TCONS_00002189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002189
Unique NameTCONS_00002189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002189 ID=TCONS_00002189|Name=TCONS_00002189|organism=Clytia hemisphaerica|type=transcript|length=418bp
AGAAATTCAAGGTGGGCAAAGGAAGTGGCGAGGGTTGAATTATTGTAGTG
TTTCATAGAACTTTATTTTACTTTTCAGATaaccaaaaatcaaattcatt
cgCAAGAAATAGTGGAAGTCTTCTTACCGTCCGTAGAAAAAGTGCTTAAG
CACAATACTGACTTTGGGAAGTTTCCCCATCTAAGGATATTCGTGCAGGA
CTTCTTATGCGCGCTCTACGATAACCGGAAAGAACGTGTCAAGGAATTCA
TTCAAAGTTTGCACACGGCCAACATGACTTGCCCACATCCTCGTGTTCTC
CCCAACATGGTGACCGTTTCCTTGGCAGCCATCTATTCCGTCTACGAAGA
AGAGCACAACGAACATGACAAGAAGAGGATCCAACAATGTTTCATTGTCG
TCTTTGAAACGATGTGAG
Run BLAST on NCBI

transcript from alignment at sc0000018:1044936..1045954-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002189 ID=TCONS_00002189|Name=TCONS_00002189|organism=Clytia hemisphaerica|type=transcript|length=1019bp|location=Sequence derived from alignment at sc0000018:1044936..1045954- (Clytia hemisphaerica)
AGAAATTCAAGGTGGGCAAAGGAAGTGGCGAGGGTTGAATTATTGTAGTG
TTTCATAGAACTTTATTTTACTTTTCAGATAACCAAAAATCAAATTCATT
CGCAAGAAATAGTGGAAGTCTTCTTACCGTCCGTAGAAAAAGTGCTTAAG
CACAATACTGACTTTGGGAAGTTTCCCCATCTAAGGATATTCGTGCAGGA
CTTCTTATGCGCGCTCTACGATAACCGGAAAGAACGTGTCAAGGAATTCA
TTCAAAGGTACTTTTCAAATTCAAAGATAGTTTCGGATACATAGTGAACG
TTGTCTAACAGCCATATTAGAATAGATATAAGAGGGCTATCAACATTACT
GTCAATAGTATCGCTTACAATCCTTATAATGTGGATTTTTCCCAGCCAAT
CTGTAAAAGCTCCCCTTCTTTTGCTTTTAGTTTGCACACGGCCAACATGA
CTTGCCCACATCCTCGTGTTCTCCCCAACATGGTGACCGTTTCCTTGGCA
GCCATCTATTCCGTCTACGAAGAAGAGCAGTAAGTCGTTCTTTCGCATGA
TGGAAATTAATTTTTGGATTAAATGCATGTGGTCATTTAGCCCGTGACAA
AAACATTCTATACTCCATTTTTGTAATATCAGATCACTGAGCTTTATATA
GACCCTTGAGGCAGTTTCTCAATCCTGGTCAAGCAAAATATTTTGATCTA
CTTTGCTTGCACGTTAGTGATGTAGCACCGTTTGACGTTTAAGTAATATT
TTAACATTATAATGACTTCTTTGCGAGACCTATTTTAAAAAAACTCTCGA
GCATGGCGGATTTAGTTCAGTGATTAGATGCAGTCATACATGCCTTGGAA
TGGGAACAAGTTAATCATTTTTGACGTAAGAACGCAATGTTTAATGTGTG
TGCAAATTATTGAGATGTATTATTCTCTAATAACGCATTGATTGTTCCTT
CTTTTAGCAACGAACATGACAAGAAGAGGATCCAACAATGTTTCATTGTC
GTCTTTGAAACGATGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001140XLOC_001140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002189-exon-sc0000018-1575043694:1045698..1045954TCONS_00002189-exon-sc0000018-1575043694:1045698..1045954Clytia hemisphaericaexon
TCONS_00002189-exon-sc0000018-1575043694:1045426..1045524TCONS_00002189-exon-sc0000018-1575043694:1045426..1045524Clytia hemisphaericaexon
TCONS_00002189-exon-sc0000018-1575043694:1044936..1044997TCONS_00002189-exon-sc0000018-1575043694:1044936..1044997Clytia hemisphaericaexon
TCONS_00002189-exon-sc0000018-1510915933:1045698..1045954TCONS_00002189-exon-sc0000018-1510915933:1045698..1045954Clytia hemisphaericaexon
TCONS_00002189-exon-sc0000018-1510915933:1045426..1045524TCONS_00002189-exon-sc0000018-1510915933:1045426..1045524Clytia hemisphaericaexon
TCONS_00002189-exon-sc0000018-1510915933:1044936..1044997TCONS_00002189-exon-sc0000018-1510915933:1044936..1044997Clytia hemisphaericaexon
TCONS_00002189-exon-sc0000018-1491911889:1045698..1045954TCONS_00002189-exon-sc0000018-1491911889:1045698..1045954Clytia hemisphaericaexon
TCONS_00002189-exon-sc0000018-1491911889:1045426..1045524TCONS_00002189-exon-sc0000018-1491911889:1045426..1045524Clytia hemisphaericaexon
TCONS_00002189-exon-sc0000018-1491911889:1044936..1044997TCONS_00002189-exon-sc0000018-1491911889:1044936..1044997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:1044936..1045954 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.7101	9.91596	5.86815	4.03895	43.4162	31.8914	38.0057	46.065	28.9682	31.457	37.5384	24.33	32.4513	25.6644	20.0296	17.719	40.6752	41.1348	47.6212	60.004	32.4638	37.1095	20.6002	26.1124	35.1794	40.9301	37.6422	28.5298	36.196	27.4848
Blast
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BLAST of TCONS_00002189 vs. Swiss-Prot (Human)
Match: CMIP (C-Maf-inducing protein OS=Homo sapiens GN=CMIP PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.825e-26
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:  100 SQEIVEVFLPSVEKVLKHNTDFGKFPHLRIFVQDFLCAL--YDNRKERVKEFIQSLHTANMTCPHPRVLPNMVTVSLAAIYSVYEEEHNEHD 369
            S  ++EVF P V+++LKHN DFGK P LR+F Q+++ AL   +   E VK+FIQS+H     CPHPRVLPN+V V LAAIYS YEE  N  D
Sbjct:  256 SMVVIEVFTPVVQRILKHNMDFGKCPRLRLFTQEYILALNELNAGMEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRD 347
The following BLAST results are available for this feature:
BLAST of TCONS_00002189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CMIP1.825e-2655.43C-Maf-inducing protein OS=Homo sapiens GN=CMIP PE=... [more]
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