TCONS_00002115 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002115
Unique NameTCONS_00002115
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002115 ID=TCONS_00002115|Name=TCONS_00002115|organism=Clytia hemisphaerica|type=transcript|length=751bp
TTTGGTCTTCTAACCATGTATCAGGAACAGTGATGTTAGGAATCCACTAG
GGATGGTACTACCgcaatttatcaaatttttgtcatcaatttattttcca
ggtttttctaaatttttgaaaagatttgatcAGAAAAATGGCACGCTACT
TTCAACAATTAATATTGCTCATGGCAATCTCAATGCTGTCCATCCATTCA
ACTGAAATCAACCATCCTGCAATTGAAGAATCCATTAAAATCCTGAGAGA
ATCAAAATCATTACCCGAATTCACGGCAATCTTTCACCAAATTAAtctca
aaaacctttttttgaacACAACATCTGGAATTGATACACCAAAATATAAG
GCAAAGTACATCAAAACAGTCGCTAGAACTAAAAACCTTCACACATTTAT
CAATACGGAGAAATTAATGACAGATATGCAGACCGTTGCTAGTATTTTGG
ACGAAAACAcgtttttagaattggtactcAAGAATATTGACGCCTTGAAA
TCCTTGAACGCATTCGATTGGTTATCTGCAACTCAGCTAAATAATAAAGA
TGACATTGCATATCTTGCTGGTATACCTGACGGTGTTTCTGTTGAATGTG
GCACGAaatttgttgaatattttggtAAAATACTGACCGGCAACGACACA
TCTTTATTGTTTGGTCTGCAAAATATGCAAACTGCTTTGGAATCACCAGC
CGGACCAATGATTGATTCATGGGGCAAGGTGTCACCACGTATCTTAATAA
A
Run BLAST on NCBI

protein sequence of TCONS_00002115-protein

>TCONS_00002115-protein ID=TCONS_00002115-protein|Name=TCONS_00002115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MARYFQQLILLMAISMLSIHSTEINHPAIEESIKILRESKSLPEFTAIFH
QINLKNLFLNTTSGIDTPKYKAKYIKTVARTKNLHTFINTEKLMTDMQTV
ASILDENTFLELVLKNIDALKSLNAFDWLSATQLNNKDDIAYLAGIPDGV
SVECGTKFVEYFGKILTGNDTSLLFGLQNMQTALESPAGPMIDSWGKVSP
RILI
Run BLAST on NCBI

