TCONS_00002131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002131
Unique NameTCONS_00002131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1979

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002131 ID=TCONS_00002131|Name=TCONS_00002131|organism=Clytia hemisphaerica|type=transcript|length=1979bp
ATTAAGAAATTCAGATCAGAGGATTAAATCAGAATCATGCTACCTGCGAG
TGTGAAATAGGTACCTTGGTGACGGTGCCCCATTTTGCTTAAACagACTG
TGCGAGCAtttcaaataacaataatggtgtCATTTTCAATGTAATAACAG
ATAGCTATTAACTGATAACAGATTTTCAAAGTATGAAAAAGTAAGTTTGT
TCAATCCTTATTACCATACTGCATTAATATCCCAACTTCGTGTTTCAAAT
CCCCATATGCCCTAACCTTTATATGTAAACCCCACCTATCGCCTCCAATT
TTAAGGAGAcccaaaattttcacttttagaTTTAAAGATTATATCCAAAA
AGATATATTTATTTACATCTATCTATCTACATATATTGAAAGTTCTCTAA
CTACTTAGCTCATTTCCCCTACAGCTTAAGAGAGCCTGTCTACAGAGCAT
CCTCGAAAGAAATGAGAACCTGTTTTTAAAGTATCCTTTAATCACAAAGA
CCAGATATTTCAACAcgttttttacatcaaaaaggTGAACCTGTATTTCA
ACCATCCTTGGAAGAAAAATGACCAGCTGTTTTTCACACATCTTCATTTT
CAGCTTCGTTTCGGAATAAACCATGTGTGATGCCGAGAGCGCCACCAGAT
ACAAATCGGATGAAATTATCTCCCACTAGTGGACCCATGGCGTATAACGA
CTTCCGGCCGCGGCATTCATACGTCAAAAGGTCAGTGTCTAaacagtttg
tttttatattaaATTCTTCCTCTGGATCCTCGCGTAGTAAATGCTCCTCT
TTGATGAAGTCCAGATTCGGTTTTGATCCAACATGGATGATGACTCGGCT
CACGTGAACTTTGAACGAGGCACCGCCCTTTTTACCACATGGCTCAATAA
GTACTTCCTTATTGGGTAAGATTTCGGCCAATCGGTGTTGAGGAAGTGGC
GTGTAAAATTCACATTTTGATTTGAGCTGTATCAGcgattttaatttcaa
atagtCTGCGTAGGCAGACGATAATTGGTTTAGAACGAGATTAGGGTCTT
TAGGCGAACGTCTGAACACGTGTATGACTGGTATCTGTCGTGAGATGAGG
TAAAGGACTGCGTCTGCTGCAACTAGCCCACATCCTACTACAACCACAGG
GCATTTGTGTGTCTGGAGTCGATCGAAATCTGGGAAGTGGTGATGTACGA
AGGTGAAGTCTTCACCAGGGATCTCGAGTTTGCGTGGATTATTGAAAGCT
CCGGTTGCCATAACAATGTTGTCCGCTTTCACGGTATACGTTTCACCTGT
TTGTTGGTCTGTATATTGAACGCCTTCCACCGTCCATTGTGACGTGTTGG
ATAAGCTCTGTGAGATGGATTTGACGTAAACGTTATCAACGAAAAATGAT
GATAAGCCCATATATTTGACATAGTCGGAATAATAAAGCCCTATATAATA
AGGGTTTGTACGCTCTGGATGTACACCACCGACGCTGGGAACTTTTGGTA
GATTACCAAGACTCAATTGTTTCTGTTCATACCATTCATTGAATGTATAT
CCAGGTAATTCCAACCAGTTTGCCAAACTAACAGTCAATTGTGAGTTAAT
CATATTATGCCATGAACCACCTGGTGGACCGAATCCAAGAACAACATGTC
GGACTTCATTTTCGGGTAAATATTTCCATTCGATAACCGATTCGNCGGTG
GACCAAATCCAAGAACAACATGTCGGACTTCATTTTCGGGTAAATATTTC
CATTCGATAACCGATTCGGGTTTGGTCAACATATCAGCATTTGGATGGTA
TAAATGGTCGAAGAGAATTGATACAGGATTCATGGTTCGTGAATCGAACA
AACCTTCGCTCAGCCATTGTAAATCCTGCGGAAATGAAGAGAATCAAATT
CTTTATTACATAGAAAAAGACAACTACAGATGAACATTCTTCAAGTGata
taaaaatcaaatatgAATTTAAAAAGTTC
Run BLAST on NCBI

transcript from alignment at sc0000018:321428..325753-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002131 ID=TCONS_00002131|Name=TCONS_00002131|organism=Clytia hemisphaerica|type=transcript|length=4326bp|location=Sequence derived from alignment at sc0000018:321428..325753- (Clytia hemisphaerica)
