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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002261 ID=TCONS_00002261|Name=TCONS_00002261|organism=Clytia hemisphaerica|type=transcript|length=1176bp
AATCAATATTCTGTTACAGTACATAAAAAgctttttctcaaaaacaattt
tgtgtGCAGGTTGCACATACTGTAGTGCAGATTGAAAgagagattttatt
tatttccgaAACATTTCGACTACAGAGAGAAGTATTTTTGAACGAGAGAA
GAAAGCTAGTGTTATTAAATTTAGGCGACCTCTTGAAAAGGAAATCATTC
TCTACATTATAAATAGGCAGTCATGACAAGCAAAAGTGCCATTCGACAAA
ACTACAATGGTGATTGTGAAGCTCTCGTCAACAAGCATGCAAATATGGAG
TTGTACGCATCTTACctttatacttcattgaGTTTCCATTTCGATCGTTC
AGACATTTCGTCTCACGGATATTCTCAATTCTTCAAGAAAATGTCAACAA
AGAAATCTTCTGCTGCACACGAGtttttaaaGTATCAAAACAAGCGTGGA
GGGCGTGTATGTTTCCAAGACATAAGTACGCCACCAGTTGAATGGAAAAC
GCCCGATGACGCCCTTCAAGAATcacttgaaattgaaaagagaatAAATG
CACATCTAATCGCATTGAAATCTACAGCAGACGCAAATAAAGATGCTCAT
CTAGAACACTTCTTAGATGGTCATATAGACTCTGTTGTGGAATGCATCAA
TACTTTTGGTCACTTGATAACGAATTTGAAACGTTGTGGTACTGGACTTG
GTGGCTACCAGTTTGATCATCTAACCATGGAGAAAATGTAATTTTGTTCG
TCAattaattttctgaaatttaacattatatatataCTGATTCCAGGTAT
ACTCCAATATGCTCATTTGACcaagtgaaaatttgaattgtttctTTTAG
TTCTTTGATGTTCTCATTTACGACAAAATTATGtatggatttttttttga
acTATGATTAATACTTTAACTTTATTGggcaactttttttaaaaacagaa
aacGCATGTAATTCCTGCTTGGTTTtagttttctgaattttatttccttc
cagggtcggatacaggaggcaggctatcttattcatggagagtaattagt
ttccatataaggtaatacgataataaagtgcactctcctccattggttat
agcctccctctgtatccgagcctgcaTTCTGGCTTGAAACCTACTTATTA
GGTGAAAATTTTGAGgtgatggtttg Run BLAST on NCBI transcript from alignment at sc0000019:595141..599396+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002261 ID=TCONS_00002261|Name=TCONS_00002261|organism=Clytia hemisphaerica|type=transcript|length=4256bp|location=Sequence derived from alignment at sc0000019:595141..599396+ (Clytia hemisphaerica)
AATCAATATTCTGTTACAGTACATAAAAAgctttttctcaaaaacaattt
tgtgtGCAGGTTGCACATACTGTAGTGCAGATTGAAAgagagattttatt
tatttccgaAACATTTCGACTACAGAGAGAAGTATTTTTGAACGAGAGAA
GAAAGCTAGTGTTATTAAATTTAGGCGACCTCTTGAAAAGGAAATCATTC
TCTACATTATAAATAGGCAGGTATTCTTTTACTTTCTTGTTCCTTTCTCA
GATTGTTTACGCTTCAATAACGTGGAAAGCTAACAACGACGAAAGCTTTT
TTCAGAATCTCAGACCCCGATTCAATAGTCCTATAGGAGATGGTACTACC
AACTTTGTTTGACAGTTTCTCCAGCTCTTTTTTTTCCGTCGATTTCTATG
GTTACGACGGAATTTTGGTAAACGTCAACCAAGATGGAAGTACCATCTCC
TAGAGAACTATAATTCATACCGTGAAGtcgagtaacttgcatcagtggag
ggaatacttgcatagccatcaaatgactaacgaatcaaagcagcaaaatt
tcaaaacaaatggtacgcagctctgctcgcagctctactctaccattttt
gatttgatttaactTAGTATTTGATTTCTCTTTGTATTGACCAGCCAgtt
cattcatttgagggctatgcatgttagcctcaattgatgcaagttacccg
atctcacggtaatGGTCCTGGCTTCAGCAACGGGTCAATTCATCGGGGCA
TTTCTCGGACAGTGTGCTTTGTGCGTCTAAtgtgatgttttttttataat
agatTCGAAAAGTGAATAAAGAAAAGAAGTATAaacactttctttctttt
ttgactttttttttgccaaaattgaaaaagagaGTTAGTGTAAGTTAGTG
