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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002128 ID=TCONS_00002128|Name=TCONS_00002128|organism=Clytia hemisphaerica|type=transcript|length=2035bp
CCAGTTTAGATGACGAGTTTTGTGTTTTGAGGATTTtcctttatataaaa
atatgcccgcttttttttgggacatacTGTACATTCTTGTTCTCACTCGT
TATAGAGAGACGAAAGctttccaataaaatttaaGCTTCTGCGAATATTA
CTTTTTGAAGGATCTCCtgtttttatagtttttaaaattcagatACCATA
ATATCGAAAAATATTCATGCACATTTCTATTTACAATACaatagttctat
ttatactgagacgattaatttgtctgagacgagcaatttagaaaatgagc
attatggaggagtgtactttttattcatgtttcaataaataggatttcct
ccacagatcacattttacaaactactcgtctcagacgatttttccgtctc
agtataaatggaactaatgtttaaaaaaagtgtaaaattggTTGTTCTTG
TTTAATAAATTGGGAATAAATTACTGCGTGTCTTTAACTTAATAATATAG
CTCATAATTTCTACGACTACTAATTTTAATAATACCTTGAAATTAactca
tttatttttctacaGACTGTGCGAGCAtttcaaataacaataatggtgtC
ATTTTCAATGTAATAACAGATAGCTATTAACTGATAACAGATTTTCAAAG
TATGAAAAACTTCGTTTCGGAATAAACCATGTGTGATGCCGAGAGCGCCA
CCAGATACAAATCGGATGAAATTATCTCCCACTAGTGGACCCATGGCGTA
TAACGACTTCCGGCCGCGGCATTCATACGTCAAAAGGTCAGTGTCTAaac
agtttgtttttatattaaATTCTTCCTCTGGATCCTCGCGTAGTAAATGC
TCCTCTTTGATGAAGTCCAGATTCGGTTTTGATCCAACATGGATGATGAC
TCGGCTCACGTGAACTTTGAACGAGGCACCGCCCTTTTTACCACATGGCT
CAATAAGTACTTCCTTATTGGGTAAGATTTCGGCCAATCGGTGTTGAGGA
AGTGGCGTGTAAAATTCACATTTTGATTTGAGCTGTATCAGcgattttaa
tttcaaatagtCTGCGTAGGCAGACGATAATTGGTTTAGAACGAGATTAG
GGTCTTTAGGCGAACGTCTGAACACGTGTATGACTGGTATCTGTCGTGAG
ATGAGGTAAAGGACTGCGTCTGCTGCAACTAGCCCACATCCTACTACAAC
CACAGGGCATTTGTGTGTCTGGAGTCGATCGAAATCTGGGAAGTGGTGAT
GTACGAAGGTGAAGTCTTCACCAGGGATCTCGAGTTTGCGTGGATTATTG
AAAGCTCCGGTTGCCATAACAATGTTGTCCGCTTTCACGGTATACGTTTC
ACCTGTTTGTTGGTCTGTATATTGAACGCCTTCCACCGTCCATTGTGACG
TGTTGGATAAGCTCTGTGAGATGGATTTGACGTAAACGTTATCAACGAAA
AATGATGATAAGCCCATATATTTGACATAGTCGGAATAATAAAGCCCTAT
ATAATAAGGGTTTGTACGCTCTGGATGTACACCACCGACGCTGGGAACTT
TTGGTAGATTACCAAGACTCAATTGTTTCTGTTCATACCATTCATTGAAT
GTATATCCAGGTAATTCCAACCAGTTTGCCAAACTAACAGTCAATTGTGA
GTTAATCATATTATGCCATGAACCACCTGGTGGACCGAATCCAAGAACAA
CATGTCGGACTTCATTTTCGGGTAAATATTTCCATTCGATAACCGATTCG
NCGGTGGACCAAATCCAAGAACAACATGTCGGACTTCATTTTCGGGTAAA
TATTTCCATTCGATAACCGATTCGGGTTTGGTCAACATATCAGCATTTGG
ATGGTATAAATGGTCGAAGAGAATTGATACAGGATTCATGGTTCGTGAAT
CGAACAAACCTTCGCTCAGCCATTGTAAATCCTGCGGAAATGAAGAGAAT
CAAATTCTTTATTACATAGAAAAAGACAACTACAGATGAACATTCTTCAA
GTGatataaaaatcaaatatgAATTTAAAAAGTTC Run BLAST on NCBI transcript from alignment at sc0000018:321428..323875- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002128 ID=TCONS_00002128|Name=TCONS_00002128|organism=Clytia hemisphaerica|type=transcript|length=2448bp|location=Sequence derived from alignment at sc0000018:321428..323875- (Clytia hemisphaerica)