ATTAAGAAATTCAGATCAGAGGATTAAATCAGAATCATGCTACCTGCGAG
TGTGAAATAGGTACCTTGGTGACGGTGCCCCATTTTGCTTAAACAGGTTA
AAATTTGAAATACCCTTTACTTTATACCCTCAATATGACAATAATACCCT
TTCGAAAAAGTCTCAAAATCATAATCTGATTGAACGTTTTTTTTTCTCTA
GTACTTCCTAGTACTTTGGATGAGGGTCAAGTATTCTTAACTTATTAACA
CTTGACTTTTTTACAAACATGAGAAATGATCAATTTGAGAGTTTTGGACT
TTTGAGTGAACATTTGGGTTAAAATTACATTTCTTCCTCAAAGCTTTCAA
TTTATCTCTAACAAAGAAAGCAGTTTTCTTCTGTTAACCAAATACGAAAT
AACTTATCAAATAACTTATTCTTATCAAATTCTGTGAAATTCACACTAGA
GGGTATTCTTAGGGTATTCTAAAGATTTGGCCAATTTTCACCCTGATATT
CTTATAGAAGATATTCTTATAAAAAAAGCGTGAACCAGCCACGTGTGGTC
GAGTCCCACTAAAGATGCTACAGATCCTAAAGGTTAGCCTATTACCTAAT
GGACGGGGTTGGTGGGATTAGCAGGGTAGGTAGAAAAATACAATAAGACT
AGGGAGGGGAGTTTTCCTTAGTGGAAAGCTTGTAAAAGGCGACTAACAAA
AAAAAACTACTTCAAAATTTCGCTGCTCAAATAAAAAAGTGAACCAAGGT
TTAGCATTTTGCTCTTTAAGTTCCGTTTTCTTTTTACTTTCTGTTATTTT
ACCAGGTTAAATTTTCTTGTAGTTGTTGTTTTTTAATTTTCTTTTGGGCT
GAAATGGAATGAAATATGAGATTGGATTAAAGAAAAAAAAACTAATTAGT
TGAATAGTGCTTAAAACCAGAACCTGTTACTCGAACTTTCCGAACCGACT
TTTCACTCAAACTTATTGAACCCCGGAGGGGCACTCGATTTCTAAACGGC
GGCATGTGCCGCCGAAAATTGCCTTTCAAAATCGGACCCTTATGCAGTTC
TTGAGCAGTGAAAAGGTACCCTTACAGTGCATTTTACCGAACGTTTCTGA
CCCTTACAGTGCAGCTTGATTTCATATCTTATTTTGCTGAAGCCATCTGA
AAATGAGTCTGAGATGTCGACACAATAATGTGAATTAAAACTGTAAAGAT
ACACCAGATTTTTACTGTCAGACTTGCAATTAAGTAGTTCTCGAACACAC
CCTTACAGTGTATCCAGCTAAAAGAACACCCTTGTAGTGCACTCTATCAA
AGTACACCCTTACAGTGCATTTCAAGGGTCTCGAAAAATCGAACCATATG
AGTGCCCCTGTTCGAGTAATAAGGTCTGAAAAATTTGATTTTGGAAGGTA
GAAACCAAATGTCAACTCATTAAGAAAATACAAGCTTTTTTTCGTCAACC
AATATATATTTTCTGTTTTTTAAAATTTTCAATTTTCGTCAAAAAAGTGA
TGTTACTACATAATACAATGTCGTCATTAAAAAAGAAAAGAAAAAGAAAA
AGAAACTGTTTATGAAAAATCCTCTTCAAAAAGTATGTTCGCTTTAAGCT
TGAGGTACCTTTGAACTTTATGTTTGTTCGTAATATAAGAGACATTATAT
TCCGACTAGGCTTAAGGGGTTCTTATCCAACGCTTGCGCCGAAATTGAGC
ATACAGTGTGTCCCAAAAAAGTAAACAAATTATTATATTAAAGTCATCAT
TATATATGCGAAGTTTTATGACTTAGTTTACTTGTTTACTTTCAATCTCC
AAAAATTAATTTAGTCATCTTGGGAATTGAATATCTAATGATTGAACAAA
GAATTCTAATCTTCAATTATTCCATTCCCCAGTTTAGATGACGAGTTTTG
TGTTTTGAGGATTTTCCTTTATATAAAAATATGCCCGCTTTTTTTTGGGA
CATACTGTACATTCTTGTTCTCACTCGTTATAGAGAGACGAAAGCTTTCC
AATAAAATTTAAGCTTCTGCGAATATTACTTTTTGAAGGATCTCCTGTTT
TTATAGTTTTTAAAATTCAGATACCATAATATCGAAAAATATTCATGCAC
ATTTCTATTTACAATACAATAGTTCTATTTATACTGAGACGATTAATTTG
TCTGAGACGAGCAATTTAGAAAATGAGCATTATGGAGGAGTGTACTTTTT
ATTCATGTTTCAATAAATAGGATTTCCTCCACAGATCACATTTTACAAAC
TACTCGTCTCAGACGATTTTTCCGTCTCAGTATAAATGGAACTAATGTTT
AAAAAAAGTGTAAAATTGGTTGTTCTTGTTTAATAAATTGGGAATAAATT
