TCONS_00002243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002243
Unique NameTCONS_00002243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002243 ID=TCONS_00002243|Name=TCONS_00002243|organism=Clytia hemisphaerica|type=transcript|length=593bp
AATCGAATTACAAATCTTTGTGATCATCAAATCCAAACGAAAACTTCGAA
ACCAGGGACTTTCTAAAATCAACTTGACCAGAAACTATATAAAGAGTGAG
AGTTATCGTGACCAAGCAGTAATCAACAAACGATTTTCAAGCATCACATC
ACTCCAAGAGCAATATTTTTTCGTTCAAAGAAGAAAAGATGcagaaaatt
ctttttgtaacgtttttatCAGTGCTTGTTATTCAATATGTAACATgtTA
CAAAGCGACGACATTGTCACCACAGAAACCCACGCCAACAATAGAAATTA
CGGCACCGAAACAAATATCTGACACTGACGAGATAGATACAGAAGACGAA
GATATGGAGCTTATCAAAGGTCGCGTCAAACGAGGATTTAGAATCCGACG
TCGGCGACGCAGTGACCCATGTCCAGGCAAGTGTGCAGGATTCCTTCAAT
GTATGAAATATACTGCAAACTTTTGGAGATGCATCGAGGTTTACCCTACT
GGCAATTGCAGATGTTGAATGAAGTTTATAATGTGAGATATAAAGCAAAA
AATGAAGTGTATTGTAGTTATGAACGtctatgaagaaaaaaac
Run BLAST on NCBI

transcript from alignment at sc0000019:328808..331115+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002243 ID=TCONS_00002243|Name=TCONS_00002243|organism=Clytia hemisphaerica|type=transcript|length=2308bp|location=Sequence derived from alignment at sc0000019:328808..331115+ (Clytia hemisphaerica)
AATCGAATTACAAATCTTTGTGATCATCAAATCCAAACGAAAACTTCGAA
AGTAGGAAGATTTTCTTAGCTATCAAATTAGGATAATAAGGAGATAAAAG
TTGTTTGTGGTTGTTTACACTTATTCTTTCAAACCAtcaataaagatttt
atttcattttgacgTCTTTATTTTAGCCAGGGACTTTCTAAAATCAACTT
GACCAGAAACTATATAAAGAGTGAGAGTTATCGTGACCAAGCAGTAATCA
ACAAACGATTTTCAAGCATCACATCACTCCAAGAGCAATATTTTTTCGTT
CAAAGAAGAAAAGATGcagaaaattctttttgtaacgtttttatCAGTGC
TTGTTATTCAATATGTAACATGTAAGTAACAATAGGATTTTTTTACATAT
CAATCCTAGTGATGGATATAGGGATTTGAGCATAGTCATTATATGAAACC
CCGGTCTGCCGATGTATTATATGTATAgtaattttgttcaattttctttt
gttacaaacaaaagacaagttgcgatttgcatactttttgatcacgttac
caaaatctcctcttgggattggtctatactttctaatcacatgactaaaa
agttgcaaaataaatcgattttggtaagCAGTAAGCTTTACCTTctaaca
ataaaatttttattgttagaAGATAAAGCTTACTGCTTACCAAAATCTct
taaaaagagacaaaagccttccagaagggtgtttttataatgactatgat
ttGAGCTTACCACAGTCTGCAAATGTTTTGATATAAGTCCCCAAAatcta
acctgagatcagattgtgaatgttttctgcacaccacgctgaagctctaa
agggatgtgtgaaaacaaaataatttcaagcgcctttagaggtttaccgt
gcgcgtaagaaaattatgaacatctgttatcaggttaccaaAATCTTGTT
GTAACCTAAatccaaatttttaatttcaaggtTACAAAGCGACGACATTG
TCACCACAGAAACCCACGCCAACAATAGAAATTACGGCACCGAAACAAAT
ATCTGACACTGACGAGATAGATACAGAAGGTGAGATTATATGACCCTAGA
AGCCCgaggggggcactcgattttgaaaacgaccttacgttcggccaaaa
atcaggtctttaaaatcggacccttacaatgcatttggctgaaaatcgac
ccttatagtgcaaaaaacctaccctttaAGGGCCGCACgcccggtaggtc
acttacctggagtgccccccccccgggcctagAAAACCAAAATGTTTTGT
ATCATAGGGTTATTAGCCTCCTCAGGAGGAACAAATCTATTTAAGGATTT
AAGTTTAGCTCGTTTGATATTCAGATGTTATATTGCTAACTATGAGAAAA
GTTCTAAATAGCTTTAGCGTCTGGGACAGAATTTTCAGCCTTTGGGCGTT
GACAACGGAAAGTTTGAGAGGGGGCTATCTAGGATAGATTAAACCTTCTT
TATCatatgttttaaatttgaaactaaacctttggaaattcaatagattt
tctaaaataaatgATGTGTCAAAAAATAAGCATCTCTATAGTCGAATCTC