CCAGTTTAGATGACGAGTTTTGTGTTTTGAGGATTTTCCTTTATATAAAA
ATATGCCCGCTTTTTTTTGGGACATACTGTACATTCTTGTTCTCACTCGT
TATAGAGAGACGAAAGCTTTCCAATAAAATTTAAGCTTCTGCGAATATTA
CTTTTTGAAGGATCTCCTGTTTTTATAGTTTTTAAAATTCAGATACCATA
ATATCGAAAAATATTCATGCACATTTCTATTTACAATACAATAGTTCTAT
TTATACTGAGACGATTAATTTGTCTGAGACGAGCAATTTAGAAAATGAGC
ATTATGGAGGAGTGTACTTTTTATTCATGTTTCAATAAATAGGATTTCCT
CCACAGATCACATTTTACAAACTACTCGTCTCAGACGATTTTTCCGTCTC
AGTATAAATGGAACTAATGTTTAAAAAAAGTGTAAAATTGGTTGTTCTTG
TTTAATAAATTGGGAATAAATTACTGCGTGTCTTTAACTTAATAATATAG
CTCATAATTTCTACGACTACTAATTTTAATAATACCTTGAAATTAACTCA
TTTATTTTTCTACAGACTGTGCGAGCATTTCAAATAACAATAATGGTGTC
ATTTTCAATGTAATAACAGATAGCTATTAACTGATAACAGATTTTCAAAG
TATGAAAAAGTAAGTTTGTTCAATCCTTATTACCATACTGCATTAATATC
CCAACTTCGTGTTTCAAATCCCCATATGCCCTAACCTTTATATGTAAACC
CCACCTATCGCCTCCAATTTTAAGGAGACCCAAAATTTTCACTTTTAGAT
TTAAAGATTATATCCAAAAAGATATATTTATTTACATCTATCTATCTACA
TATATTGAAAGTTCTCTAACTACTTAGCTCATTTCCCCTACAGCTTAAGA
GAGCCTGTCTACAGAGCATCCTCGAAAGAAATGAGAACCTGTTTTTAAAG
TATCCTTTAATCACAAAGACCAGATATTTCAACACGTTTTTTACATCAAA
AAGGTGAACCTGTATTTCAACCATCCTTGGAAGAAAAATGACCAGCTGTT
TTTCACACATCTTCATTTTCAGCTTCGTTTCGGAATAAACCATGTGTGAT
GCCGAGAGCGCCACCAGATACAAATCGGATGAAATTATCTCCCACTAGTG
GACCCATGGCGTATAACGACTTCCGGCCGCGGCATTCATACGTCAAAAGG
TCAGTGTCTAAACAGTTTGTTTTTATATTAAATTCTTCCTCTGGATCCTC
GCGTAGTAAATGCTCCTCTTTGATGAAGTCCAGATTCGGTTTTGATCCAA
CATGGATGATGACTCGGCTCACGTGAACTTTGAACGAGGCACCGCCCTTT
TTACCACATGGCTCAATAAGTACTTCCTTATTGGGTAAGATTTCGGCCAA
TCGGTGTTGAGGAAGTGGCGTGTAAAATTCACATTTTGATTTGAGCTGTA
TCAGCGATTTTAATTTCAAATAGTCTGCGTAGGCAGACGATAATTGGTTT
AGAACGAGATTAGGGTCTTTAGGCGAACGTCTGAACACGTGTATGACTGG
TATCTGTCGTGAGATGAGGTAAAGGACTGCGTCTGCTGCAACTAGCCCAC
ATCCTACTACAACCACAGGGCATTTGTGTGTCTGGAGTCGATCGAAATCT
GGGAAGTGGTGATGTACGAAGGTGAAGTCTTCACCAGGGATCTCGAGTTT
GCGTGGATTATTGAAAGCTCCGGTTGCCATAACAATGTTGTCCGCTTTCA
CGGTATACGTTTCACCTGTTTGTTGGTCTGTATATTGAACGCCTTCCACC
GTCCATTGTGACGTGTTGGATAAGCTCTGTGAGATGGATTTGACGTAAAC
GTTATCAACGAAAAATGATGATAAGCCCATATATTTGACATAGTCGGAAT
AATAAAGCCCTATATAATAAGGGTTTGTACGCTCTGGATGTACACCACCG
ACGCTGGGAACTTTTGGTAGATTACCAAGACTCAATTGTTTCTGTTCATA
CCATTCATTGAATGTATATCCAGGTAATTCCAACCAGTTTGCCAAACTAA
CAGTCAATTGTGAGTTAATCATATTATGCCATGAACCACCTGGTGGACCG
AATCCAAGAACAACATGTCGGACTTCATTTTCGGGTAAATATTTCCATTC
GATAACCGATTCGNCGGTGGACCAAATCCAAGAACAACATGTCGGACTTC
ATTTTCGGGTAAATATTTCCATTCGATAACCGATTCGGGTTTGGTCAACA
TATCAGCATTTGGATGGTATAAATGGTCGAAGAGAATTGATACAGGATTC
ATGGTTCGTGAATCGAACAAACCTTCGCTCAGCCATTGTAAATCCTGCGG
AAATGAAGAGAATCAAATTCTTTATTACATAGAAAAAGACAACTACAGAT
