TCONS_00002112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002112
Unique NameTCONS_00002112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002112 ID=TCONS_00002112|Name=TCONS_00002112|organism=Clytia hemisphaerica|type=transcript|length=300bp
GTCGTGGTACTTGGCAAATGACATGCAATTCAGCGTCATTGCTCCATTCA
TTCTCATTGCTTTCTACAAATTGCAACAACGATTCAAGGACTCTCGTCTC
GTGCACACTGGAGCGTTCGCCATCACGTTTATTTGTTGCCTAGCAACCAT
TCTGATTCGGATGATTTTGCTGATTGTGCATAATTTTCCGGGACTTGTAA
TTACAATGACATTCGACGATCATCCGTTCAACAACGACGGACGTCAAGAT
AACTTATACGTCAAGCCTTACGTCCGTTTTTCGCCGTATATCATGGGGAT
Run BLAST on NCBI

transcript from alignment at sc0000018:158493..159861-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002112 ID=TCONS_00002112|Name=TCONS_00002112|organism=Clytia hemisphaerica|type=transcript|length=1369bp|location=Sequence derived from alignment at sc0000018:158493..159861- (Clytia hemisphaerica)
GTCGTGGTACTTGGCAAATGACATGCAATTCAGCGTCATTGCTCCATTCA
TTCTCATTGCTTTCTACAAGTAAGTCATACCCTAGACTAAAGTCTACTTC
TTTCTGATAATTCTTTTTTCTTCTTCATCATCTTTTCATCTTCATTTTCA
AAAGTTTTCAATTTTTCTATATAGTCATATTCCACTCTTTAATATCTCAA
CAAGCACAAAACCGCTATTTGATTCAAATTCTATCAAAAAGTTACAGCCC
TTTTTGTTTCCACTGCTGCAGATTTTATCGAGACAGACTTTATAATATTA
CGTCTCTTTTATTGATTGATAAACGACATTTAAGCTGTTGAACAATTGAA
ATAGTGTACATCTTCAGAAAGGCATCTAACTTTGCTTTCACGTATCTTAC
TTTGATTTCCACCTTCTCTGTAGATTGCAACAACGATTCAAGGACTCTCG
TCTCGTGCACACTGGAGCGTTCGCCATCACGTTTATTTGTTGCCTAGCAA
CCATTCTGATTCGGATGATTTTGCTGATTGTGCATAATTTTCCGGGACTT
GTAATTACAATGACATTCGACGATCATCCGTTCAAGTAAGTAAGGTTTTC
CATCCCGAATTTATGATATTCACGACGTAATGTTTTCTACGGGAAGACTC
CAGTTTTTGCCAGTAGTGGCAAATTTTATACAACTTTTGTCTTTGCCACT
ACTGACTAAAACCGGGGTATTTCTGTAGAAAACATTACGTCATGAATATT
ATGAATACGGTCTTGCAACTTTTCCATCTGTATATTCCTCAAGTTGAGAC
TTTTCACCCGTCCCAATATTGTTTGTATAATTTTGAGCTATTTGTTCTAC
GAGAGAAGATAGACTAAGTTTGCAGAATTGGTCGTTCTTTATTTCAAAAT
GATTTGAATCGATGAATTTAGAGTTGATATTCGTCTTGGACTACCAAGGC
TGATTCATTTCTTCTTTGTTGTCTTTCAAGCGGGAAAGTACACTTTGTCG
GGATACGCGCCTTGGCTATTATTTTGGAAATTGAAGTCTTTACTTCTCAC
TTTCTGATCGAAATTATTGCGGGCCTTATTTTGAAATAAAAAAATTGCTA
CAGCAATCAGCAACAGTTATAACATATTCTTTTGCTGCATTATATTGAGT
GGCCGGGTAGCTCAGTGGCTAGAGCATTCGCCTTGCAATCCAAATATTGT
GGGTTCAATCCCCAGGGATCTTAGATTTGGTAATCTGATCAATGCGGTAA
GTTAATGGGAGCTGAGAGACTGAGACTCCCTCCACCACTTTACCTTTCAG
CAACGACGGACGTCAAGATAACTTATACGTCAAGCCTTACGTCCGTTTTT
CGCCGTATATCATGGGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001104XLOC_001104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002112-exon-sc0000018-1575043694:159793..159861TCONS_00002112-exon-sc0000018-1575043694:159793..159861Clytia hemisphaericaexon
TCONS_00002112-exon-sc0000018-1575043694:159277..159438TCONS_00002112-exon-sc0000018-1575043694:159277..159438Clytia hemisphaericaexon
TCONS_00002112-exon-sc0000018-1575043694:158493..158561TCONS_00002112-exon-sc0000018-1575043694:158493..158561Clytia hemisphaericaexon
TCONS_00002112-exon-sc0000018-1510915933:159793..159861TCONS_00002112-exon-sc0000018-1510915933:159793..159861Clytia hemisphaericaexon
TCONS_00002112-exon-sc0000018-1510915933:159277..159438TCONS_00002112-exon-sc0000018-1510915933:159277..159438Clytia hemisphaericaexon
TCONS_00002112-exon-sc0000018-1510915933:158493..158561TCONS_00002112-exon-sc0000018-1510915933:158493..158561Clytia hemisphaericaexon
TCONS_00002112-exon-sc0000018-1491911889:159793..159861TCONS_00002112-exon-sc0000018-1491911889:159793..159861Clytia hemisphaericaexon
TCONS_00002112-exon-sc0000018-1491911889:159277..159438TCONS_00002112-exon-sc0000018-1491911889:159277..159438Clytia hemisphaericaexon
TCONS_00002112-exon-sc0000018-1491911889:158493..158561TCONS_00002112-exon-sc0000018-1491911889:158493..158561Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:158493..159861 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.389324	0.759304	0.321215	0	1.05005	0	0	1.87439	7.90801	1.6255	13.04	8.07145	0.258927	0	0.221071	0.474486	0	0.822953	0	0.866149	0.567659	0	0	0	1.35631	4.22759	0	0	5.62035	5.36375
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top