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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002273 ID=TCONS_00002273|Name=TCONS_00002273|organism=Clytia hemisphaerica|type=transcript|length=1346bp
GGagaatattttcattaaaaagaacaTCGATTGTCAAGCTAGTGATAtta
gacaaaaatatttaagatGTCAACAATACTTGAAGGATTTtgcatttcaa
tttttttggttttcacCTGTGTTAAAGGCACATTatcaatcgaatgtttt
gattgttcAGGAAAAATCGAATATTGCAACAAGACGGAAACAACGAAGAC
GTGCCATGGCTCTCAATTCTCCTGTCTTTTACGTTTTAGCAGCACTAAAG
TTTGGGTAATCGAGAATGGGAGACTTGTGTCCGAAATACAGGAACGTGTA
TCAAAAACATGCGCAGTTGAATCTAGATTATATTGCGAGGACCAGAAGAA
AATCGATCCCAATATGGATTATTGTAAGGCTCACTGGTGTTATAAAGATC
GATGTAACTTTGAATTGAAACAAGCAGGCAGTGACACTTTGACAAATAAC
AAAATTGACCCGTATGGCTGGTATCGCACTACCTCTTCTGCAAGAAAAAA
TCATTCAGAAACAAAAGCTTTGACAGTATGGCTTGTATGTATATGTAATG
CAATCTTTATTAGAAACATCGGAGACACAGTGAGATAAAAGCTTAAAATG
CAGTATCAACTAAAGACATTGCCTCTCTTTATCAGTTTTGGATGGATCAA
TTACATATGGAAATTGGGGAAATCGCTTCCAAAAATCATCAACACCTGAT
AGAGCAAAACACTTTTCAAGCCACACTAAATCAAGATTTCGTTTCATATA
TCCGTCATATGACATGTCACGAATGTTGAGGAGAGACATCATATCTGACA
ATACTTATTTGAATATACACCTTTCTCACTCATCGACTACACAAGCTACA
AAAGCATATTACAATGATCTGGAATCAATGTGATAGTATGTCTACTGCAG
TAATATGGGTGTTGTTTGATAATACGATCAGTGTCATGGAAAAATACCAG
ATTGTACAAACAACTATTTGTCCCTACTGTTTAACTATTCTGTGTTCGAA
TTAGTTAGCATTCTTGTTGCTTTATAACAACATTGAAATTCATCCCGATA
CAGTCTTTAAGAAACACTCAAAtagtttgagatattttgcttGTTGATTC
CTTCCATAGTCTTGAGCAAAACTTCTAAGTCATTAATTCACACCTTTTCC
AGAGTCGAAAAATGACgatttgaaatctctaaaacTGGACTTTCTTACGT
CAAAATCATATTCCTTTCTtgctaaaagtaaaaaactagGCCCTTAGTTC
TCGTTTTTctattctgatagcgctcacgatTACATCACGTACTTCAGTAG
AATAAAGAAGTGGTATAACAGAATCTCGGTACAAGATTGATCCAGG Run BLAST on NCBI protein sequence of TCONS_00002273-protein >TCONS_00002273-protein ID=TCONS_00002273-protein|Name=TCONS_00002273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MSTILEGFCISIFLVFTCVKGTLSIECFDCSGKIEYCNKTETTKTCHGSQ
FSCLLRFSSTKVWVIENGRLVSEIQERVSKTCAVESRLYCEDQKKIDPNM
DYCKAHWCYKDRCNFELKQAGSDTLTNNKIDPYGWYRTTSSARKNHSETK
ALTVWLVCICNAIFIRNIGDTVR Run BLAST on NCBI transcript from alignment at sc0000019:724696..726781+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002273 ID=TCONS_00002273|Name=TCONS_00002273|organism=Clytia hemisphaerica|type=transcript|length=2086bp|location=Sequence derived from alignment at sc0000019:724696..726781+ (Clytia hemisphaerica)
GGagaatattttcattaaaaagaacaTCGATTGTCAAGCTAGTGATAtta
gacaaaaatatttaagatGTCAACAATACTTGAAGGATTTtgcatttcaa
tttttttggttttcacCTGTGTTAAAGGTATATCTATTACTTTGAACTAT
ATAtcatttcaaaagttatagaccaaatttagttttttaagTTACAAATT
TGTAAGAACAAGAAATTGACGATATTTCAAAGTTGAATTGAGAAAATATA
ATTGATGTAtcgatcctccgtccgataTATATTGATATCACCGGATAGAG
