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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002259 ID=TCONS_00002259|Name=TCONS_00002259|organism=Clytia hemisphaerica|type=transcript|length=1494bp
gaatattttggtGCGCGCAGCACTTTCGATTTGACTTGGAAGAGGTTGGA
CGCATTTTGACCAAAACAAGTAATTTCAATACCACATCATGGCATTTCGA
TTGATATCACATCACAGGACTATGTTCAGCCCAATGATTACTGCTGCTCG
TAGAATGCTGACAATTGACATCACTTCACCGCaagaatttgatgaaaaag
tcTTGAAATCTGAAGTCCCTGTTATCATAGATTTTCACGCCACATGGTGT
GGTCCTTGCAAGCAGATGGATCCCACTCTGAAAAGTGTCATTCAGAATTA
CGAAGGGAAAATCAACTTGGTCAAAGTTGATGTTGATGAATTACAAGATT
TAGCAATGGAATATGATGTGATGTCTATTCCTTACCTGGTTGGCCTGAAT
AAAGGAAAAATCGTACAAACGGCTGTCGGTGCAAAACCACAAGATCAGAT
CATCCAATTTGTTGATGATGTATTGGCTGCTAGTCAATCTTAATGAGAAC
TAAAGTGATACctaaaagtttgaattttctaACTGGTCCTTTAGCTCTTT
ATTTAGTATGGTGTGGAGTGGAGTGGAGTGGAGTAATAATTACGCACGAC
TTGAAGATTAAAAGAATTTTCACTTGATGAATAAAATGTGAATGGAGGTG
ACACGCGATCGTCGTGAAAACTAAATTAGGACGATAATGGAATGAAGAAA
ATTGTTCGTAATTTCATCTTTGACAGACTGTTTTTTAATatctacatttt
tatgacaatAGTTCAGTCATTTAAGAGCTACTGATAGTATTTTGTATAGT
AAGGAAAGCTTTGAACTTATCCCTTACGGGAAAATCCTAGGAATAAAAAT
GGCTCAGAgttatataaaaaagacttgACATGACTAattaacttttcata
aaaagcGTTTCCTCCGATTTTTGACTACCTGGACCTGACccaattatttt
caaacttatttTACTGATTGATTTACAGTACTTCCTTATGTTTTGTTGTG
TGTTGTAAACATTAACTCGGGCTCCAGAAAGACACTGGAAAACTTGGAAA
TGAATGCTTTCAGGGAAATCTCATAGAAAACTAGGGAGACTCTGAGaatt
tcagttaaaaaaaacagaatagcTTCTATTTTAAGTTCCGGGGACATCAT
TTCTTGAATTTTCTCTTTTCATAGCAAACCATTGTGGCTCCTTGAAGTCC
caaatcattttgatttttctatgaTGTCTAATCATACTGTTTCAAGAATT
TTTCCCATGGTTCATCATCGATCAAGGGTTTCAGTTAGGGAAAAATTGCA
TGATTTCAGTCATTTTTTCTGGGAAATTaagctttttttttcaaagataa
gGAAAAGtctttactcttaggtgccaaataaacgggggggttggaaaatt
ttcgaaattttaataaacgggggggggacctaattgccggggggttggaa
attgtacttctgaaaaccccaaaataaggtaaatataggctaaa Run BLAST on NCBI transcript from alignment at sc0000019:586602..593240+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002259 ID=TCONS_00002259|Name=TCONS_00002259|organism=Clytia hemisphaerica|type=transcript|length=6639bp|location=Sequence derived from alignment at sc0000019:586602..593240+ (Clytia hemisphaerica)
gaatattttggtGCGCGCAGCACTTTCGATTTGACTTGGAAGAGGTTGGA
CGCATTTTGACCAAAACAGTGAGTTCTTCACAATCCGTTTTTCTTATATC
TTTTGAAGTACTTTATCATTTCTCAAAGGtaaccccaaattttttttctt
atgcttAGGGCTATCAGATGAGCCTACTTTTGTTTCTTCTgattaagttt