GATGAAAGTTCGTagcgaaatcccaatggggatagaaattctattgttcc
tagGTAAAAAATCTGACGGGAAtagttttgaagtgcaattttttaccaTT
GAATTTACAATGGGAATAAAAACATAATCAATTTCCTAGTGGGACTAAAA
TTGTGGGTTGTTTTTTTCCACCGGATACAAAATTTTAGCAATATTTTCCg
gcgggtctatgacacagtGTTGTTCAAAGGCTCGAAATTACTTTCAACAT
AAATAAGACTCGTCCATCATTGCATTTTAGTCATGACAAGCAAAAGTGCC
ATTCGACAAAACTACAATGGTGATTGTGAAGCTCTCGTCAACAAGCATGC
AAATATGGAGTTGTACGCATCTTACctttatacttcattggtaaGTTaaa
ctcccttctcacagacccaatcGGGATTTTTCAACAGCGAGAATAAAAGT
AACGGACTGAAAATCGATGGGGATCAAAGTCAGAGAATTCATTAGAGAAT
ATATTGTcagaaagttgataaaatgtcttTAGCAGGGACATGACGAAATA
TTGTGGAAAAAGAGAAGCTTTAAAATTTCTATGGCACTACTTGCTCCGaa
agtaaataaatttttgtctgACCATATTCTTTTTTTCCCACCCTATATTG
TCAAATCCTAAATCGTTGGTTACTTAATTTCAGAATTTATTCATTTAATT
TTCAGAGGCGCACGGGGTCAAAAATTCGAGTATAAATTTCCACCGGGGAa
gatattttttccaatttttccagtaggaGAGGGTCCCACTGGGTCCATAA
GAAAGTTGTACTAATCAAGTTCGAGGGTAAGATTTCCTACCATTAATGAA
CTTGCAAAATCATAAGAAACACCTGGATTTATTTTACTTGCACACCTAAC
TTACCTGTTCACTTAAGactattttttgtgatttcagaGTTTCCATTTCG
ATCGTTCAGACATTTCGTCTCACGGATATTCTCAATTCTTCAAGAAAATG
TCAACAAAGAAATCTTCTGCTGCACACGAGGTGAGTATTTAacaaaccca
gctggcacacaacgttgtttcaacgtttttctaacgttatatggacgttg
taaacgttagaaaaacgtcgaaacaacgttgtgtgccagctgtgAACAAA
TATAACCATTTCTTGCCATACCTATTCTTATTGTGAATCAAAAAGGGTAG
AAAATAAGCAGACTAAAGTCAACGTGTTTCCCTCTATTATGACGTcacta
caatgacttctttaaatctttttcaGCCCACTTTTTACCTACTATAACAA
TTAATATTGGCAGGGCagaaatttggccctgtttaaACTAGAGTCAACTT
AAAGGGGAACTcagcaaatttttcatttttatttttttcctgatttttgg
taatattaagtataaaaatgagaaagaaagtatATAGGTTCGATctctca
aataaaaatcatgANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTCTTCACTGATTTTTAGCCTGAGAAGATAAGCATCTTCCTCTTTC
TGAATGCAGCTACGTCATAAAACAGCTGAAAGTgcgtcttttttatttga
taaacaaGTCCATTTTAGTAGAGGGGAGCCTCTATTTAAAAGCTCATTAA
ACTAATTTTTAGAGTGAAAGGAGAGTtgcaaccttgaaattttgaaattt
atcgttgaaacaaaccatttcaggatagaaacaaaaaaatccaaaatttg
ttgagttcccctttaaaTAATCTTTTGTTGACCACATGAACAAATCAAAT
CTAGTTGACAGCCATAGCCTAGTCTTAATCCCTTAAAAAGatctttcttt
cagtttttaaaGTATCAAAACAAGCGTGGAGGGCGTGTATGTTTCCAAGA
CATAAGTACGCCACCAGTTGAATGGAAAACGCCCGATGACGCCCTTCAAG
AATcacttgaaattgaaaagagaatAAATGCACATCTAATCGCATTGAAA
TCTACAGCAGACGCAAATAAAGATGCTCATCTAGAACACTTCTTAGATGG
TCATATAGACTCTGTTGTGGAATGCATCAATACTTTTGGTCACTTGATAA
CGAATTTGAAACGTTGTGGTACTGGACTTGGTGGCTACCAGTTTGATCAT
CTAACCATGGAGAAAATGTAATTTTGTTCGTCAattaattttctgaaatt
taacattatatatataCTGATTCCAGGTATACTCCAATATGCTCATTTGA
CcaagtgaaaatttgaattgtttctTTTAGTTCTTTGATGTTCTCATTTA
CGACAAAATTATGtatggatttttttttgaacTATGATTAATACTTTAAC
TTTATTGggcaactttttttaaaaacagaaaacGCATGTAATTCCTGCTT
GGTTTtagttttctgaattttatttccttccagggtcggatacaggaggc
aggctatcttattcatggagagtaattagtttccatataaggtaatacga
taataaagtgcactctcctccattggttatagcctccctctgtatccgag
cctgcaTTCTGGCTTGAAACCTACTTATTAGGTGAAAATTTTGAGgtgat
ggtttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002261-exon-sc0000019-1491911889:595141..595360 | TCONS_00002261-exon-sc0000019-1491911889:595141..595360 | Clytia hemisphaerica | exon |
| TCONS_00002261-exon-sc0000019-1510915933:595141..595360 | TCONS_00002261-exon-sc0000019-1510915933:595141..595360 | Clytia hemisphaerica | exon |
| TCONS_00002261-exon-sc0000019-1575043694:595141..595360 | TCONS_00002261-exon-sc0000019-1575043694:595141..595360 | Clytia hemisphaerica | exon |
| TCONS_00002261-exon-sc0000019-1491911889:596321..596430 | TCONS_00002261-exon-sc0000019-1491911889:596321..596430 | Clytia hemisphaerica | exon |
| TCONS_00002261-exon-sc0000019-1510915933:596321..596430 | TCONS_00002261-exon-sc0000019-1510915933:596321..596430 | Clytia hemisphaerica | exon |
| TCONS_00002261-exon-sc0000019-1575043694:596321..596430 | TCONS_00002261-exon-sc0000019-1575043694:596321..596430 | Clytia hemisphaerica | exon |
| TCONS_00002261-exon-sc0000019-1491911889:596978..597070 | TCONS_00002261-exon-sc0000019-1491911889:596978..597070 | Clytia hemisphaerica | exon |
| TCONS_00002261-exon-sc0000019-1510915933:596978..597070 | TCONS_00002261-exon-sc0000019-1510915933:596978..597070 | Clytia hemisphaerica | exon |
| TCONS_00002261-exon-sc0000019-1575043694:596978..597070 | TCONS_00002261-exon-sc0000019-1575043694:596978..597070 | Clytia hemisphaerica | exon |
| TCONS_00002261-exon-sc0000019-1491911889:598644..599396 | TCONS_00002261-exon-sc0000019-1491911889:598644..599396 | Clytia hemisphaerica | exon |
| TCONS_00002261-exon-sc0000019-1510915933:598644..599396 | TCONS_00002261-exon-sc0000019-1510915933:598644..599396 | Clytia hemisphaerica | exon |
| TCONS_00002261-exon-sc0000019-1575043694:598644..599396 | TCONS_00002261-exon-sc0000019-1575043694:598644..599396 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:595141..599396 + |
Blast
BLAST of TCONS_00002261 vs. Swiss-Prot (Human)
Match: FRIL (Ferritin light chain OS=Homo sapiens GN=FTL PE=1 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 8.865e-39 Identity = 74/171 (43.27%), Postives = 101/171 (59.06%), Query Frame = 1
Query: 235 SAIRQNYNGDCEALVNKHANMELYASYLYTSLSFHFDRSDISSHGYSQFFKKMSTKKSSAAHEFLKYQNKRGGRVCFQDISTPPV-EWKTPDDALQESLEIEKRINAHLIALKSTADANKDAHLEHFLDGH-IDSVVECINTFGHLITNLKRCG---TGLGGYQFDHLTME 732
S IRQNY+ D EA VN N+ L ASY Y SL F+FDR D++ G S FF++++ +K LK QN+RGGR FQDI P EW DA++ ++ +EK++N L+ L + A D HL FL+ H +D V+ I G +TNL R G GLG Y F+ LT++
Sbjct: 3 SQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLK 173
The following BLAST results are available for this feature:
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