transcript from alignment at sc0000018:166151..167648-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002115 ID=TCONS_00002115|Name=TCONS_00002115|organism=Clytia hemisphaerica|type=transcript|length=1498bp|location=Sequence derived from alignment at sc0000018:166151..167648- (Clytia hemisphaerica)
TTTGGTCTTCTAACCATGTATCAGGAACAGTGATGTTAGGAATCCACTAG
GGATGGTACTACCGCAATTTATCAAATTTTTGTCATCAATTTATTTTCCA
GGTTTTTCTAAATTTTTGAAAAGATTTGATCAGAAAAATGGCACGCTACT
TTCAACAATTAATATTGCTCATGGCAATCTCAATGCTGTCCATCCATTCA
ACTGAAATCAACCATCCTGCAATTGAAGAATCCATTAAAATCCTGAGAGA
ATCAAAATCATTACCCGAATTCACGGCAATCTTTCACCAAATTAATCTCA
AAAACCTTTTTTTGAACACAACATCTGGAATTGATACACCAAAATATAAG
GCAAAGTACATCAAAACAGTCGCTAGAACTAAAAACCTTCACACATTTAT
CAATACGGAGAAATTAATGACAGATATGCAGACCGTTGCTAGTATTTTGG
ACGAAAACACGTTTTTAGAATTGGTACTCAAGAATATTGACGCCTTGAAA
TCCTTGAACGCATTCGATTGGTTATCTGCAACTCAGCTAAATAATAAAGG
TTGGTCATTTGTTTTTCCCTTCCTTTTGCTTTCGATGGTATAGCCACTTT
CTTTCAGGGATATTTCCCTGTCAGTTTAGCTACCATATTGCAGGTCAAAA
CTTGCACCACGAAGAAAGACCTCAAAAGGGTAACTGTCAACCTTTGACCT
TTGTTCATCGTAAAATATGTAGAGTCATTCAAAAGGCTATTTTTGCGTTT
TTTGATTGAAATTCGGTTGTCTTAGATAATATATTTTGTTTTATTCACCA
AAGACTTCTTCGTACTTAATACATGGTGTACTTGCTTCTTTTCTTGACAC
TAAGCAATTTAGGAGAAGGTTCAAGGATAAATGGAGCAATCCAGGGAGGA
AAAGTTGCACCCTCTCCTTCTTTTTGGTAGATATATAATAGCAATCGAAA
GAGGACCCTTCGGGTCGCTTCCGACGGTCGCAGATTTACTTACTACTTTA
CTTTTAGATGACATTGCATATCTTGCTGGTATACCTGACGGTGTTTCTGT
TGAATGTGGCACGAAATTTGTTGAATATTTTGGTAAAATACTGACCGGCA
ACGACACATCTTTATTGTTTGGTCTGCAAAATATGCAAACTGCTTTGGAA
TCACCAGCCGGACCAAGTAGGTATTATTTTTTCAAACTGTTAGTTTAATT
TTCTCTTATTTCAGAAGGAAGATTTTTTCAGTCGAGTCATAGTGATATGA
ATACTTTTATCCAGTATTTATATTTTACCATGAAGTTCTGTTTGCTACAG
TGTTACTTTTGCTGAGCGATGGTGGTTTCCAACTGCTGTTTATAAAATGG
ACACTAATGGACCCTCCTTTTATAATTTCTTTGATGCAATTTTATCCCAA
AATGAGATTAGAATCCTATATTTGTTGAAGATCTATAATTTTCTTTTCGA
TTTAGTGATTGATTCATGGGGCAAGGTGTCACCACGTATCTTAATAAA