gaaaatttggtTGACTCCCCTACTTAAAAGCTAAAATCTGTTTTTTGGAG
ATTACAAAAAAAcaccacatagaagatctttcaaattcagtatgtgaata
gagcaataaaaaatacaacttttctatttttccttttttttgcaaaattt
ctaggaatgaaaatagaGGGATAATACTATTGTCTATTGATGATCCGCCG
ACTATCGTAATAGTGCTCTTCCCTTGAGACAATGATTGACAAATTTTTCA
CCCGCGTGGGAGCTTGCAGTGATTCTGCAAGCGTTCTGTAAGCATTCTCG
GCTCAATTCCTGTGCCaggctaaaatggtagacttagctgtgacagatca
tttcaCGACCCTTGAACACGCCCGGATGCCGCCCGAAATATTCCGTGCTA
AGAtctatttatcaaaaaaaggatAACCATCTGGGCAgcattttcgaaaa
ctttatTTTCGATGTCTCAGTCCTCTAATTCACTTTAAAATTCATGTGAG
ACATTTCTTATGGACCTCCTTATTTTACCTTGATTCTTAACCAGTCTCTA
TTTATAAATCCTTGCAATCATTTGCATGGGGTTTTGGCGCCTGGGATTGT
TAACGAAAGTGATGTAAGCTTGCATTTTGCAGCGCATGCAGTCCACCGCA
aatacaggagaaaaaaattcgATTTCGATCTTGAAGCATGAGATTCAAGT
GTATTTGTACAGGGTGTAAAAGTATTTAAAGATCACCATATCAATTATTT
AcctaaaatacatttatttaaTTACAGTGAAATTACTAAAAACACGTTGA
ATTTTATCTAAAATGCAGTTTTATTANATTTAAAGATTACCATATCAATT
ATTTAcctaaaatacatttatttaaTTACAGTGAAATTACTAAAAACACG
TTGAATTTTATCTAAAATGCAGTTTTATTATTAAAATATGTGAAAgtatc
aaaatatttcaagtcttcaaattgcatattttaggcGCTCGGAGGCCGCC
CGGACTGGCCCAGCAAGTCGTTTTTGAAAATCTATTAATTTTATCTGCCC
AGACGCACCTGGAGAAATGCTctattctaccatttttagaaTCTCATATT
TGCCGTGCAACTAATTTTTGCAAGAAATGAATGAAACAGCGTgctttgat
aataaaaaatcatgctTGATCATAAATTTTAAGATGGCGGGAAAACGTTT
CTCTAAGGCTGCTGGACGTTTAACCTCAAATTTAATAATGATATTATATA
gacataattatgcatgacatcACTTTATGATTAGGAGATATACATTTTAC
CACCCACAAATTTTGTAtaggtttgttttgttttaactttgtattttaat
gaccttccaggtcattcatttgagggctacacgtttccctccactgatgc
aagtttttGTCTGGATACCTACAacataaaatttgataaattataataag
aattgaaaaattcaaaaattatgtggtaaaatcttaaaattaaaaaaagc
tttgaaatgAGAGGTTATAATGTGACCAAGAAAATACTGAGATTATAGAT
TTAGAAATTAAAATCAGAAGCAGGAGTGTgataaaacctacaaaaaagcA
GATTAAAACTTTAGGACTACCTGCTCTGAACACAACAAAGTCGTtaaatt
tggttgaaattttgcagtGTTTTATCACGTTCTATGACTTTGGTTGACAG
CTTTTAGACAAGTTTTCACTATGAATTATTCTTAATAATTTTCAGAGTAA
TTTCAATACCACATCATGGCATTTCGATTGATATCACATCACAGGACTAT
GTTCAGCCCAATGATTACTGCTGCTCGTAGAATGCTGACAATTGACATCA
CTTCACCGCaagaatttgatgaaaaagtcTTGAAATCTGAAGTCCCTGTT
ATCATAGATTTTCACGCCACGTAAGAATTTATCTTGTTTGTATGCCTCCA
TACCTGCACTTTCCTTGTATTTTTACTGTGTATTGATTAAATATACTTAT
CAAGCCTCATCCTATATATGAACACAATAAAATTTAATCTCACCTTTGTC
AGTCCAACTGATCCAGCCAGCCCACCTCCTATGAAAAGCCCCTAAATACC
ATCTAACGAACTCCTACACCAAAACTCTATTCCCATATGACAGAAATCTC
TATGGTGGAGTACAAATTCATAGTGCGGAAAGAGATGTGACCTTCTCAAA
