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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002270 ID=TCONS_00002270|Name=TCONS_00002270|organism=Clytia hemisphaerica|type=transcript|length=2097bp
TAGCAAAACAGGAAGGATTTCGTTCCAGATCAAACCACATAAAACAATTG
TGGAAAACGCACCATAAGGAAACAGCGATGGATGCTGAACACAAAATTAA
TTTACAACTTGgtttattctcttttttaatgatCTTGGGAATTCTTGGCA
ATGTCCTGGTCATTTATGTGTACTCCAGGGCTAAAAACCGCAAACGTTTT
CTCAAGTTTGAACGGATGATACTGATTTTGGCAGTTGTTGATTTGCTGGC
ATCGACTATCAACCCTGCTTTCTACATctaccaaatcaaaacaaactaca
AAAGTTGGCATTTTGGTTACGCTGGCTGTAAAGTCATCCCCGCCCTTGGA
CCGATCTTCTCCGCTATCTCTCTTGGTTTGATCTTACTTATGGCTATAGA
TCGAGACCGCGCTGTATGCACACCCTTCAAGAAGCAGTTCTCTTTGAGTA
CCCTCTACAAAGCGATCGCTGTGACCATATTCTTATCAATTGGTATAAAC
GTCCCATACATGTATTTTCTAGATGTCCACGAAGGCGGAAAACGTTGCTT
GATCGGGCGGAAGGGTGCTTTACTATACATAAAATCCTTAGTCAGTATCA
ATATCATCAGTGATACCTGCTTCTTTCTAATCTTTTCAGTGACAACCGTA
AGAGTCTGCTTGAAGCTAGCGTACAAGACGCAGTTAACGTATCCCCGTTC
AAGAGAGTTTCGCGCACGTGAAACACGCCGTATCTTGAAAATGATCGTCT
CGATGGGTGTATGTTTCATAGCCCTTATATTCCCACGAGACATTTTCATC
ACAACAACGTACATGTCGTATCTACACCCACCACcaatcaaagtcaaaaa
ttactTCATGGTGAATGCAATCTTAAAAGTCATCCACACGTCAAACAGCG
TCGTTAACGTCTTCCTGTATTCCGTCTTCAACCGTCGTTTCCGGCGTGAC
GCACTCCACCTATTCATGCAGTTCAAATATATCCGACAACTATCGGGATA
CACGTCTGAAGACAGCAGCTACTATTCCGACGACGGTGCCAGTAGTCGAC
GATTTTCATCCCGTAAGCAATCCGACATGAACCAATCAAAACGACTTCAG
GTGTTACGATCCATAAGTGTCTTCAAAACGGAAGTTTCATCAATCAATTC
TTCAATTCAACCCTCATTGCAAACATCTCCGGACATGACCAAAAGATCCA
ACGGAACTCATACACCACAGTATGTAGCAAACGCACCGGGTACTCCCTAC
ATCGGAGTATCACATCTGGAAGACGGGGAAAAAGAAAAGGTGGTCCGGAT
AGCAACACCACCGACGGTAGCCGAAAAGCGTCCAAAACATGAAACAACCA
TCACTCAAACTATCGATCATCTAAACATCATGGAAGACCCAACTCCCAAA
TGTTCAATATCACCACGTGATCTTAACAATCCAATTTTCGGTGACGTAGA
AATCGACCATATTAAagaagatgatgaaaatgatgatgatCGTTTCGACG
AAATGATAATGTCAGCATCTTTGATAAACGAACAATCACCTATGCTTTGA
AGACGTGGGAAACAGTGAAAAAAATCTCCTTTTGGGAGTATAACAATCAC
TAGTTATATAATCAATTATTAGACCACCCCTGTcacacagccccggtgga
acttcttcctTTCTTTAGTGGTGAGATGAAAGTTTCTAAAATCTGATATT
tctgaaaattgataaaattccaatggggatcGGATTTCTATTGTACtggg
tgtttcaaaaaaaaagaagtttaaagGTAGTTTGtgaaaaacctaaaaat
attatGTATCTAAACATTTCACCATCAGAAAGAAGAAAggctaacttaaa
