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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002264 ID=TCONS_00002264|Name=TCONS_00002264|organism=Clytia hemisphaerica|type=transcript|length=4391bpRun BLAST on NCBI protein sequence of TCONS_00002264-protein >TCONS_00002264-protein ID=TCONS_00002264-protein|Name=TCONS_00002264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=680bp MANDEAASGSWFGKFYFVIVHFVLFLLGFYLIQTKAKFIEDSEKQKNVKKRun BLAST on NCBI transcript from alignment at sc0000019:625236..639962+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002264 ID=TCONS_00002264|Name=TCONS_00002264|organism=Clytia hemisphaerica|type=transcript|length=14727bp|location=Sequence derived from alignment at sc0000019:625236..639962+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000019:625236..639962+ >TCONS_00002264 ID=TCONS_00002264|Name=TCONS_00002264|organism=Clytia hemisphaerica|type=CDS|length=26559bp|location=Sequence derived from alignment at sc0000019:625236..639962+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002264 vs. Swiss-Prot (Human)
Match: GRCR1 (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Homo sapiens GN=GRXCR1 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 8.888e-17 Identity = 49/152 (32.24%), Postives = 85/152 (55.92%), Query Frame = -1
Query: 213 IIIYTTSLGIIRKTKGDCLYLMNVFRSMMLETEERDIV-----SKYYHDEFKKLFPNSSLPQVVINSFPVGGRKEIENLIETGEINLLTKNIEKVQYSSIKCLKCNGYGYLPCPMCLGSCRSRIIRIGKSREVNNLKCTQCKE-GMVRCMDC 650
++IYTT L ++R T C + +F++ ++ EE++I K + +++ SLP V I+ +GG ++I ++ E+GE+ + IE+VQ+ +C C G+G+LPC +C GS + + R + LKCT C E G+ RC +C
Sbjct: 139 VVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGEYGKELDERCRRVSEAPSLPVVFIDGHYLGGAEKILSMNESGELQDILTKIERVQHPH-ECPSCGGFGFLPCSVCHGS-KMSMFRNCFTDSFKALKCTACNENGLQRCKNC 288 The following BLAST results are available for this feature:
BLAST of TCONS_00002264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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