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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002327 ID=TCONS_00002327|Name=TCONS_00002327|organism=Clytia hemisphaerica|type=transcript|length=3136bpRun BLAST on NCBI protein sequence of TCONS_00002327-protein >TCONS_00002327-protein ID=TCONS_00002327-protein|Name=TCONS_00002327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp MASALKLALIQSRVFQTKSQTLSRVKELIETAVKQKSNLVCLPEIFNGSYRun BLAST on NCBI transcript from alignment at sc0000019:756533..817862- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002327 ID=TCONS_00002327|Name=TCONS_00002327|organism=Clytia hemisphaerica|type=transcript|length=61330bp|location=Sequence derived from alignment at sc0000019:756533..817862- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000019:756533..817862- >TCONS_00002327 ID=TCONS_00002327|Name=TCONS_00002327|organism=Clytia hemisphaerica|type=CDS|length=8280bp|location=Sequence derived from alignment at sc0000019:756533..817862- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002327 vs. Swiss-Prot (Human)
Match: NIT2 (Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1) HSP 1 Score: 330.487 bits (846), Expect = 4.087e-104 Identity = 150/268 (55.97%), Postives = 200/268 (74.63%), Query Frame = 1
Query: 796 SALKLALIQSRVFQTKSQTLSRVKELIETAVKQKSNLVCLPEIFNGSYGLGFFIPNSEEVPGETSNFLSGLAKEHSIHLVGGSISEKDGDKYYNTCLVYGPDGSLVAKHRKVHLFDIDVPGGIKFTESEILSPGSSTNTFNIGPWKIGLGICYDIRFPELSAVYAKQGCNLLLFPSAFNMTTGPKHWELLTRARANDFQLYTAMCSPARDENASYVAWGHSTVCNPWAEVIAKAGIDEEIIYADLDLQLVETVRQSIPTRQQKRHDVY 1599
++ +LALIQ ++ KS ++R I A Q + +V LPE FN YG +F +E++PGE++ LS +AKE SI+L+GGSI E+D K YNTC V+GPDG+L+AK+RK+HLFDIDVPG I F ES+ LSPG S +TF+ ++GLGICYD+RF EL+ +YA++GC LL++P AFN+TTGP HWELL R+RA D Q+Y A SPARD+ ASYVAWGHSTV NPW EV+AKAG +E I+Y+D+DL+ + +RQ IP +QKR D+Y
Sbjct: 2 TSFRLALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAKYFPEYAEKIPGESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRSRAVDNQVYVATASPARDDKASYVAWGHSTVVNPWGEVLAKAGTEEAIVYSDIDLKKLAEIRQQIPVFRQKRSDLY 269 The following BLAST results are available for this feature:
BLAST of TCONS_00002327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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