ACTGCGTGTCTTTAACTTAATAATATAGCTCATAATTTCTACGACTACTA
ATTTTAATAATACCTTGAAATTAACTCATTTATTTTTCTACAGACTGTGC
GAGCATTTCAAATAACAATAATGGTGTCATTTTCAATGTAATAACAGATA
GCTATTAACTGATAACAGATTTTCAAAGTATGAAAAAGTAAGTTTGTTCA
ATCCTTATTACCATACTGCATTAATATCCCAACTTCGTGTTTCAAATCCC
CATATGCCCTAACCTTTATATGTAAACCCCACCTATCGCCTCCAATTTTA
AGGAGACCCAAAATTTTCACTTTTAGATTTAAAGATTATATCCAAAAAGA
TATATTTATTTACATCTATCTATCTACATATATTGAAAGTTCTCTAACTA
CTTAGCTCATTTCCCCTACAGCTTAAGAGAGCCTGTCTACAGAGCATCCT
CGAAAGAAATGAGAACCTGTTTTTAAAGTATCCTTTAATCACAAAGACCA
GATATTTCAACACGTTTTTTACATCAAAAAGGTGAACCTGTATTTCAACC
ATCCTTGGAAGAAAAATGACCAGCTGTTTTTCACACATCTTCATTTTCAG
CTTCGTTTCGGAATAAACCATGTGTGATGCCGAGAGCGCCACCAGATACA
AATCGGATGAAATTATCTCCCACTAGTGGACCCATGGCGTATAACGACTT
CCGGCCGCGGCATTCATACGTCAAAAGGTCAGTGTCTAAACAGTTTGTTT
TTATATTAAATTCTTCCTCTGGATCCTCGCGTAGTAAATGCTCCTCTTTG
ATGAAGTCCAGATTCGGTTTTGATCCAACATGGATGATGACTCGGCTCAC
GTGAACTTTGAACGAGGCACCGCCCTTTTTACCACATGGCTCAATAAGTA
CTTCCTTATTGGGTAAGATTTCGGCCAATCGGTGTTGAGGAAGTGGCGTG
TAAAATTCACATTTTGATTTGAGCTGTATCAGCGATTTTAATTTCAAATA
GTCTGCGTAGGCAGACGATAATTGGTTTAGAACGAGATTAGGGTCTTTAG
GCGAACGTCTGAACACGTGTATGACTGGTATCTGTCGTGAGATGAGGTAA
AGGACTGCGTCTGCTGCAACTAGCCCACATCCTACTACAACCACAGGGCA
TTTGTGTGTCTGGAGTCGATCGAAATCTGGGAAGTGGTGATGTACGAAGG
TGAAGTCTTCACCAGGGATCTCGAGTTTGCGTGGATTATTGAAAGCTCCG
GTTGCCATAACAATGTTGTCCGCTTTCACGGTATACGTTTCACCTGTTTG
TTGGTCTGTATATTGAACGCCTTCCACCGTCCATTGTGACGTGTTGGATA
AGCTCTGTGAGATGGATTTGACGTAAACGTTATCAACGAAAAATGATGAT
AAGCCCATATATTTGACATAGTCGGAATAATAAAGCCCTATATAATAAGG
GTTTGTACGCTCTGGATGTACACCACCGACGCTGGGAACTTTTGGTAGAT
TACCAAGACTCAATTGTTTCTGTTCATACCATTCATTGAATGTATATCCA
GGTAATTCCAACCAGTTTGCCAAACTAACAGTCAATTGTGAGTTAATCAT
ATTATGCCATGAACCACCTGGTGGACCGAATCCAAGAACAACATGTCGGA
CTTCATTTTCGGGTAAATATTTCCATTCGATAACCGATTCGNCGGTGGAC
CAAATCCAAGAACAACATGTCGGACTTCATTTTCGGGTAAATATTTCCAT
TCGATAACCGATTCGGGTTTGGTCAACATATCAGCATTTGGATGGTATAA
ATGGTCGAAGAGAATTGATACAGGATTCATGGTTCGTGAATCGAACAAAC
CTTCGCTCAGCCATTGTAAATCCTGCGGAAATGAAGAGAATCAAATTCTT
TATTACATAGAAAAAGACAACTACAGATGAACATTCTTCAAGTGATATAA
AAATCAAATATGAATTTAAAAAGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001111XLOC_001111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002131-exon-sc0000018-1575043694:325658..325753TCONS_00002131-exon-sc0000018-1575043694:325658..325753Clytia hemisphaericaexon
TCONS_00002131-exon-sc0000018-1575043694:321428..323310TCONS_00002131-exon-sc0000018-1575043694:321428..323310Clytia hemisphaericaexon
TCONS_00002131-exon-sc0000018-1510915933:325658..325753TCONS_00002131-exon-sc0000018-1510915933:325658..325753Clytia hemisphaericaexon
