TCONS_00002257 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002257
Unique Name	TCONS_00002257
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1704

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000019:580862..593240+
coding sequence from alignment at sc0000019:580862..593240+

transcript sequence

>TCONS_00002257 ID=TCONS_00002257|Name=TCONS_00002257|organism=Clytia hemisphaerica|type=transcript|length=1704bp
CGACAGAAAAGACGACAGACAGACGGCAGACGGCTCTTCACCGAACTCTA
AAATAAAGCTAAACTGTCTTCAGAAAAACACTCCAATATCATGTTTACAA
TCTAATAAAAAAGAGATCGGTGAAAAACAAATTCAATCGCGGTGCATTTG
ACTGACTATAACTCACTCGCGTGTAGCAAATTCTTTCCTTTCATGTATCC
TTCCTTCAGACAAgtgacaaaaatacaaaaagcaCTGCTAGCAACACAGC
CACAACAGCAGCAAGTTAAAGATAGAAGAGTAATTTCAATACCACATCAT
GGCATTTCGATTGATATCACATCACAGGACTATGTTCAGCCCAATGATTA
CTGCTGCTCGTAGAATGCTGACAATTGACATCACTTCACCGCaagaattt
gatgaaaaagtcTTGAAATCTGAAGTCCCTGTTATCATAGATTTTCACGC
CACATGGTGTGGTCCTTGCAAGCAGATGGATCCCACTCTGAAAAGTGTCA
TTCAGAATTACGAAGGGAAAATCAACTTGGTCAAAGTTGATGTTGATGAA
TTACAAGATTTAGCAATGGAATATGATGTGATGTCTATTCCTTACCTGGT
TGGCCTGAATAAAGGAAAAATCGTACAAACGGCTGTCGGTGCAAAACCAC
AAGATCAGATCATCCAATTTGTTGATGATGTATTGGCTGCTAGTCAATCT
TAATGAGAACTAAAGTGATACctaaaagtttgaattttctaACTGGTCCT
TTAGCTCTTTATTTAGTATGGTGTGGAGTGGAGTGGAGTGGAGTAATAAT
TACGCACGACTTGAAGATTAAAAGAATTTTCACTTGATGAATAAAATGTG
AATGGAGGTGACACGCGATCGTCGTGAAAACTAAATTAGGACGATAATGG
AATGAAGAAAATTGTTCGTAATTTCATCTTTGACAGACTGTTTTTTAATa
tctacatttttatgacaatAGTTCAGTCATTTAAGAGCTACTGATAGTAT
TTTGTATAGTAAGGAAAGCTTTGAACTTATCCCTTACGGGAAAATCCTAG
GAATAAAAATGGCTCAGAgttatataaaaaagacttgACATGACTAatta
acttttcataaaaagcGTTTCCTCCGATTTTTGACTACCTGGACCTGACc
caattattttcaaacttatttTACTGATTGATTTACAGTACTTCCTTATG
TTTTGTTGTGTGTTGTAAACATTAACTCGGGCTCCAGAAAGACACTGGAA
AACTTGGAAATGAATGCTTTCAGGGAAATCTCATAGAAAACTAGGGAGAC
TCTGAGaatttcagttaaaaaaaacagaatagcTTCTATTTTAAGTTCCG
GGGACATCATTTCTTGAATTTTCTCTTTTCATAGCAAACCATTGTGGCTC
CTTGAAGTCCcaaatcattttgatttttctatgaTGTCTAATCATACTGT
TTCAAGAATTTTTCCCATGGTTCATCATCGATCAAGGGTTTCAGTTAGGG
AAAAATTGCATGATTTCAGTCATTTTTTCTGGGAAATTaagctttttttt
tcaaagataagGAAAAGtctttactcttaggtgccaaataaacggggggg
ttggaaaattttcgaaattttaataaacgggggggggacctaattgccgg
ggggttggaaattgtacttctgaaaaccccaaaataaggtaaatataggc
taaa

