|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002275 ID=TCONS_00002275|Name=TCONS_00002275|organism=Clytia hemisphaerica|type=transcript|length=1761bp
CCAGGCCAAACGAAATATTTGATACCATGAAGATGAATATGTTTCAAACA
AAGATGAACGCAAAACGACTCCTTTGTTACGCAATCTCGGTCGTTCTCAA
GTTCACCAATGCTGTTGTGGACATAGAAATTGGTCATGGAGAAGATATAC
AGATGACGTGGAACATACCACCAACCGCAAACAACCTCTTCATTTATCTC
GGAAGCCAACGAGATGCACCCGTACTAGCACACATATCAAAAGGTGAAAT
AGCATATTCAAAGAAGCTAACAGAAGCAAGGTTCGGCACCCGGCTGTTTA
TACAAATGGTGGACAGCGATTTGAAATTAACGATCGTAGATGCACAAGAC
AGTGACGAAGAAACATATACAGCGACAGCACAATTCGGAATCGGCGAAGT
CAAGATATTGCAAAGTTTTCGAGTTGAAGTCACAGCTCAATCATCACACG
ATAAATCTATTTCTTTGGGTTCAGGACTTTCATCTACCGACACCGGCATT
ATAGTCGGCATCGTCGTCGCAATCGTCGTTCTTATTGTCGTCCTTATCCT
GATACGTTATTGTTACGATCGTAATTATAATCCTGCCGACCATTTAACCG
ATCCTGAGAAAGACAGCGAAACGCatatttgatgattttgattggttgat
cgCTTTGTAAATTATCATTTCAAAGTGATTTGTTGGTAGTACCAAAGCTG
GTAAGCTTGCTGTCGACATTTCGATTGAATTCCTACGATCAGCATCGACA
ACTAAATTTCAACTTTGATGCGACAAGGGGCTGGATCTTATTATTAGAGT
TGCCGAGTGATGACAGATCGCTTTATCTGTGACAAATGCGTCTTGGGCAT
TTAGCGTTATTTTTCCAGTTGACCGATAATGTGTACCAATGCGTCGTAAC
AAAAAATCTTAcagaattttgtgttttttaatcAGAATTCctaaagtttt
gataaaataactCGGATTCTACCAGGAAAACTAATTTAGAAAGTTTAGCA
AGCGTAGACAAGCGAAAGATGGGAATTTTAATCCTGGGCATTTTAATTAA
TGAAATTGAAACTGAATTTTGTGTTCTTTTGGTGGAAAATCTTTATCGCG
gatgtatttttaatttttagtgttAGTAGTAATTTGAATACAATTATCTA
ATTCATATTTTAGTCTAttaatcaataaaatcaaatttattttctaaaaa
atacttatttgtttTTGAGCATGAAAATGTATAAATGTATTGGGAGATTC
AACACTCTAAAGACGTTTAGTCAGCTCAGGCAGAGGCTTTCGCttccaaa
agtaaaaaaaatctacaattaTTTCTCGACAAAATTAGTTTAATTAAATT
TCATACTACTTTTTAAGAATTTAGGATTTTTAGCAACTTACTTGAAAAGA
ACGACGTGAacgaaaacaagaaaacaagaaaacaaaaaaagattaaaaat
tgactaaaatttaCGTGGTAAACTCATTTTTTCCAATGATTAATAATGCA
TAAGATGAATATAAAAGCCATGAATTCTGGTCATCCACTGATAACGTAAG
CCAATCATTTTTGACTCAAGCTGAAGGAGAAAAAATTGACTGTTTTAATT
TTATTGTAAGACTCTAATCCCTTATATGGAGATGATAAATCCATTGTAAT
TGCGAAGGGCTAGAGATGAATCTCTTGGAAGGGGATGGGAAATAAAGCCG
CCTATTTCCCATCCGAAGTGGATTTTACACAAACGACGGATAGAAAgcga
ggattccaaaa Run BLAST on NCBI transcript from alignment at sc0000019:751986..758212+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002275 ID=TCONS_00002275|Name=TCONS_00002275|organism=Clytia hemisphaerica|type=transcript|length=6227bp|location=Sequence derived from alignment at sc0000019:751986..758212+ (Clytia hemisphaerica)
CCAGGCCAAACGAAATATTTGATACCATGAAGATGAATATGTTTCAAACA
AAGATGAACGCAAAACGACTCCTTTGTTACGCAATCTCGGTCGTTCTCAG
TAAGTAGTCAAAGCAACCCTCTTGGAATTTTagtgagaattaattttggc
gagtgtCGTGTCCtttaaataaagatttttttttgaaagaaaatattttt