Coding sequence (CDS) from alignment at sc0000018:166151..167648-

>TCONS_00002115 ID=TCONS_00002115|Name=TCONS_00002115|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at sc0000018:166151..167648- (Clytia hemisphaerica)
TGATTGATTCATGGGGCAAGGTGTCACCACGTATCTTAATAATGACATTG
CATATCTTGCTGGTATACCTGACGGTGTTTCTGTTGAATGTGGCACGAAA
TTTGTTGAATATTTTGGTAAAATACTGACCGGCAACGACACATCTTTATT
GTTTGGTCTGCAAAATATGCAAACTGCTTTGGAATCACCAGCCGGACCAA
ATGGCACGCTACTTTCAACAATTAATATTGCTCATGGCAATCTCAATGCT
GTCCATCCATTCAACTGAAATCAACCATCCTGCAATTGAAGAATCCATTA
AAATCCTGAGAGAATCAAAATCATTACCCGAATTCACGGCAATCTTTCAC
CAAATTAATCTCAAAAACCTTTTTTTGAACACAACATCTGGAATTGATAC
ACCAAAATATAAGGCAAAGTACATCAAAACAGTCGCTAGAACTAAAAACC
TTCACACATTTATCAATACGGAGAAATTAATGACAGATATGCAGACCGTT
GCTAGTATTTTGGACGAAAACACGTTTTTAGAATTGGTACTCAAGAATAT
TGACGCCTTGAAATCCTTGAACGCATTCGATTGGTTATCTGCAACTCAGC
TAAATAATAAAGTGATTGATTCATGGGGCAAGGTGTCACCACGTATCTTA
ATAATGACATTGCATATCTTGCTGGTATACCTGACGGTGTTTCTGTTGAA
TGTGGCACGAAATTTGTTGAATATTTTGGTAAAATACTGACCGGCAACGA
CACATCTTTATTGTTTGGTCTGCAAAATATGCAAACTGCTTTGGAATCAC
CAGCCGGACCAAATGGCACGCTACTTTCAACAATTAATATTGCTCATGGC
AATCTCAATGCTGTCCATCCATTCAACTGAAATCAACCATCCTGCAATTG
AAGAATCCATTAAAATCCTGAGAGAATCAAAATCATTACCCGAATTCACG
GCAATCTTTCACCAAATTAATCTCAAAAACCTTTTTTTGAACACAACATC
TGGAATTGATACACCAAAATATAAGGCAAAGTACATCAAAACAGTCGCTA
GAACTAAAAACCTTCACACATTTATCAATACGGAGAAATTAATGACAGAT
ATGCAGACCGTTGCTAGTATTTTGGACGAAAACACGTTTTTAGAATTGGT
ACTCAAGAATATTGACGCCTTGAAATCCTTGAACGCATTCGATTGGTTAT
CTGCAACTCAGCTAAATAATAAAGTGATTGATTCATGGGGCAAGGTGTCA
CCACGTATCTTAATAATGACATTGCATATCTTGCTGGTATACCTGACGGT
GTTTCTGTTGAATGTGGCACGAAATTTGTTGAATATTTTGGTAAAATACT
GACCGGCAACGACACATCTTTATTGTTTGGTCTGCAAAATATGCAAACTG
CTTTGGAATCACCAGCCGGACCAAATGGCACGCTACTTTCAACAATTAAT
ATTGCTCATGGCAATCTCAATGCTGTCCATCCATTCAACTGAAATCAACC
ATCCTGCAATTGAAGAATCCATTAAAATCCTGAGAGAATCAAAATCATTA
CCCGAATTCACGGCAATCTTTCACCAAATTAATCTCAAAAACCTTTTTTT
GAACACAACATCTGGAATTGATACACCAAAATATAAGGCAAAGTACATCA
AAACAGTCGCTAGAACTAAAAACCTTCACACATTTATCAATACGGAGAAA
TTAATGACAGATATGCAGACCGTTGCTAGTATTTTGGACGAAAACACGTT
TTTAGAATTGGTACTCAAGAATATTGACGCCTTGAAATCCTTGAACGCAT
TCGATTGGTTATCTGCAACTCAGCTAAATAATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001105XLOC_001105Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002115-proteinTCONS_00002115-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002115-exon-sc0000018-1575043694:167100..167648TCONS_00002115-exon-sc0000018-1575043694:167100..167648Clytia hemisphaericaexon
TCONS_00002115-exon-sc0000018-1575043694:166483..166641TCONS_00002115-exon-sc0000018-1575043694:166483..166641Clytia hemisphaericaexon
TCONS_00002115-exon-sc0000018-1575043694:166151..166193TCONS_00002115-exon-sc0000018-1575043694:166151..166193Clytia hemisphaericaexon
TCONS_00002115-exon-sc0000018-1510915933:167100..167648TCONS_00002115-exon-sc0000018-1510915933:167100..167648Clytia hemisphaericaexon
TCONS_00002115-exon-sc0000018-1510915933:166483..166641TCONS_00002115-exon-sc0000018-1510915933:166483..166641Clytia hemisphaericaexon
TCONS_00002115-exon-sc0000018-1510915933:166151..166193TCONS_00002115-exon-sc0000018-1510915933:166151..166193Clytia hemisphaericaexon
TCONS_00002115-exon-sc0000018-1491911889:167100..167648TCONS_00002115-exon-sc0000018-1491911889:167100..167648Clytia hemisphaericaexon
TCONS_00002115-exon-sc0000018-1491911889:166483..166641TCONS_00002115-exon-sc0000018-1491911889:166483..166641Clytia hemisphaericaexon
TCONS_00002115-exon-sc0000018-1491911889:166151..166193TCONS_00002115-exon-sc0000018-1491911889:166151..166193Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:166151..167648 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0654571	0.063831	0.0741139	0.217527	1.58233	0.906804	0.889199	1.06733	3.56966	1.07779	6.14424	2.94411	0.116337	0.13563	0	0.254708	0	0.151092	0	0	0	0	0	0	2.87778	6.19748	0.0897547	0	1.93722	2.71053
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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