Run BLAST on NCBI

protein sequence of TCONS_00002257-protein

>TCONS_00002257-protein ID=TCONS_00002257-protein|Name=TCONS_00002257-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MAFRLISHHRTMFSPMITAARRMLTIDITSPQEFDEKVLKSEVPVIIDFH
ATWCGPCKQMDPTLKSVIQNYEGKINLVKVDVDELQDLAMEYDVMSIPYL
VGLNKGKIVQTAVGAKPQDQIIQFVDDVLAASQS

Run BLAST on NCBI

transcript from alignment at sc0000019:580862..593240+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002257 ID=TCONS_00002257|Name=TCONS_00002257|organism=Clytia hemisphaerica|type=transcript|length=12379bp|location=Sequence derived from alignment at sc0000019:580862..593240+ (Clytia hemisphaerica)
CGACAGAAAAGACGACAGACAGACGGCAGACGGCTCTTCACCGAACTCTA
AAATAAAGCTAAACTGTCTTCAGAAAAACACTCCAATATCATGTTTACAA
TCTAATAAAAAAGAGATCGGTGAAAAACAAATTCAATCGCGGTGCATTTG
ACTGACTATAACTCACTCGCGTGTAGCAAATTCTTTCCTTTCATGTATCC
TTCCTTCAGACAAgtgacaaaaatacaaaaagcaCTGCTAGCAACACAGC
CACAACAGCAGCAAGTTAAAGATAGAAGGTAAAGGTAGGTTTAAGAAACA
CCTTTTACAAACCAAATACCAATGGTAATGGTTAATGCAGGAGTTTTTGT
TAGCACTTTAAGGTGTATGCCCGTTATAgccaaaatattgcattttgaaT
ATCCAGgtggtgtcaatcgaactgttcgattatcaAACTGTTCGATTAGC
GAACTAGTAATCCAACCCTATCAAACGGTAGCTGTTCAATTACTGAACCC
AATCACACACCTATCTAACCGGGATaactttcgtaaagttcgatgactgt
tcgattatacGATTTATAGTTCGATCGCAGTTCGATGAATACaactgaag
tttgattggttcaattgaATCGATTTATACCTTACggccaattttttatt
tatattccgaGGGCAAATTGGCGACCGTCCACGGGCCATagatctttttt
caaagaggccacgcACCCTTTTTGAATAATtgtgtagtccagcagaaaaa
caatgataaaaccatgcatagttattattaacaggaaataaaaagaaact
ttttaaatatatcaAATCTAAACAAAATGATATTGCTGGAGTTGCGCCAC
TCATTGACAAAGAAATGGACAAACCCACTcagacagtatagacctaactt
ttcatacaaaaattacgggaaacgcatgtttggactttgtaccctatgct
gcactcaagcacttgggccaaaatcccgcaaaggcaggacaaaaatcagt
tttttgaagtttgcaaaaaAacgccacatagaagatctttcaaattcagt
atgtaaatagagcagtaaaaaatacaacttttgtatttttcctttttttt
gcaaaagttctagtaatgaaaataaagggataatgataattgaatactat
ccattgatgatccgcgacACTATCGtcaagctagaatcgcttcgcgtact
cttcgcttgagaaaatgattgacagattgaagttttcatccccgcggtgc
gcgccgcgcgggagctcgggcgctcGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcaatgatg
acagtgcggttattaattttgttagatctgacaaattgatgtttgtaagt
gcactttatagttttgattcccattgaagaatcaaattctggttttcatg
ttattagatggtgttttagagctttaggtctacactctGTCAGATGATGG
TGAAATCGCCCAACTTCTCAATCAACATTATTGCAGTGTTTTCTCCAAGG
ACAATGTTATAACTCCAACAATCAACGATCCCAAAGGTTCAGACATTGCC
AATATTAAAggggaactaaacattttttgagttCATGCTTTTTTTGTCTC
CAAGAACTACACAACACAGTATAActtcgaaaaaatataatttccactCT