CAAGAAATTCTGAGCAGAACAATATACTACAACAAGTCCTGTTCttaaac
acacaaagaaatatgACATCCCGGTTAGGTACATTACGATCGTTTTACAT
CAGTTTATTCTACACTGTACTTAACCTGACGGAACTACAAATTCTCTTAG
CTGAGTGTTTGTGTTTGTGTTTGAGAACATGATCTTGAAGGATTGGCCCT
CTACTATAAGAAGAAACTGCTTAGCCAAAAAAATAGCAAGATACTCTTTG
TGTACATATCGACTTTTATCAATACATTTCtcatcaatattttaattcAG
GCACATTatcaatcgaatgttttgattgttcAGGAAAAATCGAATATTGC
AACAAGACGGAAACAACGAAGACGTGCCATGGCTCTCAATTCTCCTGTCT
TTTACGTTTTAGCAGCACTAAAGTTTGGGTAATCGAGAATGGGAGACTTG
TGTCCGAAATACAGGAACGTGTATCAAAAACATGCGCAGTTGAATCTAGA
TTATATTGCGAGGACCAGAAGAAAATCGATCCCAATATGGATTATTGTAA
GGTAAGGATTATTCGTCTCAAGTATGTAATACCAATTGTACTAGAAACAT
AAATTACCTCTTACTTTTGTATGCTTTAACTCTTTCAGTAGCCCAGATAA
ATTTCCTAAATTTATAagcgattttttttttaatttgttgaaaagataaa
tcatgaaaaaaaaagtcCTCCAAGTACTGAAGGAGTTAACCAGTCAAAAC
TGATTATTTGTCTCTTTATTGCTTAGGAGCTTGTAgatttatctgtttaa
aaagtttCTCTTTCTTAGGCTCACTGGTGTTATAAAGATCGATGTAACTT
TGAATTGAAACAAGCAGGCAGTGACACTTTGACAAATAACAAAATTGACC
CGTATGGCTGGTATCGCACTACCTCTTCTGCAAGAAAAAATCATTCAGAA
ACAAAAGCTTTGACAGTATGGCTTGTATGTATATGTAATGCAATCTTTAT
TAGAAACATCGGAGACACAGTGAGATAAAAGCTTAAAATGCAGTATCAAC
TAAAGACATTGCCTCTCTTTATCAGTTTTGGATGGATCAATTACATATGG
AAATTGGGGAAATCGCTTCCAAAAATCATCAACACCTGATAGAGCAAAAC
ACTTTTCAAGCCACACTAAATCAAGATTTCGTTTCATATATCCGTCATAT
GACATGTCACGAATGTTGAGGAGAGACATCATATCTGACAATACTTATTT
GAATATACACCTTTCTCACTCATCGACTACACAAGCTACAAAAGCATATT
ACAATGATCTGGAATCAATGTGATAGTATGTCTACTGCAGTAATATGGGT
GTTGTTTGATAATACGATCAGTGTCATGGAAAAATACCAGATTGTACAAA
CAACTATTTGTCCCTACTGTTTAACTATTCTGTGTTCGAATTAGTTAGCA
TTCTTGTTGCTTTATAACAACATTGAAATTCATCCCGATACAGTCTTTAA
GAAACACTCAAAtagtttgagatattttgcttGTTGATTCCTTCCATAGT
CTTGAGCAAAACTTCTAAGTCATTAATTCACACCTTTTCCAGAGTCGAAA
AATGACgatttgaaatctctaaaacTGGACTTTCTTACGTCAAAATCATA
TTCCTTTCTtgctaaaagtaaaaaactagGCCCTTAGTTCTCGTTTTTct
attctgatagcgctcacgatTACATCACGTACTTCAGTAGAATAAAGAAG
TGGTATAACAGAATCTCGGTACAAGATTGATCCAGG Coding sequence (CDS) from alignment at sc0000019:724696..726781+ >TCONS_00002273 ID=TCONS_00002273|Name=TCONS_00002273|organism=Clytia hemisphaerica|type=CDS|length=1566bp|location=Sequence derived from alignment at sc0000019:724696..726781+ (Clytia hemisphaerica)
atGTCAACAATACTTGAAGGATTTtgcatttcaatttttttggttttcac
CTGTGTTAAAGGCACATTatcaatcgaatgttttgattgttcAGGAAAAA
TCGAATATTGCAACAAGACGGAAACAACGAAGACGTGCCATGGCTCTCAA
TTCTCCTGTCTTTTACGTTTTAGCAGCACTAAAGTTTGGGTAATCGAGAA
TGGGAGACTTGTGTCCGAAATACAGGAACGTGTATCAAAAACATGCGCAG
TTGAATCTAGATTATATTGCGAGGACCAGAAGAAAATCGATCCCAATATG
GATTATTGTAAGGCTCACTGGTGTTATAAAGATCGATGTAACTTTGAATT
GAAACAAGCAGGCAGTGACACTTTGACAAATAACAAAATTGACCCGTATG
GCTGGTATCGCACTACCTCTTCTGCAAGAAAAAATCATTCAGAAACAAAA
GCTTTGACAGTATGGCTTGTATGTATATGTAATGCAATCTTTATTAGAAA
