TCONS_00002163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002163
Unique NameTCONS_00002163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2062

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002163 ID=TCONS_00002163|Name=TCONS_00002163|organism=Clytia hemisphaerica|type=transcript|length=2062bp
GAAATTTATTTAGATTAGACTTTCAGCTAAGTACAAGAAACGTCAAACAG
GGCTTGAAGCTTTGTTGGGGAATTCTTATCAAATAAACTGTTGTTCAGAA
AAGATTGATGTTTTCGAATATTGTTTTAGTTTAAGACATACAAAAATACC
ATGCCTTGGACGCCAATAACAACGCCGAACGAACTAGACCATGAGTTTTG
GAAGAGTCTCAACCTAAGTACAGATTCCATGGATAAATGGGTGCAAAATG
TGAATGTCCTCACTTTGGATGAAAAGGTGAAAGAAATGTTGAATTCTACT
GACCAGGATGTTGGTGACGATGGCCATGTTGAAGTTATGAAGATCGTGTT
TATGATCGATGCTTCAATTAACATTCTCCTCAATGTCTTACTCTTCACCT
TTCTCGTCAAATACATGGCACGTCTCAAATCGAAACACGTCGCAAAATGT
TTCATGAATCTTCAACTTTCCCATCTCTTATTCGGTGTTCTTCTCATCGT
CGGTCAGCTCGTTAACCATCGATATCTTCAATTAATCACTTTCGGGATCG
TCCTTCAAATGTTCTTTGCAATGATGTTGAAAACTTTGGATCAGTTCATC
ATTATCAAATACCCTTATCGGTATCAACGCATTCAAACAAGAGATTTGAT
GTTCATGATGTTGGCAACTTGGCTTCTAACCACTTTCATTATTCTCATTA
TCATGTTCGTCGCCGACATCTCCAACCGTCAATTGACCGTCATCTTAACG
TTCACAATCATCATCTCCGTTCTAACGTTATCCGCATGCAACTTTAGTGT
TTACGTTATTGCTCGCCGTCACTACGTTACCATACGTGGACAATACAAGA
AACGAAGTACGGGACGTATCCCAAAGAAACCCTTATTGACTTGTATAGCC
ATTGTGGCAACGTTCGGCTTACTCTGGCTACCATATTTGTTGCATAACGT
ATTGTTTCTAGGTAACGTGTATGTTGTTGGAAGGAGCAAGCTGTTCAGTG
AGTTAGTGCTTTTTGTAGCATCGTTAAATTCAATCATTGATCCGGTGATT
TTCATTTGGTTCAATAGAGATTTGAAATCTGAACTTTGGTCCTTTAAAGA
GAGGAATTCGACCAGGAGAGTTAAAAGACCTTCATTGGTCAATAATAATA
CAGATGGCTCTCTCCTTACAAAGACTGAAATTTCATCATGAGAATCATCT
CAAATGCTAATAAAAGCCAAATAACTTGCTTGGCCTTGATCATTATATTT
TTCAGGAGATGGCGCGGATTCACAGGTTTTAAAACTTGAGACCGCGAACC
TCCCACCCCTTACACTTGTGTTGtagattatttatttttttggataGTAT
CTGTAATTAAAATTTTGTGACAGGAGACAGGACTGACTTCACGAAAAGGT
TTTTCCcactttttggcaaaatttcatCGATCAATAGTCTAGTTCGTATT
AGATGAACTGAATCAAATGACGTCTTAAGTCTCGATTTGTTACTTGTGAT
TGATTAAAGTTTTAAGACATTTTGGCAAATCAAAACATCAAGATCAAGTC
CAAAGTCCGTTCTCAAGAAaacaaatattcaaaaataattattctgtAGC
GGAGTCacgtaaaattgaaatttttgaacaTTTCTGTTCAACTTTCGTGT
TTTGTTAATTAAACCTCAGGAATAAAATCACTTCTATGGAGTTCTTCCAA
AAGGACTACTGTAGACTTTAAACATGccatgtttgtttatttttcataca
aaaaatttcCCATAGTGATTTTCGAAGATCATGTGATCTGAGGTGACCTT
GATGGCAAAGATGTAAACAGAAGcaagatatgaaatgggaaaTATCTAAT
CTAAAGTTCTTCGCAAAATCTTTACCTAACCTAAAAGTCATACCTCTCGA
CCAATTCTTTCGATCTCCCTTCCCATGTCTTTCTGACAAAATTACAAGCC
CTTAAAGAAGGTTaaataaaagtgacttttttGGGTTCGAGGCTTTCAAA
tccaactttcttttttttaagattcAGAAAGGTTGGTAATTTActaccaa
aatttcatgtca
Run BLAST on NCBI

transcript from alignment at sc0000018:836223..839586-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002163 ID=TCONS_00002163|Name=TCONS_00002163|organism=Clytia hemisphaerica|type=transcript|length=3364bp|location=Sequence derived from alignment at sc0000018:836223..839586- (Clytia hemisphaerica)