CAATGTCTTTCCTATTTTGTATAAAgagtcaggaacagtcgccttattag
gagacgcctcctgattaggagacccgtctcctaatcaggaggtcaggagg
ttcacgtctcctaatcaggagacgggtgtaattatctcgtgaacgagcaa
actgtgcatgatttgattgctcccaatggaaagagcacaaaaaattgatt
ccatatggtgattttcagaaaaatccaccggtggaatcaatcactattct
aataatccataagaaccaatcagaagtaagaatctgtcttctgaacaaaa
gcgtctcaaaaagaaaaatggcggacatgaaaaaaatcaagaggggcttc
cttgtagtgctttaaattaggattgtgatcgattgcaccgagaaattttg
ataatttttttaaaactttactaATTCGAAgctgctctttccattaaaac
tagtttcaaaatgcgcggaaaagcctaaagcccttaaaattgagatcaaa
gttttatgtctcctaattaggagacgggtctcttAATCAAGTgaccccaa
gcgacctacatgtctcctaatcaggagacgtctcctaatcaggagacgtc
tcctaatcaggagacgtctcctaatcaggagacgtctcctaatcaggagg
cgtctcctaatcaggaggcgtctcctaataaggcgactgttcctgactga
taaaaccttctttaaaaaacggATAATTTGTTTAAATGAACCCCCACTTT
ACAcatgtttgtgacgtcatatcgTTCATATTTTCTATGAATTTTGTGTA
TGTTCATCAACTTTAAAGCTTCATATTTCGTGAACAAGAAATAATAGGAA
GatagtaaaatcatttttgatttcaggcATCAGGAAGGATTCAGTTTTAC
GTAGACTAAATTTGGGGTTTTCAGCttattccaataaaaagttcaatttt
ttcaatcgactctaaaatcattttcactCACTTGTTTTCGAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGTCCCCACAATCAAAAGTTGAATCAGGAGTACCACAGGGATCTG
TATTGGGCCCATTACTCTTTCTCATATATATTAACGATATGCCACTCACA
ATCGAATCCACACTTGCTGACGACTCACTCCTACATCGTATCATTCGTAG
CCTATACGACACCACTATTTTCCAAAACGACCTTGACAAGTTACAAAAAT
GGGAAGAGGATTGGTCCATGGAATTCCATCCCAAGAAGTATAAAGTTTTG
CGAATAACAAATAAAGTAAAACCTACTGTCTGTGATTACTTCATTCACAA
TGAGAAACTAGAAACAGTCAGCAAAGCCAAATACTTAAGGGTAACCATAA
AAAAAAGCTAAATTGGAAAGACCACGTTAACACGATTGTCTCTAAAGCTA
CCAATGTGAGACTTTTCCTGCAACGCAACCTTCAATCATGTCTTAAAGAG
ACCAAATTCAAATGCTACAAAATATTCATCCGCCCAATTCTCGAATATGC
TAGCCCTGTCTGGTGCCCTCATAACAACACAACATTATCTAGCAAGATCG
AAATGGTCCAGCGCAAAGCTGGGCATACCATTACAGCCCAACAGCAATGG
CTAAACGATTGAATCTCGATTCTCTTGAAATGCAAAGAGActtatcttgt
ttgaaaatgttatttcatTGCGTAAATGGCTTTAAATACACGGAGAAGTC
TTTACTACCAACAAGATAAAGGACTTCTAATGTAAGATATAACTTGATCC
ATGCAAAActtaaagtttatgaaaagtcattttttcCTTTCACTATCAAA
CTATGGAATAGCTTGGACAATGGAATTGtaaatttaaaagaaagggATGA
ATTTAGAAACTCTTTGACTATTAAATAAGTATTATAATCATATACACTTT
TCAATTACTTTTAAGACAAAACACTTAAGCTTCTGTCCAATTTCCTAATT
TCCAGTCATTTCTATAATCTACCTCGCgacaaacttttgcaaatttttgc
cttcgTTAAATTCCTAACTACTGTTAGTTTTTCTTGAAAGACTATTTTTA
ACTTACTATTTAAACTTACTCatcaattatttattatttactattttaat
attttaaccattatatgtacattttaaataaacttaatttaatacactta
aatttttttattttccttaaaaaatttttgttaaatatttgcgaaagtaa
ttctaatgaatttatgcaaataaatatatagaaatagaaatagaaattac
aatatgcatgatacagtaattatgcatggttctatcattgtttttatgac
tgaactattcaacaggacgtcctctttgaaaaaaggtctattctcgcGGG
