TCONS_00002158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002158
Unique NameTCONS_00002158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002158 ID=TCONS_00002158|Name=TCONS_00002158|organism=Clytia hemisphaerica|type=transcript|length=406bp
CCCTTATTACTGTAAttgttgacaaaaatttttcctCATTTCAGGTGGTT
GGCAAATAATGGATGCTTCATCGCAATTATGCTGCAATAACAATCTCTAC
AATGCACTCCCCTACCATCGCTGTTGTGGGTCTACCACTTACAACACCAA
ATCTCAAAAATGTTACCGTGGCAAAGTTTACTCTCGTAAAGTCCGATGCG
GAAGAAATTACTACGATCCTAACACCGAATTCTGCGTCAATTACAAAGTG
TTCAACCGCAATGAGTATGGAGTTTGTAGAGGCTTTGTCTTGAGAAGAGC
AGCTCCTGAAGCCAAAGACTCTGCTAAATCATTAAATATGATGTTGCcaa
ttttttagaattcttGTAATTTTTATGCTATGAGAATATTTTCTGTTAAT
TTACCG
Run BLAST on NCBI

transcript from alignment at sc0000018:824309..826716-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002158 ID=TCONS_00002158|Name=TCONS_00002158|organism=Clytia hemisphaerica|type=transcript|length=2408bp|location=Sequence derived from alignment at sc0000018:824309..826716- (Clytia hemisphaerica)
CCCTTATTACTGTAATTGTTGACAAAAATTTTTCCTCATTTCAGGTGGTT
GGCAAATAATGGATGCTTCATCGCAATTATGCTGCAATAACAATCTCTAC
AATGCACTCCCCTACCATCGCTGTTGTGGGTGAGCTAAGCTATTGTTTCG
TTCAAACATTCGTCACTTGATTGAAAATAGGACCTCAAAATAGACTTTTG
GGATCAAAATATTAGTTTTTGTATTTCAAGTTAGAAACATTCCTTGGAAC
CTTTGTCAATTTTTTATAGGTCTACCACTTACAACACCAAATCTCAAAAA
TGTTACCGTGGCAAAGTTTACTCTCGTAAAGTCCGATGCGGAAGAAATTA
CTACGATCCTAACACCGAATTCTGCGTCAATTACAAAGTGTTCAACCGCA
ATGAGTATGGAGTTTGTCGAGGCTTTGTCTTGAGAAGAGCAGCTCCTGAA
GCCAAAGACTCTGCTAAATCATTAAATATGATGTTGCCAATTTTTTAGAA
TTCTTGTAATTTTTATGCTATGAGAATATTTTCTGTTAATTTACCGTTCA
AATAACACTTCAGCAATGTCTGTTTTCAATTGTCCTTATACACACTTTGA
TAGAACAATTTTTTAAGAATACAAGGCCAGGTTTTCGCTGAAACCTTAAA
CTACGTCGTTGTATTTCGCCGCAGATTAAACTTGCAATAGGATCTATTTT
TTTATATGTTCACTGAATACAATAGACTGGAGTCGTTTATAATGCGTGTA
TATACTAATAATACCAATACTAATAATAATACTACGGGATTTAGTTTGTA
TAAACGACTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAAACATCATATTTACTGTTCAGTATTGAATTGAAAA
TGTTGAAAGTCTCCCTTATTACTGTAATTGTTGACAAAAATTTTTCCTCA
TTTCAGGTGGTTGGCAAATAATGGATGCTTCATCGCAATTATGCTGCAAT
AACAATCTCTACAATGCACTCCCCTACCATCGCTGTTGTGGGTGAGCTAA
GCTATTGTTTCGTTCAAACATTCGTCACTTGATTGAAAATAGGACCTCAA
AATAGACTTTTGGGATCAAAATATTAGTTTTTGTATTTCAAGTTAGAAAC
ATTCCTTGGAACCTTTGTCAATTTTTTATAGGTCTACCACTTACAACAGC
AAATCTCAAAAATGTTACCGTGGCAAAGTTTACTCTCGTAAAGTCCGATG
CGGAAGAAATTACTACGATCCTAACACCGAATTCTGCGTCAATTACAAAG
TGTTCAACCGCAATGAGTATGGAGTTTGTAGAGGCTTTGTCTTGAGAAGA
GCAGCTCCTGAAGCCAAAGACTCTGCTAAATCATTAAATATGATGTTGCC
AATTTTTTAGAATTCTTGTAATTTTTATGCTATGAGAATATTTTCTGTTA
ATTTACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001125XLOC_001125Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002158-exon-sc0000018-1575043694:826588..826716TCONS_00002158-exon-sc0000018-1575043694:826588..826716Clytia hemisphaericaexon
TCONS_00002158-exon-sc0000018-1575043694:826416..826447TCONS_00002158-exon-sc0000018-1575043694:826416..826447Clytia hemisphaericaexon
TCONS_00002158-exon-sc0000018-1575043694:824309..824553TCONS_00002158-exon-sc0000018-1575043694:824309..824553Clytia hemisphaericaexon
TCONS_00002158-exon-sc0000018-1510915933:826588..826716TCONS_00002158-exon-sc0000018-1510915933:826588..826716Clytia hemisphaericaexon
TCONS_00002158-exon-sc0000018-1510915933:826416..826447TCONS_00002158-exon-sc0000018-1510915933:826416..826447Clytia hemisphaericaexon
TCONS_00002158-exon-sc0000018-1510915933:824309..824553TCONS_00002158-exon-sc0000018-1510915933:824309..824553Clytia hemisphaericaexon
TCONS_00002158-exon-sc0000018-1491911889:826588..826716TCONS_00002158-exon-sc0000018-1491911889:826588..826716Clytia hemisphaericaexon
TCONS_00002158-exon-sc0000018-1491911889:826416..826447TCONS_00002158-exon-sc0000018-1491911889:826416..826447Clytia hemisphaericaexon
TCONS_00002158-exon-sc0000018-1491911889:824309..824553TCONS_00002158-exon-sc0000018-1491911889:824309..824553Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:824309..826716 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.52537	2.85053	3.1945	5.84759	0	2.41451	0	0.449721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.702997	0.626433	0	0	0	0	0	0.705891
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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