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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002172 ID=TCONS_00002172|Name=TCONS_00002172|organism=Clytia hemisphaerica|type=transcript|length=3947bpRun BLAST on NCBI protein sequence of TCONS_00002172-protein >TCONS_00002172-protein ID=TCONS_00002172-protein|Name=TCONS_00002172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1223bp MVKRNLSERSDGSTKLSKKDSIRSTGSSTKGPRRKESFKSSKKDGFRSPERun BLAST on NCBI transcript from alignment at sc0000018:863703..875528- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002172 ID=TCONS_00002172|Name=TCONS_00002172|organism=Clytia hemisphaerica|type=transcript|length=11826bp|location=Sequence derived from alignment at sc0000018:863703..875528- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000018:863703..875528- >TCONS_00002172 ID=TCONS_00002172|Name=TCONS_00002172|organism=Clytia hemisphaerica|type=CDS|length=44064bp|location=Sequence derived from alignment at sc0000018:863703..875528- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002172 vs. Swiss-Prot (Human)
Match: POTB2 (POTE ankyrin domain family member B2 OS=Homo sapiens GN=POTEB2 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 6.648e-23 Identity = 62/208 (29.81%), Postives = 106/208 (50.96%), Query Frame = 3
Query: 528 DRRNRNCLHYAAYLGYTEILETLLNRTDAHKIINAKDDSGKTPLFKAAETSSLACVEILLNHGSDVTIQDNDGISVMHVATLADNAMVMKTLWKHKADLNTKDKLGFTPLHLAAGLGLRGPTHFLLRHGAVVDPIDGKGRTPLLAAAADKNVEIIEILLQHGANATIQDDRGRTAKNIFSTLTLDRRFSDIQPTRTTSSHHFPFEMIT 1151
D++ R LH A+ G +E+++ LL+R +N D+ +T L KA + CV +LL HG+D IQD G + +H A ++ ++ K L + AD+ +K+K G TPL L + FL++ A ++ +D GRT L+ A + I+ +LL+ + + QD G+TA R ++ +S HH E+++
Sbjct: 133 DKQKRTALHLASANGNSEVVQLLLDRRCQ---LNVLDNKKRTALIKAVQCQEDECVLMLLEHGADGNIQDEYGNTALHYAIYNEDKLMAKALLLYGADIESKNKCGLTPLLLGVHEQKQEVVKFLIKKKANLNALDRYGRTALILAVCCGSASIVNLLLEQNVDVSSQDLSGQTA----------REYA------VSSHHHVICELLS 321 The following BLAST results are available for this feature:
BLAST of TCONS_00002172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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