gtgtatttttgaaggaaattcaTTCAATGTATTTTAGAAGGAAAATCATT
TTGTGTATTTATGAAGGAAATTAATTTAAAGTATTTTAGAaggaaaatca
tttaatgtatttttgaaggaaaattcttctgattgtttttgaaagaaatt
tcttaaAACGAATAAAGTCAGTTTGTGTATTTCAAGAAGGAAGGAGAATA
TAGTCACATAAAATTGCGGGAATACCCTTTTCAAAACCACTGATCACAaa
cctaaagtctattcacgataagtgtgcactcttttttcctctacctataa
cttttgaaggaattcttcaatctttataaatttggtatcatcggaaagat
attagtgagtggaacaatttgaaataaaaaaaatctttaaaaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtga
cgttcgatgattaaggattcacttcagtgaaaatgatagttatagcactt
ttctacaagatcttcattgttttcttcttcattttcatcttcaattttat
aatcttcttaaatttttttctatttcaaatcgttccactcactaatatct
ttccaatgataccaaatttataaagattgaagaattccttcaaaagttat
aggtaaatgaaaaaagagtgcacacttatcgtgaatagactttagtaacC
TACTATCAATTAAGCTGGAGATATGGAaatggaaaactttttttggaaat
tctgtatatctttaatttcattttttgcgcTACTTTATAAAGACACTTCA
GCCTGTCCAGACACGATACAGCTGGCTAGATAGctggtttacaaaaattc
atttATGCCATTTTTCATTCGCAGAGTTCATCAATACTGTCCAGACATCA
GATACAACTGACTAGATAAACTGTCTTACAAAAGTTCATTTATTAAATAA
TTGTCAACTTTGTTCATTCACCAGAGTTCACCAATGCTGTTGTGGACATA
GAAATTGGTCATGGAGAAGATATACAGATGACGTGGAACATACCACCAAC
CGCAAACAACCTCTTCATTTATCTCGGAAGCCAACGAGATGCACCCGTAC
TAGCACACATATCAAAAGGTGATATTTAAGTTGGTTTTAATCTTGTTCCC
GGTTCAGAATGGGCTCTTGCAGAAAATGCCCTTACATGGGGGTGGATGAT
ATAGTGTCCAGGGGGTAGTGAAAGCTCTACAAAATCTACCTTGTCCaagg
gtaaacttgctctgtttgagtgtaattttgctctgtttgagggtaatttt
aaTTATCCAtggggtcaactaatgcttgtccggggggccaaaagtcacaa
tgtccggggggccaaaagtcacaatgtccggggggggggggaaatttcCA
AATGTtaaatcctccacccccctaagtgctaagttttaatgggtaattaa
tctttttctttcgaagtcttttcaaactgtctgcaaagaattgaactgtt
tgaatcttttcggaaaaaatttctaaattaatacatcaaaagttatggat
gtttttttatgagaaattgggatgaaaaattggtcaaaaagcactatttt
caaaattgtgagacaaataagcttttagaaaaattttccgaaaatccgtt
tttagttcggtaaaagatacaccatctaccgcgaaaaacttttcaaaata
ttttttcttcgccgaaaataagctcttctaggttgaaatactcttcttct
caaaaatctttattttcttcttcatcaaattttttcattgcgattcttaa
attttcagactcaaggataattggcctaGCAGAAAACGTATATCATAAGA
TTGGTGCCaacaattttgttattttattttgacaatATAATATTTCGGAT
TATTATCCATCATCAGGtctaaaagtaaaataaatagatataaaaacagt
taaaatcaATCGTCAACATTTATACATACCCTCTAAAAATTACATCCATA
CATCTATCCTACATCTACAACtcaaacaaaaagtaaaattgaatcatttt
tcaaaacaaattgagAAACGATTCCCAGGCAACTTCTCACCTGGGAATAG
TGAAAATAGAAAGTGTATAatatgccacagttttgtgtgctacatcaagt
agaaattcatattttgtatgtggcaaatattaaaaattcactatggtcag
agcccttaaactaGCAAGAATAAGGCccaaaatggttttcttatCATTAA
CACTGGAATGAAGTAAGTAAGACCAGGTTCTGTTgggaaaacaagaaaaa
acaagaattttttttgagccaaaaggtcatctacgtgaagcaacaatcAT
TTCATGCAACACAAAAGGCACTGGATGGGTACAGTGAGAAATTCTTAAGC
