TCONS_00002144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002144
Unique NameTCONS_00002144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002144 ID=TCONS_00002144|Name=TCONS_00002144|organism=Clytia hemisphaerica|type=transcript|length=574bp
AAACTCTTATAGAGATATTAATCAAAAGGATGAATTCAAACTCTGGCGAA
ACTGACTGGCAATTAATTTACTGGCCTGGTTTCTGTGGACGTGGAGAATT
TGTGCGTTTAGTTTTTGAAGAAGCTGGCATCAAGTATGTAGAGAATAATG
ATGCTGAatatatttataaatatttcaaatgtcaTGAGAATGAGATGGAT
GGATTTCCAATGCTGTCACCACCAATAATCAAAGACAGAAAAACTGGATT
TCAATTATGTCAAACACCAGTCATTTGTAAATACCTGGGCAAGAGGTATG
GGTTGTATCCTGACAACGAGGCTGATGAATTCCATGCTGATCAAGTCAAC
GCTACAATTCATGACTATATTGGTGAAGttggAAAATGACTGCGAGACAG
GGATTTGAAAATGGACACATAGAAAATTATTCCAAACTTTGCTAAATTTG
GAGGCGGAAAATACTCTATACTTTGCTGAGAGAGAAATCCTTCTGAGACA
TAATGGACACTGATAGCTTGTTCAAATCTTtctagtaagtaagtctgtga
TCGCAGTCGGATCGACCCGAAGAc
Run BLAST on NCBI

transcript from alignment at sc0000018:558362..560461-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002144 ID=TCONS_00002144|Name=TCONS_00002144|organism=Clytia hemisphaerica|type=transcript|length=2100bp|location=Sequence derived from alignment at sc0000018:558362..560461- (Clytia hemisphaerica)
AAACTCTTATAGAGATATTAATCAAAAGGATGAATTCAAACTCTGGCGAA
ACTGACTGGCAATTAATTTACTGGCCTGGTTTCTGTGGACGTGGAGAATT
TGTGCGTTTAGTTTTTGAAGAAGCTGGCATCAAGTATGTAGAGAATAATG
ATGCTGAATATATTTATAAATATTTCAAATGTCATGAGAATGAGATGGAT
GGATTTCCAATGCTGTCACCACCAATAATCAAAGACAGAAAAAGTAAGTT
TTCTCTTTTCCTACATTTGACTTTCTCTCTAATTCGATCCTCAAAGACTT
TTCTTCGATTAGAGAAAGATTATAAAGAGTATTTTCCACTACTTTTCAAC
TGAAAGGACCAGTCTTTTAGTTCGAATTATAGGAAAAATCGAATTATAAA
GGTTAGAGTTGAAGAGAGCTGACTCTAAATCTAAACTAGCCATAACTTTC
ATTAAAGTGACACCGTTCAAAAGGAATGATCTTAGCCCTACAGTAATTTT
TGTTAAGAGTGATCTCTCATCTGAGACAAATTCTTTCAAATGCTAACAAA
TGTGTCAAGGGTGATATACAGTCTACTTAGAGTGACATCCGTGCCTTGTC
TTACACATTTTTTTTTATAAGAACAATTTCATAACAATACGAGGCTGAAT
TTTGGCCAAAACCTAAGAACAAATTAAGAAGAATCTAAGCCTCAGATTTC
AGAAATTACTGACAAGTACAGGTTTCCATTTTCATTAATATTAACATTTA
AACCTGAAAATCCTTATGCGTGAAGCTATGAATGCCGTCCTCGGAAGCTT
TAGGCTTCCTGCGGTAGCAATAAGTTTGAGTTTATCGACCCAGTGAATAA
TCTTGGATTACGAAATTTACGTTTGGCTACGTTTTGAGAAATTCTCCTCT
CCTCATCGGGCAAAATATATTTTTATAAATCCTTAGAAAATTACATATGA
AAGGAGTTCTTAGGTTTTCCAAAAATACCCAGCTTAATAAAATTTGCGGA
CTCGGACCTTAAGCTATATAACCTCTAACAGCTATTCATGTTGCATTGTT
TTAATGGCTAGAATAAAATTATTTTGAATAGCTTCAATCTCATAATTTTG
ACAAGCTATTTTTAACTTAGTCTTAACCTCCCAAGCCTTTTCCAGGTGTA
ACGTAGACATTTCTTTCAGTTCAGTCTTGAAGAGAAATATCTGAAGAAAT
ACCCCCTGTAATCTCAGCCGAAGAAAGATAGTGTGCTGAACTATATAACA
TATCTCTGTAATTTCAAAAGATCTGAATCTTCATTTCAAAGGTTTTGTTT
TTTAAGAGTGATATCGTTTGCTTACTCATCACTTTTAATTCACAAGCTTT