TGACCctcccttcttggcatccccaaccttaaaaaatgcctatcccccaa
ggattttggacaaaaattgctaacaaatatatgtgaaatatctttagaga
gagaaagcgaaataataaacttctttcatCTTTTTGACTCATACTAATCT
AAtagaaaacttcctttcatgaagaccaaatttcataacagtgcttgaaa
ataatctgcAATCAATATATATAAAGCCTCCCTTCTTAAACTATCCCTCT
TCCTTGCTACCCcccttttttcatgaaaatttctgatcccccttcttcat
tttttcggaggtttcacccccccccccccccccNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNccccccccccccccccttaagaaaggggggtccgaactatgaa
ttaaattatttttaggcATTGGAATAAATTGCACTATGTATATACCAATG
TAACAATGCAAGCGTATCTAAGGTTTTTCAAAAGATTGCTCCTGCGTTTG
TGTTTTCGATACTGTCTTCGAAAAGAATTTGCATGTATTTTTGTGATCAT
CCTCTTCAAAATCTGACTGTGCCACGAAGGGCTGATGAATGTATTGATTG
AATTTTAATTTGAGATTTCCTCTTTAATTTCAAAGGTATCTGAAACAACA
ATAATCACAAgtgaaacgaaaaaaaataaacctTTTACTCTAGCTTTCCT
TCCACCCAGTAGTATCAATGTTTGTATTTAGAGAAAAGTAGAGCTCAATT
TCTATGTATAGATATGCAAAGATATAAATAAGCCTTTTCAAAGTTTGGTC
ATTTCAATGTCTATCTGacgttttttggccatttttatgGAAGTCAGCTT
AAACTTTAAAGCTGTTTCAATGTTTAGTGTCAGCAATTGggaggtttttt
tattttattttttaacttttattttatcctACTTTACTGGAATTGAATAA
AATTGACTTCTGAGTGAGGATTTCAGGGAATTTAATAAATATCCTTAAGT
CTCACATCAGAGTGATACCATCGTGAATTTCCAATGTGTAATGCTTTTTA
TCTGAAGGCTTAAGAATTTTATGGGTCTGAACattattttaagaacattt
aaattATAGAGAGAAATCTTTACATATCTACTACCTTTTTAGATGTGACA
AAATAACTATTGGGCAAGTACGCTTTGATTAAGTTTATTTTTGCTTATAA
TTTTAGACGGCGTGGTCCTTGTAAGCAGAAGAACATTTGAACTAGTGAGA
AATCTTCAGATATCCACTATCTTTTAGATGTTATAAATTAATTATCAAGC
AATTACGCTTTGATTAAGTTTATTTTCGTTTATAATTTTAGATGGTGTGG
TCCTTGCAAGCAGATGGATCCCACTCTGAAAAGTGTCATTCAGAATTACG
AAGGGAAAATCAACTTGGTCAAAGTTGATGTTGATGAATTACAAGATTTA
GCAATGGAATATGATGTAAGCATCTTCATCTTGAATTAGCTCTGGTTTAG
ATGGCCAACTTTTCGCCCGGTCTATTAAAATGGGCATaaagttggctgtc
taaagtcgacgcattgccctcttttgatgtcaatgcaatgacttatTTCA
ATCTATTTCGAGCAAAAATTAtaactgccaactttgtgcccacttttgac
ctactctaacaattagaataggtagGGCATGAATTCGGCTGTCTTAAACT
AGAGCNCACtgtaacaattagaataggtagGGCAGGAAGTCGGCTGTCTT
AAACTAGAGCTAACCGTTCCGTCCCCAATGAATGATAGCCAGTGTTTTGA
AGCTGTTCAATTCACTGACGCTGCAATTATTTTCAACATAATAATTTTGT
TACATGATAAGATTTCCTTGGATCGGGTTAGGTTGACAGCATCCTTTACC
ATTTACTCGGCTTTTGTAGCGCGTCCCTGTAGTATTTCTTTTATTATAAG
GAATGCGAAGCAGATTTGAAAAATCTCTCCGCTTAACAAATTTCTGTAAT
GTGACCCTTTTTATTTAACCTTTGTCACCCAATTTagataaaaaaggaaa
tttatGAACTTCTTTACCATAATACCCTTCCTCACTGGATTGATTCCAAC
GATTCCAAGAAAGttatcaatcaaaaaatttgtgGGCGGTAATTCGCATC
CCTTATAACAAAATACATCAGAAGGAAGAAGGATGCTGCTAGCCTAGAGG