atttgagctatcatactttAAATTTGCTTTACGTATGTTCGAAAAAGtgt
cattttgagaaaaaagtgtgGATCAATTTTGAcgctttttcaaaagtttt
tcaaattttctaatgGTGACAGGacaattacccccccccccgggcaattG
AAGTTTTGTgaatgaaaatcaatttttgtcacGCATGTTTGTTTTACAGT
GGTTGTACGATGTAGACTATTTTCTCCTGTGAATGAATGGTTCGAAT Run BLAST on NCBI protein sequence of TCONS_00002270-protein >TCONS_00002270-protein ID=TCONS_00002270-protein|Name=TCONS_00002270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp
AKQEGFRSRSNHIKQLWKTHHKETAMDAEHKINLQLGLFSFLMILGILGN
VLVIYVYSRAKNRKRFLKFERMILILAVVDLLASTINPAFYIYQIKTNYK
SWHFGYAGCKVIPALGPIFSAISLGLILLMAIDRDRAVCTPFKKQFSLST
LYKAIAVTIFLSIGINVPYMYFLDVHEGGKRCLIGRKGALLYIKSLVSIN
IISDTCFFLIFSVTTVRVCLKLAYKTQLTYPRSREFRARETRRILKMIVS
MGVCFIALIFPRDIFITTTYMSYLHPPPIKVKNYFMVNAILKVIHTSNSV
VNVFLYSVFNRRFRRDALHLFMQFKYIRQLSGYTSEDSSYYSDDGASSRR
FSSRKQSDMNQSKRLQVLRSISVFKTEVSSINSSIQPSLQTSPDMTKRSN
GTHTPQYVANAPGTPYIGVSHLEDGEKEKVVRIATPPTVAEKRPKHETTI
TQTIDHLNIMEDPTPKCSISPRDLNNPIFGDVEIDHIKEDDENDDDRFDE
MIMSASLINEQSPML Run BLAST on NCBI transcript from alignment at sc0000019:704173..706641+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002270 ID=TCONS_00002270|Name=TCONS_00002270|organism=Clytia hemisphaerica|type=transcript|length=2469bp|location=Sequence derived from alignment at sc0000019:704173..706641+ (Clytia hemisphaerica)
TAGCAAAACAGGAAGGATTTCGTTCCAGATCAAACCACATAAAACAATTG
TGGAAAACGCACCATAAGGAAACAGCGATGGATGCTGAACACAAAATTAA
TTTACAACTTGgtttattctcttttttaatgatCTTGGGAATTCTTGGCA
ATGTCCTGGTCATTTATGTGTACTCCAGGGCTAAAAACCGCAAACGTTTT
CTCAAGTTTGAACGGATGATACTGATTTTGGCAGTTGTTGATTTGCTGGC
ATCGACTATCAACCCTGCTTTCTACATctaccaaatcaaaacaaactaca
AAAGTTGGCATTTTGGTTACGCTGGCTGTAAAGTCATCCCCGCCCTTGGA
CCGATCTTCTCCGCTATCTCTCTTGGTTTGATCTTACTTATGGCTATAGA
TCGAGACCGCGCTGTATGCACACCCTTCAAGAAGCAGTTCTCTTTGAGTA
CCCTCTACAAAGCGATCGCTGTGACCATATTCTTATCAATTGGTATAAAC
GTCCCATACATGTATTTTCTAGATGTCCACGAAGGCGGAAAACGTTGCTT
GATCGGGCGGAAGGGTGCTTTACTATACATAAAATCCTTAGTCAGTATCA
ATATCATCAGTGATACCTGCTTCTTTCTAATCTTTTCAGTGACAACCGTA
AGAGTCTGCTTGAAGCTAGCGTACAAGACGCAGTTAACGTATCCCCGTTC
AAGAGAGTTTCGCGCACGTGAAACACGCCGTATCTTGAAAATGATCGTCT