GAAATTTATTTAGATTAGACTTTCAGCTAAGTACAAGAAACGTCAAACAG
GGCTTGAAGCTTTGTTGGGGAATTCTTATCAAATAAACTGTTGTTCAGAA
AAGATTGATGTTTTCGAATATTGTTTTAGTTTAAGACATACAAAAATACC
ATGCCTTGGACGCCAATAACAACGCCGAACGAACTAGACCATGAGTTTTG
GAAGAGTCTCAACCTAAGTACAGATTCCATGGATAAATGGGTGCAAAATG
TGAATGTCCTCACTTTGGATGAAAAGGTGAAAGAAATGTTGAATTCTACT
GACCAGGATGTTGGTGACGATGGCCATGTTGAAGTTATGAAGGTATGTTT
ACCTTTTGCCATCTTAATTTATTATATGACATGAGACATTTCCAAGGTAT
AGGCCTTTTCACGGCCCATTATTCCTTTCGACGGTGAAGGTCCTATTATG
ACAATTATGACACGCACTTTGAGCTGGGCCGTTTTTGTAAATGTAGATTG
AGCTTCTAATATGCTTGAAAGGGAATTTGCCCAGCGAAGCTGTACATTGA
TGTAGCTGCGGGTCTGGTGGGTGTACAGAGGGCGAAGCTCCCGAAAAAAT
CTTGAATATGTAGATAGTATTAGTTATTTTTTCTTGTAAACAACCAACAA
GTTCAATTTTGCTAAAAAATAATAGCTTTCCTATTTTGGATTGAGTTTCA
AAAACGTTATTTTGGCCGGACATAAAATAGTGTTTAGAAAAATCCCTGCA
CACGCACGCTGCAATGCAATTACATTTTCTGACGTCAGTTTCGACAAGTC
TGTTTTTATCTGTCAATTTCATTTCATTCACAACATTCATTTTTAACATT
TTATAAAAGGGAAACTTTCGACCATATAAAGCTTAATTTTTGCAGATAAG
CGACAACATATTTTTAAATTTACCTGCCTTCTAAAAGATCCAACACGAAT
TAATTTTCCCTAATTCTTTTCATAGATCGTGTTTATGATCGATGCTTCAA
TTAACATTCTCCTCAATGTCTTGCTTTTCACANTCATAGATCGTGTTTAT
GATCGATGCTTCAATTAACATTCTCCTCAATGTCTTACTCTTCACCTTTC
TCGTCAAATACATGGCACGTCTCAAATCGAAACACGTCGCAAAATGTTTC
ATGAATCTTCAACTTTCCCATCTCTTATTCGGTGTTCTTCTCATCGTCGG
TCAGCTCGTTAACCATCGATATCTTCAATTAATCACTTTCGGGATCGTCC
TTCAAATGTTCTTTGCAATGATGTTGAAAACTTTGGATCAGTTCATCATT
ATCAAATACCCTTATCGGTGAGTTTATTTCTAGTGACACACAGACTAATT
TATATTAAGACTTTTTATCTGTTGCATACCTTACTCAGGAGAATGGCTTG
AAATCAGTTGGGTAGCAGTAAAATGGAACGAACTTTTTTCTAGACCATTT
ATCGCGGTTAAATAGTCTATAGAAAGTCGTTAGGCTAATGCTTATATCAA
CCTTCTCATTGCTCAGTCAAAGTGTACACTCCTGTATCACAGACCCACTG
GGGCCCCAGTCCCACTGGAAAATTTGGCAAAAATTGCGCCGCCGGTGGGA
AAATACCCTTAAATTTCAGACCCACTGGGAAATTGACTTTGATTTCGTCC
TCATTCGAAATTCAATGTTTAAAACTTGCACTCCAAAACTATCCCCACTG
GGATTTTTAATATTGGAACCTTTTTTTTTTCTATCCCCATTGTGATTTCA
ATTGGACTTTTTTTCCACACTGGGCTTTGAGACAGGGGTGTAAATGTTGA
GTAAGTATCTTGTTTAGCTTGAGTTATATGGAACATGACATGCTATTAAA
AGAAGAATGAAACAAGATGATAGAAATGAATGGAATCTTGTAATTGGAAT
TGTATCTTTCCATTCCCTTCAGGTATCAACGCATTCAAACAAGAGATTTG
ATGTTCATGATGTTGGCAACTTGGCTTCTAACCACTTTCATTATTCTCAT
TATCATGTTCGTCGCCGACATCTCCAACCGTCAATTGACCGTCATCTTAA
CGTTCACAATCATCATCTCCGTTCTAACGTTATCCGCATGCAACTTTAGT
GTTTACGTTATTGCTCGCCGTCACTACGTTACCATACGTGGACAATACAA
GAAACGAAGTACGGGACGTATCCCAAAGAAACCCTTATTGACTTGTATAG
CCATTGTGGCAACGTTCGGCTTACTCTGGCTACCATATTTGTTGCATAAC
GTATTGTTTCTAGGTAACGTGTATGTTGTTGGAAGGAGCAAGCTGTTCAG
TGAGTTAGTGCTTTTTGTAGCATCGTTAAATTCAATCATTGATCCGGTGA
TTTTCATTTGGTTCAATAGAGATTTGAAATCTGAACTTTGGTCCTTTAAA
GAGAGGAATTCGACCAGGAGAGTTAAAAGACCTTCATTGGTCAATAATAA
TACAGATGGCTCTCTCCTTACAAAGACTGAAATTTCATCATGAGAATCAT