CCATTCTATTAATATCTACCCCAtcggatgggacaagctggagcttttac
aatttttattactttctttaaagaaagtgtcatctctattactattattt
caaatgagcaataatgagtgaagcatacagtgcctgtgttttgattaaac
aacctcgtaattttctgaaaggtaaagaaaagtagtTAGAATCAATCCGA
CACAATCATCGAACCACATTTAACTTTCATCGAACCACATCGAACTTTCA
TCGAACTTTCATCGAACCACATCGAACTTTCATCGAACTCGTCGAACAtc
atttttatacttttctttaacttttcacATTATCAGCAGGCGTCAAAATA
ATCCTTAAGCTTGGGTAGTCTGCTTCTGCGCCccattttggaatattttg
gtGCGCGCAGCACTTTCGATTTGACTTGGAAGAGGTTGGACGCATTTTGA
CCAAAACAGTGAGTTCTTCACAATCCGTTTTTCTTATATCTTTTGAAGTA
CTTTATCATTTCTCAAAGGtaaccccaaattttttttcttatgcttAGGG
CTATCAGATGAGCCTACTTTTGTTTCTTCTgattaagtttgaaaatttgg
tTGACTCCCCTACTTAAAAGCTAAAATCTGTTTTTTGGAGATTACAAAAA
AAcaccacatagaagatctttcaaattcagtatgtgaatagagcaataaa
aaatacaacttttctatttttccttttttttgcaaaatttctaggaatga
aaatagaGGGATAATACTATTGTCTATTGATGATCCGCCGACTATCGTAA
TAGTGCTCTTCCCTTGAGACAATGATTGACAAATTTTTCACCCGCGTGGG
AGCTTGCAGTGATTCTGCAAGCGTTCTGTAAGCATTCTCGGCTCAATTCC
TGTGCCaggctaaaatggtagacttagctgtgacagatcatttcaCGACC
CTTGAACACGCCCGGATGCCGCCCGAAATATTCCGTGCTAAGAtctattt
atcaaaaaaaggatAACCATCTGGGCAgcattttcgaaaactttatTTTC
GATGTCTCAGTCCTCTAATTCACTTTAAAATTCATGTGAGACATTTCTTA
TGGACCTCCTTATTTTACCTTGATTCTTAACCAGTCTCTATTTATAAATC
CTTGCAATCATTTGCATGGGGTTTTGGCGCCTGGGATTGTTAACGAAAGT
GATGTAAGCTTGCATTTTGCAGCGCATGCAGTCCACCGCAaatacaggag
aaaaaaattcgATTTCGATCTTGAAGCATGAGATTCAAGTGTATTTGTAC
AGGGTGTAAAAGTATTTAAAGATCACCATATCAATTATTTAcctaaaata
catttatttaaTTACAGTGAAATTACTAAAAACACGTTGAATTTTATCTA
AAATGCAGTTTTATTANATTTAAAGATTACCATATCAATTATTTAcctaa
aatacatttatttaaTTACAGTGAAATTACTAAAAACACGTTGAATTTTA
TCTAAAATGCAGTTTTATTATTAAAATATGTGAAAgtatcaaaatatttc
aagtcttcaaattgcatattttaggcGCTCGGAGGCCGCCCGGACTGGCC
CAGCAAGTCGTTTTTGAAAATCTATTAATTTTATCTGCCCAGACGCACCT
GGAGAAATGCTctattctaccatttttagaaTCTCATATTTGCCGTGCAA
CTAATTTTTGCAAGAAATGAATGAAACAGCGTgctttgataataaaaaat
catgctTGATCATAAATTTTAAGATGGCGGGAAAACGTTTCTCTAAGGCT
GCTGGACGTTTAACCTCAAATTTAATAATGATATTATATAgacataatta
tgcatgacatcACTTTATGATTAGGAGATATACATTTTACCACCCACAAA
TTTTGTAtaggtttgttttgttttaactttgtattttaatgaccttccag
gtcattcatttgagggctacacgtttccctccactgatgcaagtttttGT
CTGGATACCTACAacataaaatttgataaattataataagaattgaaaaa
ttcaaaaattatgtggtaaaatcttaaaattaaaaaaagctttgaaatgA
GAGGTTATAATGTGACCAAGAAAATACTGAGATTATAGATTTAGAAATTA
AAATCAGAAGCAGGAGTGTgataaaacctacaaaaaagcAGATTAAAACT
TTAGGACTACCTGCTCTGAACACAACAAAGTCGTtaaatttggttgaaat
tttgcagtGTTTTATCACGTTCTATGACTTTGGTTGACAGCTTTTAGACA