CGATGGGTGTATGTTTCATAGCCCTTATATTCCCACGAGACATTTTCATC
ACAACAACGTACATGTCGTATCTACACCCACCACcaatcaaagtcaaaaa
ttactTCATGGTGAATGCAATCTTAAAAGTCATCCACACGTCAAACAGCG
TCGTTAACGTCTTCCTGTATTCCGTCTTCAACCGTCGTTTCCGGCGTGAC
GCACTCCACCTATTCATGCAGTTCAAATATATCCGACAACTATCGGGATA
CACGTCTGAAGACAGCAGCTACTATTCCGACGACGGTGCCAGTAGTCGAC
GATTTTCATCCCGTAAGCAATCCGACATGAACCAATCAAAACGACTTCAG
GTGTTACGATCCATAAGTGTCTTCAAAACGGAAGTTTCATCAATCAATTC
TTCAATTCAACCCTCATTGCAAACATCTCCGGACATGACCAAAAGATCCA
ACGGAACTCATACACCACAGTATGTAGCAAACGCACCGGGTACTCCCTAC
ATCGGAGTATCACATCTGGAAGACGGGGAAAAAGAAAAGGTGGTGAGTGG
CTTaactttttcgaaaataatatttttgtttagttttttacACAAGTAAT
TTCGATTTCTTAATGTACAAATATATCATTTGTgatattttgctcaattt
tactgaaaaaagaagactttagCACAACTTTTTTAACAAGCTATTTTAAT
ACAGTAGAGTTTCCAAACTCGAacccgcacggggaacacaaaattgttcg
atttaaggaaatttcgagttaggGAGTAAGGTTTACAAAGCATTGTTAAA
TGAAGGGACaaaaaacttgtttgagttaatGAGAccttcgagttatagag
gttctagttaaagagactctaatTTAATATTATGATAAATCTTTTTTGCC
TTCAATACATATAGGTCCGGATAGCAACACCACCGACGGTAGCCGAAAAG
CGTCCAAAACATGAAACAACCATCACTCAAACTATCGATCATCTAAACAT
CATGGAAGACCCAACTCCCAAATGTTCAATATCACCACGTGATCTTAACA
ATCCAATTTTCGGTGACGTAGAAATCGACCATATTAAagaagatgatgaa
aatgatgatgatCGTTTCGACGAAATGATAATGTCAGCATCTTTGATAAA
CGAACAATCACCTATGCTTTGAAGACGTGGGAAACAGTGAAAAAAATCTC
CTTTTGGGAGTATAACAATCACTAGTTATATAATCAATTATTAGACCACC
CCTGTcacacagccccggtggaacttcttcctTTCTTTAGTGGTGAGATG
AAAGTTTCTAAAATCTGATATTtctgaaaattgataaaattccaatgggg
atcGGATTTCTATTGTACtgggtgtttcaaaaaaaaagaagtttaaagGT
AGTTTGtgaaaaacctaaaaatattatGTATCTAAACATTTCACCATCAG
AAAGAAGAAAggctaacttaaaatttgagctatcatactttAAATTTGCT
TTACGTATGTTCGAAAAAGtgtcattttgagaaaaaagtgtgGATCAATT
TTGAcgctttttcaaaagtttttcaaattttctaatgGTGACAGGacaat
tacccccccccccgggcaattGAAGTTTTGTgaatgaaaatcaatttttg
tcacGCATGTTTGTTTTACAGTGGTTGTACGATGTAGACTATTTTCTCCT
GTGAATGAATGGTTCGAAT Coding sequence (CDS) from alignment at sc0000019:704173..706641+ >TCONS_00002270 ID=TCONS_00002270|Name=TCONS_00002270|organism=Clytia hemisphaerica|type=CDS|length=3096bp|location=Sequence derived from alignment at sc0000019:704173..706641+ (Clytia hemisphaerica)
GCAAAACAGGAAGGATTTCGTTCCAGATCAAACCACATAAAACAATTGTG
