAGAATATGTAAAAAAATGAGACTGGCATCTGGCCTT
TCCTACCATTCCAGAGCCCATATTTCCAGGAAACGCCTCAACCTTTCACA
ATTTGGTGAATAATAATCTTAAATATAAGCAGGTTACTTCAACTAAATGG
GTTTAACAGTACTTAATTCCTATTCAAAAACTTTTTAGACTCATTCAGAA
ATCCTACTTTGACAATAATTTGCGCTTTACCGCAAAATTTCTAAGTCCAA
GTGTTGTGATTAGCTTTAGACTGGGTGTACTTTCTATAATAATACTTTAT
TTTTTAATAATTATACAAGCTTTTACAAAAATTAAACATACTTAGAAATA
CACACACTTCAATAATCATGAAAAAGCTTATTGTTTTGATCAGTATGATA
TGCTTGACATTGTCAGAAATGGAAGATGGAATTTCTGTACTTGTTCCAGC
TGGAAGGTCAGATTGTTACTTTCGTGAATTGAAAGTTGGAGATAGAATGG
ACCTTGAAATTCAGGTAATCAATGATATTGCTTTTTTGGTGTCTTTGTTT
TGCTGATTTATCTTTCTGGAAACTCTTAATCTTTTTTAGCTAGGTCTATT
AAGAAAAAAACTGTGATTTTGTGAATTTTTGTACCCTTATCAAGACCTTT
TGTACCCTTATTTCCAAAAGTCTAGTGTTTTGAGTTGTAAACATGGATTT
TTTTTGCTGCTTTTGTGACGTTAGCAGTTAGGATGAAAGTTTCAAAAGGC
AAATGAAATAGAAATTAAAATTGATTAAAAGTGTTCTATTTTTTTATTAT
GACCAGGTCTTAAGTGGAGGGCACATTGATATCCATATTTTAGTATTATC
GCCAACTGGCAGGATAATCTTAGACGAGCAAAGTGTCACAGAAACAAGTA
CTGAAATCAAAATTGATGAAAATGGGGCATACAAAGTTTGCTTGGATAAC
ACATTCAGCTTGAGATCTGATAAAGTTGTATATTTTGATTTGGGTATTGA
TGAACACAATGGGACAACAGTAGATCATGCAGAATTATTTCAACAGATGC
AATTAGAAAAAGACGAGATTGATAATACTAAGGATATTGCAGTAAGTGAA
GCCCTCTAAAACCAATCATAACATTTTTACAAGTTTCGACTTTAACATCA
AAAAACAATTTAACGATTTTAAGTAAATGAGTACGAAAGAAATTCCGAAT
AGTACATTATATACCAATTTTAACATTTTTACGAGTTTCGACTTTGACAT
ATTTAAAAAAAGAACAAATATTTCTCAGAAAGTATAAAGTTTTCTTAACT
TTCAAATTTTTAATTTTCTTCATTTCACTCTTAGAAATCGTTGGATAAGA
TTGAAATGATCTTTGAAACCATCCAAGAAATGCAGACGAGATTCAGAGCA
CGATATGCTCGACACCATTATTTACAAAATGCAAACATGACATTAGTTCA
ATGGTTTTCCGGAGCTTCATGCTTCTTGATGATCATGGTTGGAGGACTCC
AAGTGTTTTTGATTAGAAACCTTTTTAAAGAGCAGAATGCGCAAAGAGGA
ATGAAAGCTGGTCTTTGATGATTGGTTATAGTGTTCTTTTTAATAGCAAG
TATGAGATCATCGTATGCATGTCCTTTAATTCACCGATCCGTATATCTAC
CCTTACAAGGTATTTATCCAAGCACTTTCCTTACCACTATTTTGGTCTGA
AATTGAAAAAAACTAAAAAAACTAAAAAAAAGTTCACTGAAATTCCAAGT
TCTGTCTCAAGTGAAAGTCTTTGCCTTGACCATTTTAATATTCTACAAGC
AATGAATTTGAGGGATGAGATCTTGCCTACTGTCACTCACAGGAAGGATT
AAAGGACAAAAACACGAATTCAAAAGAAATAATTAGAAATTCTTTTAAAA
TAGTCGTAATATATGGGTCTCAACCAAACCTAAACAAAGCATCCATAGAT
TTTTCATCAAGAATTTTTTTAAACACCCCCTTCTCTCAGACCCGGTAGGA
TTTTTTCAGCCAGTGGGGATAGAAATAACGGACTGAAACTCGATGGGGAT
TGATATTCCCATATTTTTTATGGCTGGTGATTTCAATTCTTTTGTTTTCA
AGTCAGAAAATTCAGTGGGGGTTGGAAAAAGAGCATCATATTTTGTAGTG
AGGATTGGTTTATTTGATTATTTTCAGTGGGGACAAAAATTGGAGGATAA
TCTTCCACTGGGGACGATATTTTGGACAATTTTTCAAGTGGGAAGGGGTT