AGTTTTCACTATGAATTATTCTTAATAATTTTCAGAGTAATTTCAATACC
ACATCATGGCATTTCGATTGATATCACATCACAGGACTATGTTCAGCCCA
ATGATTACTGCTGCTCGTAGAATGCTGACAATTGACATCACTTCACCGCa
agaatttgatgaaaaagtcTTGAAATCTGAAGTCCCTGTTATCATAGATT
TTCACGCCACGTAAGAATTTATCTTGTTTGTATGCCTCCATACCTGCACT
TTCCTTGTATTTTTACTGTGTATTGATTAAATATACTTATCAAGCCTCAT
CCTATATATGAACACAATAAAATTTAATCTCACCTTTGTCAGTCCAACTG
ATCCAGCCAGCCCACCTCCTATGAAAAGCCCCTAAATACCATCTAACGAA
CTCCTACACCAAAACTCTATTCCCATATGACAGAAATCTCTATGGTGGAG
TACAAATTCATAGTGCGGAAAGAGATGTGACCTTCTCAAATGACCctccc
ttcttggcatccccaaccttaaaaaatgcctatcccccaaggattttgga
caaaaattgctaacaaatatatgtgaaatatctttagagagagaaagcga
aataataaacttctttcatCTTTTTGACTCATACTAATCTAAtagaaaac
ttcctttcatgaagaccaaatttcataacagtgcttgaaaataatctgcA
ATCAATATATATAAAGCCTCCCTTCTTAAACTATCCCTCTTCCTTGCTAC
CCcccttttttcatgaaaatttctgatcccccttcttcattttttcggag
gtttcacccccccccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccc
cccccccccccccttaagaaaggggggtccgaactatgaattaaattatt
tttaggcATTGGAATAAATTGCACTATGTATATACCAATGTAACAATGCA
AGCGTATCTAAGGTTTTTCAAAAGATTGCTCCTGCGTTTGTGTTTTCGAT
ACTGTCTTCGAAAAGAATTTGCATGTATTTTTGTGATCATCCTCTTCAAA
ATCTGACTGTGCCACGAAGGGCTGATGAATGTATTGATTGAATTTTAATT
TGAGATTTCCTCTTTAATTTCAAAGGTATCTGAAACAACAATAATCACAA
gtgaaacgaaaaaaaataaacctTTTACTCTAGCTTTCCTTCCACCCAGT
AGTATCAATGTTTGTATTTAGAGAAAAGTAGAGCTCAATTTCTATGTATA
GATATGCAAAGATATAAATAAGCCTTTTCAAAGTTTGGTCATTTCAATGT
CTATCTGacgttttttggccatttttatgGAAGTCAGCTTAAACTTTAAA
GCTGTTTCAATGTTTAGTGTCAGCAATTGggaggtttttttattttattt
tttaacttttattttatcctACTTTACTGGAATTGAATAAAATTGACTTC
TGAGTGAGGATTTCAGGGAATTTAATAAATATCCTTAAGTCTCACATCAG
AGTGATACCATCGTGAATTTCCAATGTGTAATGCTTTTTATCTGAAGGCT
TAAGAATTTTATGGGTCTGAACattattttaagaacatttaaattATAGA
GAGAAATCTTTACATATCTACTACCTTTTTAGATGTGACAAAATAACTAT
TGGGCAAGTACGCTTTGATTAAGTTTATTTTTGCTTATAATTTTAGACGG
CGTGGTCCTTGTAAGCAGAAGAACATTTGAACTAGTGAGAAATCTTCAGA
TATCCACTATCTTTTAGATGTTATAAATTAATTATCAAGCAATTACGCTT
TGATTAAGTTTATTTTCGTTTATAATTTTAGATGGTGTGGTCCTTGCAAG
CAGATGGATCCCACTCTGAAAAGTGTCATTCAGAATTACGAAGGGAAAAT
CAACTTGGTCAAAGTTGATGTTGATGAATTACAAGATTTAGCAATGGAAT
ATGATGTAAGCATCTTCATCTTGAATTAGCTCTGGTTTAGATGGCCAACT
TTTCGCCCGGTCTATTAAAATGGGCATaaagttggctgtctaaagtcgac
gcattgccctcttttgatgtcaatgcaatgacttatTTCAATCTATTTCG
AGCAAAAATTAtaactgccaactttgtgcccacttttgacctactctaac
aattagaataggtagGGCATGAATTCGGCTGTCTTAAACTAGAGCNCACt
gtaacaattagaataggtagGGCAGGAAGTCGGCTGTCTTAAACTAGAGC
TAACCGTTCCGTCCCCAATGAATGATAGCCAGTGTTTTGAAGCTGTTCAA
TTCACTGACGCTGCAATTATTTTCAACATAATAATTTTGTTACATGATAA