GAAAACGCACCATAAGGAAACAGCGATGGATGCTGAACACAAAATTAATT
TACAACTTGgtttattctcttttttaatgatCTTGGGAATTCTTGGCAAT
GTCCTGGTCATTTATGTGTACTCCAGGGCTAAAAACCGCAAACGTTTTCT
CAAGTTTGAACGGATGATACTGATTTTGGCAGTTGTTGATTTGCTGGCAT
CGACTATCAACCCTGCTTTCTACATctaccaaatcaaaacaaactacaAA
AGTTGGCATTTTGGTTACGCTGGCTGTAAAGTCATCCCCGCCCTTGGACC
GATCTTCTCCGCTATCTCTCTTGGTTTGATCTTACTTATGGCTATAGATC
GAGACCGCGCTGTATGCACACCCTTCAAGAAGCAGTTCTCTTTGAGTACC
CTCTACAAAGCGATCGCTGTGACCATATTCTTATCAATTGGTATAAACGT
CCCATACATGTATTTTCTAGATGTCCACGAAGGCGGAAAACGTTGCTTGA
TCGGGCGGAAGGGTGCTTTACTATACATAAAATCCTTAGTCAGTATCAAT
ATCATCAGTGATACCTGCTTCTTTCTAATCTTTTCAGTGACAACCGTAAG
AGTCTGCTTGAAGCTAGCGTACAAGACGCAGTTAACGTATCCCCGTTCAA
GAGAGTTTCGCGCACGTGAAACACGCCGTATCTTGAAAATGATCGTCTCG
ATGGGTGTATGTTTCATAGCCCTTATATTCCCACGAGACATTTTCATCAC
AACAACGTACATGTCGTATCTACACCCACCACcaatcaaagtcaaaaatt
actTCATGGTGAATGCAATCTTAAAAGTCATCCACACGTCAAACAGCGTC
GTTAACGTCTTCCTGTATTCCGTCTTCAACCGTCGTTTCCGGCGTGACGC
ACTCCACCTATTCATGCAGTTCAAATATATCCGACAACTATCGGGATACA
CGTCTGAAGACAGCAGCTACTATTCCGACGACGGTGCCAGTAGTCGACGA
TTTTCATCCCGTAAGCAATCCGACATGAACCAATCAAAACGACTTCAGGT
GTTACGATCCATAAGTGTCTTCAAAACGGAAGTTTCATCAATCAATTCTT
CAATTCAACCCTCATTGCAAACATCTCCGGACATGACCAAAAGATCCAAC
GGAACTCATACACCACAGTATGTAGCAAACGCACCGGGTACTCCCTACAT
CGGAGTATCACATCTGGAAGACGGGGAAAAAGAAAAGGTGGTCCGGATAG
CAACACCACCGACGGTAGCCGAAAAGCGTCCAAAACATGAAACAACCATC
ACTCAAACTATCGATCATCTAAACATCATGGAAGACCCAACTCCCAAATG
TTCAATATCACCACGTGATCTTAACAATCCAATTTTCGGTGACGTAGAAA
TCGACCATATTAAagaagatgatgaaaatgatgatgatCGTTTCGACGAA
ATGATAATGTCAGCATCTTTGATAAACGAACAATCACCTATGCTTTGAGC
AAAACAGGAAGGATTTCGTTCCAGATCAAACCACATAAAACAATTGTGGA
AAACGCACCATAAGGAAACAGCGATGGATGCTGAACACAAAATTAATTTA
CAACTTGgtttattctcttttttaatgatCTTGGGAATTCTTGGCAATGT
CCTGGTCATTTATGTGTACTCCAGGGCTAAAAACCGCAAACGTTTTCTCA
AGTTTGAACGGATGATACTGATTTTGGCAGTTGTTGATTTGCTGGCATCG
ACTATCAACCCTGCTTTCTACATctaccaaatcaaaacaaactacaAAAG
TTGGCATTTTGGTTACGCTGGCTGTAAAGTCATCCCCGCCCTTGGACCGA
TCTTCTCCGCTATCTCTCTTGGTTTGATCTTACTTATGGCTATAGATCGA
GACCGCGCTGTATGCACACCCTTCAAGAAGCAGTTCTCTTTGAGTACCCT
CTACAAAGCGATCGCTGTGACCATATTCTTATCAATTGGTATAAACGTCC
CATACATGTATTTTCTAGATGTCCACGAAGGCGGAAAACGTTGCTTGATC