CCAGTGGGTCTGTGAGAAGGGGGTGTTTTAAAGCATGTTCTGTTGTAATT
TTGTGAACCATCTTTAGGGTTTTTTATGAATTTTAGCAATTTCAAGGTTT
CCACGATAAGCAATTTTTATATTCTTTATANGGGGTTCCAGTGGGTCTGT
GAGAAGGGGGTGTTTTAAAGCATGTTCTGTTGTAATTTTGTGAACCATCT
TTAGGGTTTTTTATGAATTTTAGCAATTTCAAGGTTTCCACGATAAGCAA
TTTTTATATTCTTTATAAATATACCTAGCATTAATTGTAATTTATAATTT
TTTCATAACGATATTACTTACAATTTCTATCAATTTTGTATTTTTTTGCT
ACCGAATACTGTTAACAATTTCAAAGAATAGTCGAAGTTATAGAAAAGAT
ATTTTATAGAATTTAATATAATTTGTTCAATGTTCAAAATTATAATTTTC
TCCCATCTCGATATTAGGAACTAAAACGTCAA

Coding sequence (CDS) from alignment at sc0000018:10386..17267-

>TCONS_00002101 ID=TCONS_00002101|Name=TCONS_00002101|organism=Clytia hemisphaerica|type=CDS|length=2724bp|location=Sequence derived from alignment at sc0000018:10386..17267- (Clytia hemisphaerica)
AAATCGTTGGATAAGATTGAAATGATCTTTGAAACCATCCAAGAAATGCA
GACGAGATTCAGAGCACGATATGCTCGACACCATTATTTACAAAATGCAA
ACATGACATTAGTTCAATGGTTTTCCGGAGCTTCATGCTTCTTGATGATC
ATGGTTGGAGGACTCCAAGTGTTTTTGATTAGAAACCTTTTTAAAGAGCA
GAATGCGCAAAGAGGAATGAAAGCTGGTCTTTGAGTCTTAAGTGGAGGGC
ACATTGATATCCATATTTTAGTATTATCGCCAACTGGCAGGATAATCTTA
GACGAGCAAAGTGTCACAGAAACAAGTACTGAAATCAAAATTGATGAAAA
TGGGGCATACAAAGTTTGCTTGGATAACACATTCAGCTTGAGATCTGATA
AAGTTGTATATTTTGATTTGGGTATTGATGAACACAATGGGACAACAGTA
GATCATGCAGAATTATTTCAACAGATGCAATTAGAAAAAGACGAGATTGA
TAATACTAAGGATATTGCATATGATATGCTTGACATTGTCAGAAATGGAA
GATGGAATTTCTGTACTTGTTCCAGCTGGAAGGTCAGATTGTTACTTTCG
TGAATTGAAAGTTGGAGATAGAATGGACCTTGAAATTCAGTTAAAGTCTT
TTACAGGAGTAGACAACATCAGATTTCTGAGAAATCGTTGGATAAGATTG
AAATGATCTTTGAAACCATCCAAGAAATGCAGACGAGATTCAGAGCACGA
TATGCTCGACACCATTATTTACAAAATGCAAACATGACATTAGTTCAATG
GTTTTCCGGAGCTTCATGCTTCTTGATGATCATGGTTGGAGGACTCCAAG
TGTTTTTGATTAGAAACCTTTTTAAAGAGCAGAATGCGCAAAGAGGAATG
AAAGCTGGTCTTTGAGTCTTAAGTGGAGGGCACATTGATATCCATATTTT
AGTATTATCGCCAACTGGCAGGATAATCTTAGACGAGCAAAGTGTCACAG
AAACAAGTACTGAAATCAAAATTGATGAAAATGGGGCATACAAAGTTTGC
TTGGATAACACATTCAGCTTGAGATCTGATAAAGTTGTATATTTTGATTT
GGGTATTGATGAACACAATGGGACAACAGTAGATCATGCAGAATTATTTC
AACAGATGCAATTAGAAAAAGACGAGATTGATAATACTAAGGATATTGCA
TATGATATGCTTGACATTGTCAGAAATGGAAGATGGAATTTCTGTACTTG
TTCCAGCTGGAAGGTCAGATTGTTACTTTCGTGAATTGAAAGTTGGAGAT
AGAATGGACCTTGAAATTCAGTTAAAGTCTTTTACAGGAGTAGACAACAT
CAGATTTCTGAGAAATCGTTGGATAAGATTGAAATGATCTTTGAAACCAT
CCAAGAAATGCAGACGAGATTCAGAGCACGATATGCTCGACACCATTATT
