TCONS_00002165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002165
Unique NameTCONS_00002165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002165 ID=TCONS_00002165|Name=TCONS_00002165|organism=Clytia hemisphaerica|type=transcript|length=571bp
TGTAAAGCAGCCAAAAAGGATTTTTAAAGATACAACAATCTAACTATACC
ATCGCCATCAATATGGGTTAGGTGAACATTACAACGCCCTCGTTCCGACA
AACGATACGCCATCCATCTGATCCAGTTGTTCAGAGGGAGTCCAGCTGAC
AAAAGTACGGTAAATTGTCGTTAATGACGTTCCTTTAAACTGACATCAAA
TGTTCAATGGGAATCCTTGAAAAGGGCCAAGTTTGTTGGCAGAactattt
attgatttttgaaccACCCACTGGTATTACCAGTAATCATCAATGAACTC
AAATGCTTCTTGGATGAGTGCTGTTCTTTGAAATACAGACATTACACCGT
AAACTTATGAGGTACAAATTATCAATACGTATTTGTGTATTTTGATTATG
CAAATTTGGATTCAACATTGTACATTATCGTAGGTAACTAAGCGCGAACA
GTATTGAGTTGAATCATTCTGGAAGAATATAAAGTTATCCCCGATGTAAA
AATGATCTCCTTTCATGCACTTAAGATTTGTCTTTTCATAGATCTAAAGC
GCATTCGCTTTTAAGNATGCA
Run BLAST on NCBI

transcript from alignment at sc0000018:842968..845399-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002165 ID=TCONS_00002165|Name=TCONS_00002165|organism=Clytia hemisphaerica|type=transcript|length=2432bp|location=Sequence derived from alignment at sc0000018:842968..845399- (Clytia hemisphaerica)
TGTAAAGCAGCCAAAAAGGATTTTTAAAGATACAACAATCTAACTGTAAG
ATCACAAACCGTTTATTTTTAAGGACTTTTAGGATATCATTAGTGTTGTT
TCCATAGAATCTCTTTACGGCTTTTAATTCTCAAACCTTACAATAAAACA
ATATTGCTAACCTGGTCGTCCTTCTTTTGGCATTTTACACAGCCGATAAG
AGTAACCTCCGCCATGATTCACATAGATCGCCCAAGCCACCTGCAATTAA
AAATGATTAAATTTTAGATTAATCATCGTTCGTTTGGATGAGAATGGAAT
TCGGTATCTTTTAGACAAAAAGCACGACTAAAAAAGTTAATTAATTTTTA
TTTGTGTAAAGAAAAACAAGCAGTCAACTTTGTGTGCTTTTACCTCAACC
TCTTGGCCTCGTTTCCATGTCGTAACAGAAATATTATGCACGAATTCAAC
ATCCTTTGCTCTCTGACCGTGACCGTAACCGCCGGTCTTCTGCCCACATT
TCAGTGCACCGCAACCATTCGGGTTACCACCGGATACACCACAAGGGCTG
TAAATCGGGGCGGCTCCTGGTGCCCGCCAGGGTGTGTACAACACTTTACT
TTCGTCTCTAACGCGACTGAAGGTACGAAGGGCGGGATCAAAAAGTGTGG
GCGTGTGTATCCATGTTTCATTTGTGAACCAGTTACAGATGGGACCAGGA
AACGCATAACCTTCACAATCATTGTTTTCTTTGCAGATGATCTTCCTTGG
GATCGTTAGGCCTGGTTTACACTGTAAACGTGTTTTCATACCAGCAAAAC
CTGTAAACCACGAGCCATTGTCTAATTGAATTCGTGTTTCAAAATCTAGC
CAGTTCGTTGGTTTGACCATAGCTCCATGACCGTGCACTGATTGTGCCCA
AAAAAGAAGAACTAAAATCGAGATCTGCCCAATACATGGATAGATTTTAA
GCTCCATTTTGTGTGAAATCTCCAATCTCCCAGTTTGGGTAATTCTTTAC
CCTTCTAACTATGTGCACGAATGCACTTAAAATGAATTCACTCTAAAAGA
CAAGTATAAATTCGGTTTACATGCAAGGACACAATTGTTTGTTATGATGC
AATGCACTCTTTTTGCTATTGCTATTCTGCTAGACATTATAAGTTTGTTT
GTTTAGTAAAAAGTAAATAAAGGTCTAACAGTGCTTTCCTTGCTTCCCTC
TCAAAGAGATATTCCACTCCTATTCCAATATTTAGTGTCAAAACTTCTTC
CCTGAGTGCATATCAATCCCCGCACTCCTTTCTCTAACGTCGTATATTCA