GATTTCCTTGGATCGGGTTAGGTTGACAGCATCCTTTACCATTTACTCGG
CTTTTGTAGCGCGTCCCTGTAGTATTTCTTTTATTATAAGGAATGCGAAG
CAGATTTGAAAAATCTCTCCGCTTAACAAATTTCTGTAATGTGACCCTTT
TTATTTAACCTTTGTCACCCAATTTagataaaaaaggaaatttatGAACT
TCTTTACCATAATACCCTTCCTCACTGGATTGATTCCAACGATTCCAAGA
AAGttatcaatcaaaaaatttgtgGGCGGTAATTCGCATCCCTTATAACA
AAATACATCAGAAGGAAGAAGGATGCTGCTAGCCTAGAGGTTTTGTAGGT
CTATGATTCAGACTATCCAAAAGACTTGTCTTACTTTATAATAAGTAACT
GATATGattgagtttttttaactttttgattcAGATACAACGGGATAGTT
TCAATATGCATTGTGTCTAGAAATTCTGCTGTAGAAGAACTAGCTTAACC
GTTAATCGGGGTGACTCTCAACATTGGGGAtaaaaggccggtctccactt
gagTGCGCAGCAATCGCACCTTTAACCTTTCATAAAAATGTAGTGCgggc
ttgaaaaaaaagttgaatacatttcaacttttttcaaccgttacgtcaga
ttgcgccaatggaattgttcgaaaaagtgcgatcgcagcgcgcgcaagtg
gagaccagcTTAAGTTCGATTTCCTTGTGCTCAAAGTCAGAGACTTACAG
TACAGCATAAAGCATACTTTACCTAGATCAGTGTGTTTCGACCGCATTCA
AAAACCATTCGTACTTTATCCTACTTAGTCTGCCTTTTTTGTGTTCCTCT
ACCTCCTAGGGCCTCATACTTTAATCGCATCTGATACGTGGGAATTAATC
CCTCgcttaaaggttttcttttacATGAAAGTGtatgttcccgtttcata
tcagggtaggtctgcctattgttatgttGTGCTGGTATAAGCAAAAAAGG
ATTTTATTTTCCTCTCtatctgaccaatcttgctccacatccatgtcaat
tcaatatcaaaaagcttgtaaatcaaaattaatgagtaagcaaacgatac
caCACACTTGccccttataaaaaaaaacaaaaaagctttaagtaCGAAAG
AAACTGTAAACGAGGtaaatatttattatttaaaatttacattatttttt
aGGTGATGTCTATTCCTTACCTGGTTGGCCTGAATAAAGGAAAAATCGTA
CAAACGGCTGTCGGTGCAAAACCACAAGATCAGATCATCCAATTTGTTGA
TGATGTATTGGCTGCTAGTCAATCTTAATGAGAACTAAAGTGATACctaa
aagtttgaattttctaACTGGTCCTTTAGCTCTTTATTTAGTATGGTGTG
GAGTGGAGTGGAGTGGAGTAATAATTACGCACGACTTGAAGATTAAAAGA
ATTTTCACTTGATGAATAAAATGTGAATGGAGGTGACACGCGATCGTCGT
GAAAACTAAATTAGGACGATAATGGAATGAAGAAAATTGTTCGTAATTTC
ATCTTTGACAGACTGTTTTTTAATatctacatttttatgacaatAGTTCA
GTCATTTAAGAGCTACTGATAGTATTTTGTATAGTAAGGAAAGCTTTGAA
CTTATCCCTTACGGGAAAATCCTAGGAATAAAAATGGCTCAGAgttatat
aaaaaagacttgACATGACTAattaacttttcataaaaagcGTTTCCTCC
GATTTTTGACTACCTGGACCTGACccaattattttcaaacttatttTACT
GATTGATTTACAGTACTTCCTTATGTTTTGTTGTGTGTTGTAAACATTAA
CTCGGGCTCCAGAAAGACACTGGAAAACTTGGAAATGAATGCTTTCAGGG
AAATCTCATAGAAAACTAGGGAGACTCTGAGaatttcagttaaaaaaaac
agaatagcTTCTATTTTAAGTTCCGGGGACATCATTTCTTGAATTTTCTC
TTTTCATAGCAAACCATTGTGGCTCCTTGAAGTCCcaaatcattttgatt
tttctatgaTGTCTAATCATACTGTTTCAAGAATTTTTCCCATGGTTCAT
CATCGATCAAGGGTTTCAGTTAGGGAAAAATTGCATGATTTCAGTCATTT
TTTCTGGGAAATTaagctttttttttcaaagataagGAAAAGtctttact
cttaggtgccaaataaacgggggggttggaaaattttcgaaattttaata
aacgggggggggacctaattgccggggggttggaaattgtacttctgaaa
accccaaaataaggtaaatataggctaaa