TTTTGTAGGTCTATGATTCAGACTATCCAAAAGACTTGTCTTACTTTATA
ATAAGTAACTGATATGattgagtttttttaactttttgattcAGATACAA
CGGGATAGTTTCAATATGCATTGTGTCTAGAAATTCTGCTGTAGAAGAAC
TAGCTTAACCGTTAATCGGGGTGACTCTCAACATTGGGGAtaaaaggccg
gtctccacttgagTGCGCAGCAATCGCACCTTTAACCTTTCATAAAAATG
TAGTGCgggcttgaaaaaaaagttgaatacatttcaacttttttcaaccg
ttacgtcagattgcgccaatggaattgttcgaaaaagtgcgatcgcagcg
cgcgcaagtggagaccagcTTAAGTTCGATTTCCTTGTGCTCAAAGTCAG
AGACTTACAGTACAGCATAAAGCATACTTTACCTAGATCAGTGTGTTTCG
ACCGCATTCAAAAACCATTCGTACTTTATCCTACTTAGTCTGCCTTTTTT
GTGTTCCTCTACCTCCTAGGGCCTCATACTTTAATCGCATCTGATACGTG
GGAATTAATCCCTCgcttaaaggttttcttttacATGAAAGTGtatgttc
ccgtttcatatcagggtaggtctgcctattgttatgttGTGCTGGTATAA
GCAAAAAAGGATTTTATTTTCCTCTCtatctgaccaatcttgctccacat
ccatgtcaattcaatatcaaaaagcttgtaaatcaaaattaatgagtaag
caaacgataccaCACACTTGccccttataaaaaaaaacaaaaaagcttta
agtaCGAAAGAAACTGTAAACGAGGtaaatatttattatttaaaatttac
attattttttaGGTGATGTCTATTCCTTACCTGGTTGGCCTGAATAAAGG
AAAAATCGTACAAACGGCTGTCGGTGCAAAACCACAAGATCAGATCATCC
AATTTGTTGATGATGTATTGGCTGCTAGTCAATCTTAATGAGAACTAAAG
TGATACctaaaagtttgaattttctaACTGGTCCTTTAGCTCTTTATTTA
GTATGGTGTGGAGTGGAGTGGAGTGGAGTAATAATTACGCACGACTTGAA
GATTAAAAGAATTTTCACTTGATGAATAAAATGTGAATGGAGGTGACACG
CGATCGTCGTGAAAACTAAATTAGGACGATAATGGAATGAAGAAAATTGT
TCGTAATTTCATCTTTGACAGACTGTTTTTTAATatctacatttttatga
caatAGTTCAGTCATTTAAGAGCTACTGATAGTATTTTGTATAGTAAGGA
AAGCTTTGAACTTATCCCTTACGGGAAAATCCTAGGAATAAAAATGGCTC
AGAgttatataaaaaagacttgACATGACTAattaacttttcataaaaag
cGTTTCCTCCGATTTTTGACTACCTGGACCTGACccaattattttcaaac
ttatttTACTGATTGATTTACAGTACTTCCTTATGTTTTGTTGTGTGTTG
TAAACATTAACTCGGGCTCCAGAAAGACACTGGAAAACTTGGAAATGAAT
GCTTTCAGGGAAATCTCATAGAAAACTAGGGAGACTCTGAGaatttcagt
taaaaaaaacagaatagcTTCTATTTTAAGTTCCGGGGACATCATTTCTT
GAATTTTCTCTTTTCATAGCAAACCATTGTGGCTCCTTGAAGTCCcaaat
cattttgatttttctatgaTGTCTAATCATACTGTTTCAAGAATTTTTCC
CATGGTTCATCATCGATCAAGGGTTTCAGTTAGGGAAAAATTGCATGATT
TCAGTCATTTTTTCTGGGAAATTaagctttttttttcaaagataagGAAA
AGtctttactcttaggtgccaaataaacgggggggttggaaaattttcga
aattttaataaacgggggggggacctaattgccggggggttggaaattgt
acttctgaaaaccccaaaataaggtaaatataggctaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002259-exon-sc0000019-1491911889:586602..586669 | TCONS_00002259-exon-sc0000019-1491911889:586602..586669 | Clytia hemisphaerica | exon |