AGAAAAAGACCTTAAATATATTTGTCAAAAAATGAGGACCTTGAACCCTA
AACCTATAAGTGGGGGGCGTACGGTTTTTCGGAATTGCGGAAATCGGCCC
TTTTTTCTTCGGAATTTCGGAATTCATGCAAAATTCCTTCGGTATTTCGG
AATTCTGAAACTGTTTCGGTATCGGAAATCCATGAATTTTTGCTTTGAAA
TTTCGGTATTATTAAGTTTTTATCCCCTTTTTTTGGAATTCATACATGAA
AAATCAAATTTGATTAAAAATTAGTCAAAACGAGGNAAAAAGTAAATAAA
GGTCTAACAGTGCTTTCCTTGCTTCCCTCTCAAAGAGATATTCCACTCCT
ATTCCAATATTTAGTGTCAAAACTTCTTCCCTGAGTGCATATCAATCGCC
GCGCTCCTTTCTCTAACGTCGTATATTCAAGAAAAAGTCCTTGAATTTTG
TAAATATATTTGTCAAAAAATGAGGACCTTGAACCCTAAACCTATAAGAA
ATGGCTAACGATTTTATACTATTATCTTGGCTTAGCCAAGATATACTGGT
TTTCAATTAAAAATGTTCTCGTCAATGCATTATTTCCATGCAAATTATTT
TTGCAGATACCATCGCCATCAATATGGGTTAGGTGAACATTACAACGCCC
TCGTTCCGACAAACGATACGCCATCCATCTGATCCAGTTGTTCAGAGGGA
GTCCAGCTGACAAAAGTACGGTAAATTGTCGTTAATGACGTTCCTTTAAA
CTGACATCAAATGTTCAATGGGAATCCTTGAAAAGGGCCAAGTTTGTTGG
CAGAACTATTTATTGATTTTTGAACCACCCACTGGTATTACCAGTAATCA
TCAATGAACTCAAATGCTTCTTGGATGAGTGCTGTTCTTTGAAATACAGA
CATTACACCGTAAACTTATGAGGTACAAATTATCAATACGTATTTGTGTA
TTTTGATTATGCAAATTTGGATTCAACATTGTACATTATCGTAGGTAACT
AAGCGCGAACAGTATTGAGTTGAATCATTCTGGAAGAATATAAAGTTATC
CCCGATGTAAAAATGATCTCCTTTCATGCACTTAAGATTTGTCTTTTCAT
AGATCTAAAGCGCATTCGCTTTTAAGNATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001128XLOC_001128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002165-exon-sc0000018-1575043694:845355..845399TCONS_00002165-exon-sc0000018-1575043694:845355..845399Clytia hemisphaericaexon
TCONS_00002165-exon-sc0000018-1575043694:842968..843493TCONS_00002165-exon-sc0000018-1575043694:842968..843493Clytia hemisphaericaexon
TCONS_00002165-exon-sc0000018-1510915933:845355..845399TCONS_00002165-exon-sc0000018-1510915933:845355..845399Clytia hemisphaericaexon
TCONS_00002165-exon-sc0000018-1510915933:842968..843493TCONS_00002165-exon-sc0000018-1510915933:842968..843493Clytia hemisphaericaexon
TCONS_00002165-exon-sc0000018-1491911889:845355..845399TCONS_00002165-exon-sc0000018-1491911889:845355..845399Clytia hemisphaericaexon
TCONS_00002165-exon-sc0000018-1491911889:842968..843493TCONS_00002165-exon-sc0000018-1491911889:842968..843493Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:842968..845399 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.7077	24.3382	24.9893	21.1698	27.2336	13.4082	15.1157	16.4585	11.4719	10.3344	7.62827	7.06945	4.25261	6.55334	5.03636	5.90755	7.43247	9.04642	1.31559	3.44168	12.9629	14.0043	14.4132	12.3353	4.42917	12.721	9.05061	8.46168	10.9801	10.0299
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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