CGAAATTTTCAAATCCAAACATTTTGATGCGTCATAGAAGAAACCTTGGT
ACCTGTTGGTACAGCAAAAATCAACCAAGAATTTATCCATCTTAGATAGT
GATCTAACTGACTTAGACATTATAGTAAAGGGTAAACTAGTCTAAAGTCA
TAATAGTCTAAACAGACTTATAAATACAAACTTCTTTCTGCCGTACAAAG
TACTCCGTAAAGTCTTTACCCCAATTTCCGTAGATCAAGCTCTCTAAAAT
ATTGTCCAATTCATTCCACGATGTCTCTgccaagttttttaaaaatgtca
aacacATTGGATGAGGCTAGGAGTACTGACTTGTATGGTCGGCGGGACGT
GCAGCTGAAGTTTATAAAATAGACATTGTcaaatatgaatgtttggtaga
TTTCGGATCCAGTCAGAACGAATATTTTTCTCGTTTTCATCCTGAAAAGT
CGCAACAATGTTGCAAAAGGCGAACAATTGTAAAAAATTGCTTTCTACCC
TGAAAACAGTCCAAAATAACCAAAGGTCGACGCTGTCAGATACACAACTT
AAAAGTTgataaatttgggaccctgtcagatatcttcacaGCAAATAGCA
AAAAAGAGACCCTGACATTAAGCGACACGTTCCCCTTCCAACCCAGAGGT
TTAGCCTTATTCAGAGGTTACAAGCTGGCTGAATAGTTCAAATGTTTTAA
AGAACTtgttaattattttcaaaatacagGTGAAATAGCATATTCAAAGA
AGCTAACAGAAGCAAGGTTCGGCACCCGGCTGTTTATACAAATGGTGGAC
AGCGATTTGAAATTAACGATCGTAGATGCACAAGACAGTGACGAAGAAAC
ATATACAGCGACAGCACAATTCGGAATCGGCGAAGTCAAGATATTGCAAA
GTTTTCGAGTTGAAGTCACAGGTGAGCTACCTTAAGtatattaattttgg
cgggattaaatttggcggattttagtaaaaaatatcTTCTGggttgtttt
attacaggttacaTTAAAAATATTCCagtacattttttttcttttattag
gcgagaccaatttaatttgttgttctacgggcccgaccgaccctattttt
gctaaaatgaaaaaaataataatatcgaatttctactacaatatatttta
cacactagttatttgtaagaattaagcttgaataaagctgaaaattaatt
caagaaattgaaaatcataaaaagcattccatacactaaaattttattat
ggtCTTCATCGAAGAGATCCAGATactttttagaagattttgtcgttacc
ttaccaaccctgataaatgaaaaatttatttttattttgccgaccgaccg
acccatatttttctaacgatctgtccgtagaacaacaaattaaattggtc
tcgccttagaaTAACATttatatgcaggctcagtttttgtggtacctaaa
caatggctctattacTAAAGAACAATAGAGTGCTAAGCAttatgcgagcc
tgatatagggacagtcagttgcttataaaaaaacatgtaaatctcaaaac
gtctaaaaatatctaaaaacgcCTTTTTTAAAACGTAATACGGGTGCAAG
AACATTTTTACCCTAAGGTATCTTTTCCTGTCTTCGCATCTTTATTTCCA
GCTCAATCATCACACGATAAATCTATTTCTTTGGGTTCAGGACTTTCATC
TACCGACACCGGCATTATAGTCGGCATCGTCGTCGCAATCGTCGTTCTTA
TTGTCGTCCTTATCCTGATACGTTATTGTTACGATCGTAATTATAATCCT
GCCGACCATTTAACCGATCCTGAGAAAGACAGCGAAACGCatatttgatg
attttgattggttgatcgCTTTGTAAATTATCATTTCAAAGTGATTTGTT
GGTAGTACCAAAGCTGGTAAGCTTGCTGTCGACATTTCGATTGAATTCCT
ACGATCAGCATCGACAACTAAATTTCAACTTTGATGCGACAAGGGGCTGG
ATCTTATTATTAGAGTTGCCGAGTGATGACAGATCGCTTTATCTGTGACA
AATGCGTCTTGGGCATTTAGCGTTATTTTTCCAGTTGACCGATAATGTGT
ACCAATGCGTCGTAACAAAAAATCTTAcagaattttgtgttttttaatcA
GAATTCctaaagttttgataaaataactCGGATTCTACCAGGAAAACTAA
TTTAGAAAGTTTAGCAAGCGTAGACAAGCGAAAGATGGGAATTTTAATCC
TGGGCATTTTAATTAATGAAATTGAAACTGAATTTTGTGTTCTTTTGGTG
GAAAATCTTTATCGCGgatgtatttttaatttttagtgttAGTAGTAATT
TGAATACAATTATCTAATTCATATTTTAGTCTAttaatcaataaaatcaa
atttattttctaaaaaatacttatttgtttTTGAGCATGAAAATGTATAA