| TCONS_00002259-exon-sc0000019-1510915933:586602..586669 | TCONS_00002259-exon-sc0000019-1510915933:586602..586669 | Clytia hemisphaerica | exon |
| TCONS_00002259-exon-sc0000019-1575043694:586602..586669 | TCONS_00002259-exon-sc0000019-1575043694:586602..586669 | Clytia hemisphaerica | exon |
| TCONS_00002259-exon-sc0000019-1491911889:588547..588721 | TCONS_00002259-exon-sc0000019-1491911889:588547..588721 | Clytia hemisphaerica | exon |
| TCONS_00002259-exon-sc0000019-1510915933:588547..588721 | TCONS_00002259-exon-sc0000019-1510915933:588547..588721 | Clytia hemisphaerica | exon |
| TCONS_00002259-exon-sc0000019-1575043694:588547..588721 | TCONS_00002259-exon-sc0000019-1575043694:588547..588721 | Clytia hemisphaerica | exon |
| TCONS_00002259-exon-sc0000019-1491911889:590393..590516 | TCONS_00002259-exon-sc0000019-1491911889:590393..590516 | Clytia hemisphaerica | exon |
| TCONS_00002259-exon-sc0000019-1510915933:590393..590516 | TCONS_00002259-exon-sc0000019-1510915933:590393..590516 | Clytia hemisphaerica | exon |
| TCONS_00002259-exon-sc0000019-1575043694:590393..590516 | TCONS_00002259-exon-sc0000019-1575043694:590393..590516 | Clytia hemisphaerica | exon |
| TCONS_00002259-exon-sc0000019-1491911889:592114..593240 | TCONS_00002259-exon-sc0000019-1491911889:592114..593240 | Clytia hemisphaerica | exon |
| TCONS_00002259-exon-sc0000019-1510915933:592114..593240 | TCONS_00002259-exon-sc0000019-1510915933:592114..593240 | Clytia hemisphaerica | exon |
| TCONS_00002259-exon-sc0000019-1575043694:592114..593240 | TCONS_00002259-exon-sc0000019-1575043694:592114..593240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:586602..593240 + |
Blast
BLAST of TCONS_00002259 vs. Swiss-Prot (Human)
Match: THIOM (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 1.687e-24 Identity = 44/121 (36.36%), Postives = 77/121 (63.64%), Query Frame = 2
Query: 116 RTMFSPMITAARRMLTIDITSPQEFDEKVLKSEVPVIIDFHATWCGPCKQMDPTLKSVIQNYEGKINLVKVDVDELQDLAMEYDVMSIPYLVGLNKGKIVQTAVGAKPQDQIIQFVDDVLA 478
RT+++ I+ + T +I +F ++V+ SE PV++DFHA WCGPCK + P L+ ++ GK+ + KVD+D+ DLA+EY+V ++P ++ + G +V VG K +DQ+ F+ ++
Sbjct: 50 RTIYTTRIS----LTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 166
The following BLAST results are available for this feature:
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