TACAAAATGCAAACATGACATTAGTTCAATGGTTTTCCGGAGCTTCATGC
TTCTTGATGATCATGGTTGGAGGACTCCAAGTGTTTTTGATTAGAAACCT
TTTTAAAGAGCAGAATGCGCAAAGAGGAATGAAAGCTGGTCTTTGAGTCT
TAAGTGGAGGGCACATTGATATCCATATTTTAGTATTATCGCCAACTGGC
AGGATAATCTTAGACGAGCAAAGTGTCACAGAAACAAGTACTGAAATCAA
AATTGATGAAAATGGGGCATACAAAGTTTGCTTGGATAACACATTCAGCT
TGAGATCTGATAAAGTTGTATATTTTGATTTGGGTATTGATGAACACAAT
GGGACAACAGTAGATCATGCAGAATTATTTCAACAGATGCAATTAGAAAA
AGACGAGATTGATAATACTAAGGATATTGCATATGATATGCTTGACATTG
TCAGAAATGGAAGATGGAATTTCTGTACTTGTTCCAGCTGGAAGGTCAGA
TTGTTACTTTCGTGAATTGAAAGTTGGAGATAGAATGGACCTTGAAATTC
AGTTAAAGTCTTTTACAGGAGTAGACAACATCAGATTTCTGAGAAATCGT
TGGATAAGATTGAAATGATCTTTGAAACCATCCAAGAAATGCAGACGAGA
TTCAGAGCACGATATGCTCGACACCATTATTTACAAAATGCAAACATGAC
ATTAGTTCAATGGTTTTCCGGAGCTTCATGCTTCTTGATGATCATGGTTG
GAGGACTCCAAGTGTTTTTGATTAGAAACCTTTTTAAAGAGCAGAATGCG
CAAAGAGGAATGAAAGCTGGTCTTTGAGTCTTAAGTGGAGGGCACATTGA
TATCCATATTTTAGTATTATCGCCAACTGGCAGGATAATCTTAGACGAGC
AAAGTGTCACAGAAACAAGTACTGAAATCAAAATTGATGAAAATGGGGCA
TACAAAGTTTGCTTGGATAACACATTCAGCTTGAGATCTGATAAAGTTGT
ATATTTTGATTTGGGTATTGATGAACACAATGGGACAACAGTAGATCATG
CAGAATTATTTCAACAGATGCAATTAGAAAAAGACGAGATTGATAATACT
AAGGATATTGCATATGATATGCTTGACATTGTCAGAAATGGAAGATGGAA
TTTCTGTACTTGTTCCAGCTGGAAGGTCAGATTGTTACTTTCGTGAATTG
AAAGTTGGAGATAGAATGGACCTTGAAATTCAGTTAAAGTCTTTTACAGG
AGTAGACAACATCAGATTTCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001099XLOC_001099Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002101-exon-sc0000018-1575043694:17225..17267TCONS_00002101-exon-sc0000018-1575043694:17225..17267Clytia hemisphaericaexon
TCONS_00002101-exon-sc0000018-1575043694:12604..12724TCONS_00002101-exon-sc0000018-1575043694:12604..12724Clytia hemisphaericaexon
TCONS_00002101-exon-sc0000018-1575043694:12027..12311TCONS_00002101-exon-sc0000018-1575043694:12027..12311Clytia hemisphaericaexon
TCONS_00002101-exon-sc0000018-1575043694:10386..11783TCONS_00002101-exon-sc0000018-1575043694:10386..11783Clytia hemisphaericaexon
TCONS_00002101-exon-sc0000018-1510915933:17225..17267TCONS_00002101-exon-sc0000018-1510915933:17225..17267Clytia hemisphaericaexon
TCONS_00002101-exon-sc0000018-1510915933:12604..12724TCONS_00002101-exon-sc0000018-1510915933:12604..12724Clytia hemisphaericaexon