Coding sequence (CDS) from alignment at sc0000019:580862..593240+

>TCONS_00002257 ID=TCONS_00002257|Name=TCONS_00002257|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0000019:580862..593240+ (Clytia hemisphaerica)
ATGGCATTTCGATTGATATCACATCACAGGACTATGTTCAGCCCAATGAT
TACTGCTGCTCGTAGAATGCTGACAATTGACATCACTTCACCGCaagaat
ttgatgaaaaagtcTTGAAATCTGAAGTCCCTGTTATCATAGATTTTCAC
GCCACATGGTGTGGTCCTTGCAAGCAGATGGATCCCACTCTGAAAAGTGT
CATTCAGAATTACGAAGGGAAAATCAACTTGGTCAAAGTTGATGTTGATG
AATTACAAGATTTAGCAATGGAATATGATGTGATGTCTATTCCTTACCTG
GTTGGCCTGAATAAAGGAAAAATCGTACAAACGGCTGTCGGTGCAAAACC
ACAAGATCAGATCATCCAATTTGTTGATGATGTATTGGCTGCTAGTCAAT
CTTAAATGGCATTTCGATTGATATCACATCACAGGACTATGTTCAGCCCA
ATGATTACTGCTGCTCGTAGAATGCTGACAATTGACATCACTTCACCGCa
agaatttgatgaaaaagtcTTGAAATCTGAAGTCCCTGTTATCATAGATT
TTCACGCCACATGGTGTGGTCCTTGCAAGCAGATGGATCCCACTCTGAAA
AGTGTCATTCAGAATTACGAAGGGAAAATCAACTTGGTCAAAGTTGATGT
TGATGAATTACAAGATTTAGCAATGGAATATGATGTGATGTCTATTCCTT
ACCTGGTTGGCCTGAATAAAGGAAAAATCGTACAAACGGCTGTCGGTGCA
AAACCACAAGATCAGATCATCCAATTTGTTGATGATGTATTGGCTGCTAG
TCAATCTTAAATGGCATTTCGATTGATATCACATCACAGGACTATGTTCA
GCCCAATGATTACTGCTGCTCGTAGAATGCTGACAATTGACATCACTTCA
CCGCaagaatttgatgaaaaagtcTTGAAATCTGAAGTCCCTGTTATCAT
AGATTTTCACGCCACATGGTGTGGTCCTTGCAAGCAGATGGATCCCACTC
TGAAAAGTGTCATTCAGAATTACGAAGGGAAAATCAACTTGGTCAAAGTT
GATGTTGATGAATTACAAGATTTAGCAATGGAATATGATGTGATGTCTAT
TCCTTACCTGGTTGGCCTGAATAAAGGAAAAATCGTACAAACGGCTGTCG
GTGCAAAACCACAAGATCAGATCATCCAATTTGTTGATGATGTATTGGCT
GCTAGTCAATCTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001194	XLOC_001194	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002257-protein	TCONS_00002257-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002257-exon-sc0000019-1491911889:580862..581139	TCONS_00002257-exon-sc0000019-1491911889:580862..581139	Clytia hemisphaerica	exon
TCONS_00002257-exon-sc0000019-1510915933:580862..581139	TCONS_00002257-exon-sc0000019-1510915933:580862..581139	Clytia hemisphaerica	exon
TCONS_00002257-exon-sc0000019-1575043694:580862..581139	TCONS_00002257-exon-sc0000019-1575043694:580862..581139	Clytia hemisphaerica	exon
TCONS_00002257-exon-sc0000019-1491911889:588547..588721	TCONS_00002257-exon-sc0000019-1491911889:588547..588721	Clytia hemisphaerica	exon
TCONS_00002257-exon-sc0000019-1510915933:588547..588721	TCONS_00002257-exon-sc0000019-1510915933:588547..588721	Clytia hemisphaerica	exon