TCONS_00002131-exon-sc0000018-1510915933:321428..323310TCONS_00002131-exon-sc0000018-1510915933:321428..323310Clytia hemisphaericaexon
TCONS_00002131-exon-sc0000018-1491911889:325658..325753TCONS_00002131-exon-sc0000018-1491911889:325658..325753Clytia hemisphaericaexon
TCONS_00002131-exon-sc0000018-1491911889:321428..323310TCONS_00002131-exon-sc0000018-1491911889:321428..323310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:321428..325753 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0418297	0	25.3766	15.9414	14.7411	19.1005	17.2406	44.2617	22.4577	28.6309	14.2144	7.37712	4.69529	7.26845	4.16455	3.65482	5.50981	20.4892	17.0997	13.006	5.23628	4.13093	15.2698	16.2403	14.338	8.48128	3.86562	1.82361
Blast
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BLAST of TCONS_00002131 vs. Swiss-Prot (Human)
Match: OSGI2 (Oxidative stress-induced growth inhibitor 2 OS=Homo sapiens GN=OSGIN2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.277e-66
Identity = 142/396 (35.86%), Postives = 199/396 (50.25%), Query Frame = -2 
Query:  617 SVIEWKYLPENEVRHVVLGFGPPGGSWHNMINSQLTVSLANWLELPGYTFNEWYEQKQLSLGNLPKVPSVGGVHPERTNPYYIGLYYSDYVKYMGLSSFFVDNVYVKSISQ----------------------SLSN--TSQWTVEGVQYTDQQTGETYTVKADNIVMATGAFNNPRKLEIPGEDFTFVHHHFPDFD------RLQTHKCPVVVVGCGLVAADAVLYLISRQIPVIHVFRRSPKDPNLVLNQL-SSAYADYXX------XXXXXXXXXKCEFYTPLPQHRLAEILPNKEVLIEPCGKKGGASFKVHVSRVIIHVGSKPNLDFIKXXXXXXXXXXXE-FNIKTNCLDTDLLTYECRGRKSLYAMGPLVGDNFIRFVSGGALGITHGL 1690
            SV+ WK    + + HVVLG GPPGG+WHNM  S LT+S  +W+ELPG  F +W   K+ SL              +R  P  I  YY  YVK MGL   F +N Y+ S+S+                        SN     W + G Q     +   + + A+N+ +ATG  ++P  LEI GEDF FV H  P+F       +L+    PV++VG GL AADAVL   +  IPVIHVFRR   DP+L+  QL    Y +Y K       +S     +    YT  P+HR+     + + +++      G      +S  ++ +GS PNL F+K++         +    K N ++ D  TYEC    +L+A+GPLVGDNF+RF+ GGALG+T  L
Sbjct:  105 SVLHWKLEQHHYIPHVVLGKGPPGGAWHNMEGSMLTISFGSWMELPGLKFKDWVSSKRRSLKG------------DRVMPEEIARYYKHYVKVMGLQKNFRENTYITSVSRLYRDQDDDDIQDRDISTKHLQIEKSNFIKRNWEIRGYQRIADGSHVPFCLFAENVALATGTLDSPAHLEIEGEDFPFVFHSMPEFGAAINKGKLRGKVDPVLIVGSGLTAADAVLCAYNSNIPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCTQSYSVDSNLLSDYTSFPEHRVLSFKSDMKCVLQSVS---GLKKIFKLSAAVVLIGSHPNLSFLKDQGCYLGHKSSQPITCKGNPVEIDTYTYECIKEANLFALGPLVGDNFVRFLKGGALGVTRCL 485
The following BLAST results are available for this feature:
BLAST of TCONS_00002131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OSGI22.277e-6635.86Oxidative stress-induced growth inhibitor 2 OS=Hom... [more]
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