TCONS_00002101-exon-sc0000018-1510915933:12027..12311TCONS_00002101-exon-sc0000018-1510915933:12027..12311Clytia hemisphaericaexon
TCONS_00002101-exon-sc0000018-1510915933:10386..11783TCONS_00002101-exon-sc0000018-1510915933:10386..11783Clytia hemisphaericaexon
TCONS_00002101-exon-sc0000018-1491911889:17225..17267TCONS_00002101-exon-sc0000018-1491911889:17225..17267Clytia hemisphaericaexon
TCONS_00002101-exon-sc0000018-1491911889:12604..12724TCONS_00002101-exon-sc0000018-1491911889:12604..12724Clytia hemisphaericaexon
TCONS_00002101-exon-sc0000018-1491911889:12027..12311TCONS_00002101-exon-sc0000018-1491911889:12027..12311Clytia hemisphaericaexon
TCONS_00002101-exon-sc0000018-1491911889:10386..11783TCONS_00002101-exon-sc0000018-1491911889:10386..11783Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002101-proteinTCONS_00002101-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:10386..17267 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.60193e-05	0.175573	2.25364	0	0.585823	0.123029	4.40111e-05	0	0	0	0.0185607	1.29759	2.17552	2.00676	0	2.10468	0	0	0	3.84259e-06	3.62538	3.21907	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00002101 vs. Swiss-Prot (Human)
Match: TMED5 (Transmembrane emp24 domain-containing protein 5 OS=Homo sapiens GN=TMED5 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.746e-20
Identity = 56/199 (28.14%), Postives = 112/199 (56.28%), Query Frame = 3 
Query:   69 MEDGISVLVPAGRSDCYFRELKVGDRMDLEIQVLSGGHIDIHILVLSPTGRIILDEQSVTETSTEIKIDENGAYKVCLDNTFSLRSDKVVYFDLGIDEHNGTTVDHAELFQQMQLEKDEID-NTKDIAKSLDKIEMIFETIQEMQTRFRARYARHHYLQNANMTLVQWFSGASCFLMIMVGGLQVFLIRNLFKEQNAQR 662
            ++   +  +PAG+ +C+++ + +   +++E QVL G  +DI   + SP G+ ++ EQ  ++    ++  E G Y  C DNTFS  S+KV++F+L +D + G      E +++     D +D   +DI +S++ I+        +QT  RA  AR   +Q +N   V ++S  +  +M++V  +QV+++++LF+++   R
Sbjct:   32 LDSDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVET-EVGDYMFCFDNTFSTISEKVIFFELILD-NMGEQAQEQEDWKKYITGTDILDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVVSAIQVYMLKSLFEDKRKSR 228
The following BLAST results are available for this feature:
BLAST of TCONS_00002101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMED52.746e-2028.14Transmembrane emp24 domain-containing protein 5 OS... [more]
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