AGTTCGCAAATTGCACAGATCCGTAACGCTGCGAAATTCTGCATCTTTTA
GCGTTGTGTTATTCCGCAACGTTGCGAAATTCCGCAGCTTTACTGCTGCA
TAATTTCGCAGCTCTGGCCTTTGGACCAAAATCGGCATCGTAGGGCCTGG
ACCGGGGTCCCAAAATAATGtgcattttgaagaacaacccaaaaggaaac
ttttcaccctagcattttaatttcctCACCGCGATTATTCACAATCATTC
TTGGAAGAAATACTACTTCGTTCAAAAAAGCGCTACTTTGTTCAAGAAAG
CAAGTTTTTGCCTGATTCTGCATGTGTGTAGAAGAAAAGACCCTGGGGAA
ACGCTGCGAAAAACCGCAACGTTGCGGAATATTGCAACGTTGCCGATCTA
TGCAATTTGCCGAACTGATTTTCATTCATCTGTAgttcaagtttttttgt
tgttttatagACGAAGATATGGAGCTTATCAAAGGTCGCGTCAAACGAGG
ATTTAGAATCCGACGTCGGCGACGCAGTGACCCATGTCCAGGCAAGTGTG
CAGGATTCCTTCAATGTATGAAATATACTGCAAACTTTTGGAGATGCATC
GAGGTTTACCCTACTGGCAATTGCAGATGTTGAATGAAGTTTATAATGTG
AGATATAAAGCAAAAAATGAAGTGTATTGTAGTTATGAACGtctatgaag
aaaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001187XLOC_001187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002243-exon-sc0000019-1491911889:328808..328858TCONS_00002243-exon-sc0000019-1491911889:328808..328858Clytia hemisphaericaexon
TCONS_00002243-exon-sc0000019-1510915933:328808..328858TCONS_00002243-exon-sc0000019-1510915933:328808..328858Clytia hemisphaericaexon
TCONS_00002243-exon-sc0000019-1575043694:328808..328858TCONS_00002243-exon-sc0000019-1575043694:328808..328858Clytia hemisphaericaexon
TCONS_00002243-exon-sc0000019-1491911889:328984..329178TCONS_00002243-exon-sc0000019-1491911889:328984..329178Clytia hemisphaericaexon
TCONS_00002243-exon-sc0000019-1510915933:328984..329178TCONS_00002243-exon-sc0000019-1510915933:328984..329178Clytia hemisphaericaexon
TCONS_00002243-exon-sc0000019-1575043694:328984..329178TCONS_00002243-exon-sc0000019-1575043694:328984..329178Clytia hemisphaericaexon
TCONS_00002243-exon-sc0000019-1491911889:329788..329886TCONS_00002243-exon-sc0000019-1491911889:329788..329886Clytia hemisphaericaexon
TCONS_00002243-exon-sc0000019-1510915933:329788..329886TCONS_00002243-exon-sc0000019-1510915933:329788..329886Clytia hemisphaericaexon
TCONS_00002243-exon-sc0000019-1575043694:329788..329886TCONS_00002243-exon-sc0000019-1575043694:329788..329886Clytia hemisphaericaexon
TCONS_00002243-exon-sc0000019-1491911889:330868..331115TCONS_00002243-exon-sc0000019-1491911889:330868..331115Clytia hemisphaericaexon
TCONS_00002243-exon-sc0000019-1510915933:330868..331115TCONS_00002243-exon-sc0000019-1510915933:330868..331115Clytia hemisphaericaexon
TCONS_00002243-exon-sc0000019-1575043694:330868..331115TCONS_00002243-exon-sc0000019-1575043694:330868..331115Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:328808..331115 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.28061	2.13508	4.86913	8.92936	11.7994	2.29284	0	0	15.7014	6.98025	17.1742	6.35941	9.67838	23.0792	23.541	16.8407	46.3212	57.0266	3.80909	10.1986	78.7616	73.2788	237.197	163.871
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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