TCONS_00002257-exon-sc0000019-1575043694:588547..588721	TCONS_00002257-exon-sc0000019-1575043694:588547..588721	Clytia hemisphaerica	exon
TCONS_00002257-exon-sc0000019-1491911889:590393..590516	TCONS_00002257-exon-sc0000019-1491911889:590393..590516	Clytia hemisphaerica	exon
TCONS_00002257-exon-sc0000019-1510915933:590393..590516	TCONS_00002257-exon-sc0000019-1510915933:590393..590516	Clytia hemisphaerica	exon
TCONS_00002257-exon-sc0000019-1575043694:590393..590516	TCONS_00002257-exon-sc0000019-1575043694:590393..590516	Clytia hemisphaerica	exon
TCONS_00002257-exon-sc0000019-1491911889:592114..593240	TCONS_00002257-exon-sc0000019-1491911889:592114..593240	Clytia hemisphaerica	exon
TCONS_00002257-exon-sc0000019-1510915933:592114..593240	TCONS_00002257-exon-sc0000019-1510915933:592114..593240	Clytia hemisphaerica	exon
TCONS_00002257-exon-sc0000019-1575043694:592114..593240	TCONS_00002257-exon-sc0000019-1575043694:592114..593240	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000019	supercontig	sc0000019:580862..593240 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.984616	0.9934	0.954391	2.37839	3.04485	1.07575	3.71739	1.70874	3.02386	4.74228	2.7881	2.71148	2.31996	2.32331	0.642292	0.731261	2.02916	2.92252	0.330239	0.833642	0.834453	0	0.896573	0.56329	1.76809	2.90637	2.25928	1.65149	0	0.336788

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR005746	Thioredoxin
IPR013766	Thioredoxin_domain
IPR017937	Thioredoxin_CS
IPR012336	Thioredoxin-like_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Blast

[Close]

BLAST of TCONS_00002257 vs. Swiss-Prot (Human)
Match: THIOM (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.104e-24
Identity = 44/121 (36.36%), Postives = 77/121 (63.64%), Query Frame = 2

Query:  326 RTMFSPMITAARRMLTIDITSPQEFDEKVLKSEVPVIIDFHATWCGPCKQMDPTLKSVIQNYEGKINLVKVDVDELQDLAMEYDVMSIPYLVGLNKGKIVQTAVGAKPQDQIIQFVDDVLA 688
            RT+++  I+    + T +I    +F ++V+ SE PV++DFHA WCGPCK + P L+ ++    GK+ + KVD+D+  DLA+EY+V ++P ++ +  G +V   VG K +DQ+  F+  ++ 
Sbjct:   50 RTIYTTRIS----LTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 166

The following BLAST results are available for this feature:

BLAST of TCONS_00002257 vs. Swiss-Prot (Human)

BLAST of TCONS_00002257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
THIOM	3.104e-24	36.36	Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2...	[more]

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TCONS_00002257 (transcript) - C. hemisphaerica