TTCATATTGGATTGACACGGATATGGAGCAAGATTGGTCAGAAAAAGGAA
AAGAAAAATATCTTTTTGCTTTTATCAGCATGTCCTGATATGAATATGTG
TCTGATATGAAACGGGAACACTTATATAAAAAAAACCTTTAACCATTTCT
TTACAAGCTGGATTTCAATTATGTCAAACACCAGTCATTTGTAAATACCT
GGGCAAGAGGTATGGGTTGTATCCTGACAACGAGGCTGATGAATTCCATG
CTGATCAAGTCAACGCTACAATTCATGACTATATTGGTGAAGGTTCGTAA
AAGAATTGAAACAAAAAAATACATTTTCTCTTGTTTGTTGATTTTTGAAA
ATATTTTCAATTTCTCTCAATAACCAGATTTTTAGACTATACTTTCCATA
TTTTAGGGGTATTCAGAGGCACATCTCCCAACCTCCTTTCCATTGCGACA
AGAGACAGCCCCTTTCTCACTGACCTGGTAGGATTTTTCCAGGCAGTGGG
GATAAAAATAATGGTCTGAAACTTGATGGAGATTTCATTTCTTTTGTTTT
AAAGTTGGAAAATGACTGCGAGACAGGGATTTGAAAATGGACACATAGAA
AATTATTCCAAACTTTGCTAAATTTGGAGGCGGAAAATACTCTATACTTT
GCTGAGAGAGAAATCCTTCTGAGACATAATGGACACTGATAGCTTGTTCA
AATCTTTCTAGTAAGTAAGTCTGTGATCGCAGTCGGATCGACCCGAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001118XLOC_001118Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002144-exon-sc0000018-1575043694:560219..560461TCONS_00002144-exon-sc0000018-1575043694:560219..560461Clytia hemisphaericaexon
TCONS_00002144-exon-sc0000018-1575043694:558820..558954TCONS_00002144-exon-sc0000018-1575043694:558820..558954Clytia hemisphaericaexon
TCONS_00002144-exon-sc0000018-1575043694:558362..558557TCONS_00002144-exon-sc0000018-1575043694:558362..558557Clytia hemisphaericaexon
TCONS_00002144-exon-sc0000018-1510915933:560219..560461TCONS_00002144-exon-sc0000018-1510915933:560219..560461Clytia hemisphaericaexon
TCONS_00002144-exon-sc0000018-1510915933:558820..558954TCONS_00002144-exon-sc0000018-1510915933:558820..558954Clytia hemisphaericaexon
TCONS_00002144-exon-sc0000018-1510915933:558362..558557TCONS_00002144-exon-sc0000018-1510915933:558362..558557Clytia hemisphaericaexon
TCONS_00002144-exon-sc0000018-1491911889:560219..560461TCONS_00002144-exon-sc0000018-1491911889:560219..560461Clytia hemisphaericaexon
TCONS_00002144-exon-sc0000018-1491911889:558820..558954TCONS_00002144-exon-sc0000018-1491911889:558820..558954Clytia hemisphaericaexon
TCONS_00002144-exon-sc0000018-1491911889:558362..558557TCONS_00002144-exon-sc0000018-1491911889:558362..558557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:558362..560461 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.340714	0.511215	1.85206	0	0	0	0	0	11.0993	13.6417	18.7749	5.39069	9.46087	8.09843	2.87012	5.87609	1.10843	1.81823	2.36955	0.00124317	0.873111	0	2.27295	0.780974	0.874139	0.22548	0.338264	0.39153	3.39054	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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