CATCGGAGACACAGTGAGATAAatGTCAACAATACTTGAAGGATTTtgca
tttcaatttttttggttttcacCTGTGTTAAAGGCACATTatcaatcgaa
tgttttgattgttcAGGAAAAATCGAATATTGCAACAAGACGGAAACAAC
GAAGACGTGCCATGGCTCTCAATTCTCCTGTCTTTTACGTTTTAGCAGCA
CTAAAGTTTGGGTAATCGAGAATGGGAGACTTGTGTCCGAAATACAGGAA
CGTGTATCAAAAACATGCGCAGTTGAATCTAGATTATATTGCGAGGACCA
GAAGAAAATCGATCCCAATATGGATTATTGTAAGGCTCACTGGTGTTATA
AAGATCGATGTAACTTTGAATTGAAACAAGCAGGCAGTGACACTTTGACA
AATAACAAAATTGACCCGTATGGCTGGTATCGCACTACCTCTTCTGCAAG
AAAAAATCATTCAGAAACAAAAGCTTTGACAGTATGGCTTGTATGTATAT
GTAATGCAATCTTTATTAGAAACATCGGAGACACAGTGAGATAAatGTCA
ACAATACTTGAAGGATTTtgcatttcaatttttttggttttcacCTGTGT
TAAAGGCACATTatcaatcgaatgttttgattgttcAGGAAAAATCGAAT
ATTGCAACAAGACGGAAACAACGAAGACGTGCCATGGCTCTCAATTCTCC
TGTCTTTTACGTTTTAGCAGCACTAAAGTTTGGGTAATCGAGAATGGGAG
ACTTGTGTCCGAAATACAGGAACGTGTATCAAAAACATGCGCAGTTGAAT
CTAGATTATATTGCGAGGACCAGAAGAAAATCGATCCCAATATGGATTAT
TGTAAGGCTCACTGGTGTTATAAAGATCGATGTAACTTTGAATTGAAACA
AGCAGGCAGTGACACTTTGACAAATAACAAAATTGACCCGTATGGCTGGT
ATCGCACTACCTCTTCTGCAAGAAAAAATCATTCAGAAACAAAAGCTTTG
ACAGTATGGCTTGTATGTATATGTAATGCAATCTTTATTAGAAACATCGG
AGACACAGTGAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002273-exon-sc0000019-1491911889:724696..724822 | TCONS_00002273-exon-sc0000019-1491911889:724696..724822 | Clytia hemisphaerica | exon |
| TCONS_00002273-exon-sc0000019-1510915933:724696..724822 | TCONS_00002273-exon-sc0000019-1510915933:724696..724822 | Clytia hemisphaerica | exon |
| TCONS_00002273-exon-sc0000019-1575043694:724696..724822 | TCONS_00002273-exon-sc0000019-1575043694:724696..724822 | Clytia hemisphaerica | exon |
| TCONS_00002273-exon-sc0000019-1491911889:725296..725546 | TCONS_00002273-exon-sc0000019-1491911889:725296..725546 | Clytia hemisphaerica | exon |
| TCONS_00002273-exon-sc0000019-1510915933:725296..725546 | TCONS_00002273-exon-sc0000019-1510915933:725296..725546 | Clytia hemisphaerica | exon |
| TCONS_00002273-exon-sc0000019-1575043694:725296..725546 | TCONS_00002273-exon-sc0000019-1575043694:725296..725546 | Clytia hemisphaerica | exon |
| TCONS_00002273-exon-sc0000019-1491911889:725814..726781 | TCONS_00002273-exon-sc0000019-1491911889:725814..726781 | Clytia hemisphaerica | exon |
| TCONS_00002273-exon-sc0000019-1510915933:725814..726781 | TCONS_00002273-exon-sc0000019-1510915933:725814..726781 | Clytia hemisphaerica | exon |
| TCONS_00002273-exon-sc0000019-1575043694:725814..726781 | TCONS_00002273-exon-sc0000019-1575043694:725814..726781 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:724696..726781 + |
Blast
The following BLAST results are available for this feature:
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