GGGCGGAAGGGTGCTTTACTATACATAAAATCCTTAGTCAGTATCAATAT
CATCAGTGATACCTGCTTCTTTCTAATCTTTTCAGTGACAACCGTAAGAG
TCTGCTTGAAGCTAGCGTACAAGACGCAGTTAACGTATCCCCGTTCAAGA
GAGTTTCGCGCACGTGAAACACGCCGTATCTTGAAAATGATCGTCTCGAT
GGGTGTATGTTTCATAGCCCTTATATTCCCACGAGACATTTTCATCACAA
CAACGTACATGTCGTATCTACACCCACCACcaatcaaagtcaaaaattac
tTCATGGTGAATGCAATCTTAAAAGTCATCCACACGTCAAACAGCGTCGT
TAACGTCTTCCTGTATTCCGTCTTCAACCGTCGTTTCCGGCGTGACGCAC
TCCACCTATTCATGCAGTTCAAATATATCCGACAACTATCGGGATACACG
TCTGAAGACAGCAGCTACTATTCCGACGACGGTGCCAGTAGTCGACGATT
TTCATCCCGTAAGCAATCCGACATGAACCAATCAAAACGACTTCAGGTGT
TACGATCCATAAGTGTCTTCAAAACGGAAGTTTCATCAATCAATTCTTCA
ATTCAACCCTCATTGCAAACATCTCCGGACATGACCAAAAGATCCAACGG
AACTCATACACCACAGTATGTAGCAAACGCACCGGGTACTCCCTACATCG
GAGTATCACATCTGGAAGACGGGGAAAAAGAAAAGGTGGTCCGGATAGCA
ACACCACCGACGGTAGCCGAAAAGCGTCCAAAACATGAAACAACCATCAC
TCAAACTATCGATCATCTAAACATCATGGAAGACCCAACTCCCAAATGTT
CAATATCACCACGTGATCTTAACAATCCAATTTTCGGTGACGTAGAAATC
GACCATATTAAagaagatgatgaaaatgatgatgatCGTTTCGACGAAAT
GATAATGTCAGCATCTTTGATAAACGAACAATCACCTATGCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002270-exon-sc0000019-1491911889:704173..705464 | TCONS_00002270-exon-sc0000019-1491911889:704173..705464 | Clytia hemisphaerica | exon |
| TCONS_00002270-exon-sc0000019-1510915933:704173..705464 | TCONS_00002270-exon-sc0000019-1510915933:704173..705464 | Clytia hemisphaerica | exon |
| TCONS_00002270-exon-sc0000019-1575043694:704173..705464 | TCONS_00002270-exon-sc0000019-1575043694:704173..705464 | Clytia hemisphaerica | exon |
| TCONS_00002270-exon-sc0000019-1491911889:705837..706641 | TCONS_00002270-exon-sc0000019-1491911889:705837..706641 | Clytia hemisphaerica | exon |
| TCONS_00002270-exon-sc0000019-1510915933:705837..706641 | TCONS_00002270-exon-sc0000019-1510915933:705837..706641 | Clytia hemisphaerica | exon |
| TCONS_00002270-exon-sc0000019-1575043694:705837..706641 | TCONS_00002270-exon-sc0000019-1575043694:705837..706641 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:704173..706641 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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