CTCAAATGCTAATAAAAGCCAAATAACTTGCTTGGCCTTGATCATTATAT
TTTTCAGGAGATGGCGCGGATTCACAGGTTTTAAAACTTGAGACCGCGAA
CCTCCCACCCCTTACACTTGTGTTGTAGATTATTTATTTTTTTGGATAGT
ATCTGTAATTAAAATTTTGTGACAGGAGACAGGACTGACTTCACGAAAAG
GTTTTTCCCACTTTTTGGCAAAATTTCATCGATCAATAGTCTAGTTCGTA
TTAGATGAACTGAATCAAATGACGTCTTAAGTCTCGATTTGTTACTTGTG
ATTGATTAAAGTTTTAAGACATTTTGGCAAATCAAAACATCAAGATCAAG
TCCAAAGTCCGTTCTCAAGAAAACAAATATTCAAAAATAATTATTCTGTA
GCGGAGTCACGTAAAATTGAAATTTTTGAACATTTCTGTTCAACTTTCGT
GTTTTGTTAATTAAACCTCAGGAATAAAATCACTTCTATGGAGTTCTTCC
AAAAGGACTACTGTAGACTTTAAACATGCCATGTTTGTTTATTTTTCATA
CAAAAAATTTCCCATAGTGATTTTCGAAGATCATGTGATCTGAGGTGACC
TTGATGGCAAAGATGTAAACAGAAGCAAGATATGAAATGGGAAATATCTA
ATCTAAAGTTCTTCGCAAAATCTTTACCTAACCTAAAAGTCATACCTCTC
GACCAATTCTTTCGATCTCCCTTCCCATGTCTTTCTGACAAAATTACAAG
CCCTTAAAGAAGGTTAAATAAAAGTGACTTTTTTGGGTTCGAGGCTTTCA
AATCCAACTTTCTTTTTTTTAAGATTCAGAAAGGTTGGTAATTTACTACC
AAAATTTCATGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001127XLOC_001127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002163-exon-sc0000018-1575043694:839245..839586TCONS_00002163-exon-sc0000018-1575043694:839245..839586Clytia hemisphaericaexon
TCONS_00002163-exon-sc0000018-1575043694:838270..838547TCONS_00002163-exon-sc0000018-1575043694:838270..838547Clytia hemisphaericaexon
TCONS_00002163-exon-sc0000018-1575043694:836223..837664TCONS_00002163-exon-sc0000018-1575043694:836223..837664Clytia hemisphaericaexon
TCONS_00002163-exon-sc0000018-1510915933:839245..839586TCONS_00002163-exon-sc0000018-1510915933:839245..839586Clytia hemisphaericaexon
TCONS_00002163-exon-sc0000018-1510915933:838270..838547TCONS_00002163-exon-sc0000018-1510915933:838270..838547Clytia hemisphaericaexon
TCONS_00002163-exon-sc0000018-1510915933:836223..837664TCONS_00002163-exon-sc0000018-1510915933:836223..837664Clytia hemisphaericaexon
TCONS_00002163-exon-sc0000018-1491911889:839245..839586TCONS_00002163-exon-sc0000018-1491911889:839245..839586Clytia hemisphaericaexon
TCONS_00002163-exon-sc0000018-1491911889:838270..838547TCONS_00002163-exon-sc0000018-1491911889:838270..838547Clytia hemisphaericaexon
TCONS_00002163-exon-sc0000018-1491911889:836223..837664TCONS_00002163-exon-sc0000018-1491911889:836223..837664Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:836223..839586 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.409359	0.532252	0.308998	0.424139	7.68129	6.58459	5.17953	5.98344	2.30283	3.5426	3.96874	3.11222	0.508443	0.611078	0.455335	0.415753	0.481493	0.419969	0	0	0.659652	1.15832	0.625817	1.4224	1.74909	1.69959	4.8647	1.99682	0.75726	0.771528
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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