GAACATTCTTCAAGTGATATAAAAATCAAATATGAATTTAAAAAGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002128-exon-sc0000018-1575043694:323217..323875 | TCONS_00002128-exon-sc0000018-1575043694:323217..323875 | Clytia hemisphaerica | exon |
| TCONS_00002128-exon-sc0000018-1575043694:321428..322803 | TCONS_00002128-exon-sc0000018-1575043694:321428..322803 | Clytia hemisphaerica | exon |
| TCONS_00002128-exon-sc0000018-1510915933:323217..323875 | TCONS_00002128-exon-sc0000018-1510915933:323217..323875 | Clytia hemisphaerica | exon |
| TCONS_00002128-exon-sc0000018-1510915933:321428..322803 | TCONS_00002128-exon-sc0000018-1510915933:321428..322803 | Clytia hemisphaerica | exon |
| TCONS_00002128-exon-sc0000018-1491911889:323217..323875 | TCONS_00002128-exon-sc0000018-1491911889:323217..323875 | Clytia hemisphaerica | exon |
| TCONS_00002128-exon-sc0000018-1491911889:321428..322803 | TCONS_00002128-exon-sc0000018-1491911889:321428..322803 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:321428..323875 - |
Blast
BLAST of TCONS_00002128 vs. Swiss-Prot (Human)
Match: OSGI2 (Oxidative stress-induced growth inhibitor 2 OS=Homo sapiens GN=OSGIN2 PE=2 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 3.544e-66 Identity = 141/396 (35.61%), Postives = 199/396 (50.25%), Query Frame = -2
Query: 673 SVIEWKYLPENEVRHVVLGFGPPGGSWHNMINSQLTVSLANWLELPGYTFNEWYEQKQLSLGNLPKVPSVGGVHPERTNPYYIGLYYSDYVKYMGLSSFFVDNVYVKSISQ----------------------SLSN--TSQWTVEGVQYTDQQTGETYTVKADNIVMATGAFNNPRKLEIPGEDFTFVHHHFPDFD------RLQTHKCPVVVVGCGLVAADAVLYLISRQIPVIHVFRRSPKDPNLVLNQL-SSAYADY------XXXXXXXXXXXKCEFYTPLPQHRLAEILPNKEVLIEPCGKKGGASFKVHVSRVIIHVGSKPNLDFIKXXXXXXXXXXXE-FNIKTNCLDTDLLTYECRGRKSLYAMGPLVGDNFIRFVSGGALGITHGL 1746
SV+ WK + + HVVLG GPPGG+WHNM S LT+S +W+ELPG F +W K+ SL +R P I YY YVK MGL F +N Y+ S+S+ SN W + G Q + + + A+N+ +ATG ++P LEI GEDF FV H P+F +L+ PV++VG GL AADAVL + IPVIHVFRR DP+L+ QL Y +Y + +S + YT P+HR+ + + +++ G +S ++ +GS PNL F+K++ + K N ++ D TYEC +L+A+GPLVGDNF+RF+ GGALG+T L
Sbjct: 105 SVLHWKLEQHHYIPHVVLGKGPPGGAWHNMEGSMLTISFGSWMELPGLKFKDWVSSKRRSLKG------------DRVMPEEIARYYKHYVKVMGLQKNFRENTYITSVSRLYRDQDDDDIQDRDISTKHLQIEKSNFIKRNWEIRGYQRIADGSHVPFCLFAENVALATGTLDSPAHLEIEGEDFPFVFHSMPEFGAAINKGKLRGKVDPVLIVGSGLTAADAVLCAYNSNIPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCTQSYSVDSNLLSDYTSFPEHRVLSFKSDMKCVLQSVS---GLKKIFKLSAAVVLIGSHPNLSFLKDQGCYLGHKSSQPITCKGNPVEIDTYTYECIKEANLFALGPLVGDNFVRFLKGGALGVTRCL 485
The following BLAST results are available for this feature:
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