ATGTATTGGGAGATTCAACACTCTAAAGACGTTTAGTCAGCTCAGGCAGA
GGCTTTCGCttccaaaagtaaaaaaaatctacaattaTTTCTCGACAAAA
TTAGTTTAATTAAATTTCATACTACTTTTTAAGAATTTAGGATTTTTAGC
AACTTACTTGAAAAGAACGACGTGAacgaaaacaagaaaacaagaaaaca
aaaaaagattaaaaattgactaaaatttaCGTGGTAAACTCATTTTTTCC
AATGATTAATAATGCATAAGATGAATATAAAAGCCATGAATTCTGGTCAT
CCACTGATAACGTAAGCCAATCATTTTTGACTCAAGCTGAAGGAGAAAAA
ATTGACTGTTTTAATTTTATTGTAAGACTCTAATCCCTTATATGGAGATG
ATAAATCCATTGTAATTGCGAAGGGCTAGAGATGAATCTCTTGGAAGGGG
ATGGGAAATAAAGCCGCCTATTTCCCATCCGAAGTGGATTTTACACAAAC
GACGGATAGAAAgcgaggattccaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002275-exon-sc0000019-1491911889:751986..752084 | TCONS_00002275-exon-sc0000019-1491911889:751986..752084 | Clytia hemisphaerica | exon |
| TCONS_00002275-exon-sc0000019-1510915933:751986..752084 | TCONS_00002275-exon-sc0000019-1510915933:751986..752084 | Clytia hemisphaerica | exon |
| TCONS_00002275-exon-sc0000019-1575043694:751986..752084 | TCONS_00002275-exon-sc0000019-1575043694:751986..752084 | Clytia hemisphaerica | exon |
| TCONS_00002275-exon-sc0000019-1491911889:753810..753953 | TCONS_00002275-exon-sc0000019-1491911889:753810..753953 | Clytia hemisphaerica | exon |
| TCONS_00002275-exon-sc0000019-1510915933:753810..753953 | TCONS_00002275-exon-sc0000019-1510915933:753810..753953 | Clytia hemisphaerica | exon |
| TCONS_00002275-exon-sc0000019-1575043694:753810..753953 | TCONS_00002275-exon-sc0000019-1575043694:753810..753953 | Clytia hemisphaerica | exon |
| TCONS_00002275-exon-sc0000019-1491911889:755965..756156 | TCONS_00002275-exon-sc0000019-1491911889:755965..756156 | Clytia hemisphaerica | exon |
| TCONS_00002275-exon-sc0000019-1510915933:755965..756156 | TCONS_00002275-exon-sc0000019-1510915933:755965..756156 | Clytia hemisphaerica | exon |
| TCONS_00002275-exon-sc0000019-1575043694:755965..756156 | TCONS_00002275-exon-sc0000019-1575043694:755965..756156 | Clytia hemisphaerica | exon |
| TCONS_00002275-exon-sc0000019-1491911889:756887..758212 | TCONS_00002275-exon-sc0000019-1491911889:756887..758212 | Clytia hemisphaerica | exon |
| TCONS_00002275-exon-sc0000019-1510915933:756887..758212 | TCONS_00002275-exon-sc0000019-1510915933:756887..758212 | Clytia hemisphaerica | exon |
| TCONS_00002275-exon-sc0000019-1575043694:756887..758212 | TCONS_00002275-exon-sc0000019-1575043694:756887..758212 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:751986..758212 + |
Blast
The following BLAST results are available for this feature:
|
