TCONS_00002346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002346
Unique NameTCONS_00002346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002346 ID=TCONS_00002346|Name=TCONS_00002346|organism=Clytia hemisphaerica|type=transcript|length=1371bp
TTGTCAATGCATCATGTCTCATTTTCATCGTCGTCCTCACAAGTAACATT
ATATTATATTAAGTGGTTGTGGAGTGAGACTTTGGTATGGACCACCAGTG
AAATTAACAGCTGTACCATGAAGTTTATGTCCATTACCACCATAATTGAT
TAAATTAAGATAGGGTTGGTGCGCAGAAAAATTGTAATCATGAAATGAAT
TGCTAGATGGATTAGCATTTTGAAACATAGACACATGACTGACATTGCTA
AACGGTGAAGACCTCTGTGTGTTGGAGGAATTAGATTTCTGAGCCACCAG
ACACAGCAGTAAGATTATTGATGGCTGGAGCAACATTACTTCTTGGCTGG
GGAGAAGATTTTGTTTTCTTCAATGGTGATGGTTTCGAATCACTAGCATA
TCCGATTTCAGTAGAAGAATTACCTCTTTTCATTGGACTTATATTTGGTT
TCCGTGGTTGACACATTTCTTTCACTATGTCCAAATTGTTTGTGAATGTT
TTGTCAACCTTTTCAAACTCTTTCCTTAATTTACAAAAGGCTTTGTATCG
AGAAGACATCATACCGAACATGATTTGTATATTATTTCCCAGAACAGTAG
CTTCACCTCCTTGCTGGTTAAGGACTTTCAGGAAATCAATATAGATGAAA
ACAATGTGAGCGATTCTCTCCATTTGCTCCCCTCGAACATACAAACATTT
ACTCTGGGGATCGATCCATAAATAATTTTGACCACTCTTTCGAGGACCAG
TATCTGTTGTTTCTggaatttttgatgttttactcCAAAATACACTGCCA
GCAAATTGATTTTGTAGTCGATCACGATTAAATTTATCCATATCTGGCTT
GGTTACCTTTTTCTTATCCTTGGCTTCAATAGCAACTGTTCCCAAATCAG
GAACTTCAATTCTTATGTCACACGAATGATTTTTTGATTCTTCGTCTATG
TCATAATCCTTTACATTCAAATCTTCGATTGCACGATCCAAAGCAAATTT
AATACATTCTTCGAAAGTTTTACCTTTTGCAGAAGATTCAACGCTATCAT
AAAGCTCTTTTTTCTGGATTAAATGTTCAGCTTGTTTAACCTTTTCCTCA
TTTTCAGCTAATTGTGAGGTTAGTTCCTCAGCATTTTTCTTTTGGATTTC
TGCGAGCCTTTTCTGTTTCTCTAGATCTTTTTCTGCTTCCTCAGCTTTTT
TCTTTTGGATTTCTGCGAGCCTTTTCTGTTTCTCTCGATCTGTAAAAGat
cgtgaaaagtagataacgAAAGTGGTgttgtttttaaagttttgtcAATT
ATAACCTCTCATAATGGTCCTGATAGCCATATGCTTATTTTCTGGTAACG
TCATAAGCTGCTCATCAATTT
Run BLAST on NCBI

transcript from alignment at sc0000019:972428..984055-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002346 ID=TCONS_00002346|Name=TCONS_00002346|organism=Clytia hemisphaerica|type=transcript|length=11628bp|location=Sequence derived from alignment at sc0000019:972428..984055- (Clytia hemisphaerica)
TTGTCAATGCATCATGTCTCATTTTCATCGTCGTCCTCACAAGTAACATT
ATATTAAGTGGTTGTGGAGTGAGACTTTGGTATGGACCACCAGTGAAATT
AACAGCTGTACCATGAAGTTTATGTCCATTACCACCATAATTGATTAAAT
TAAGATAGGGTTGGTGCGCAGAAAAATTGTAATCATGAAATGAATTGCTA
GATGGATTAGCATTTTGAAACATAGACACATGACTGACATTGCTAAACGG
TGAAGACCTCTGTGTGTTGGAGGAATTAGATTTCTGAGCCACCAGACACA
GCAGTAAGATTATTGATGGCTGGAGCAACATTACTTCTTGGCTGGGGAGA
AGATTTTGTTTTCTTCAATGGTGATGGTTTCGAATCACNGAAACAATAAA
TACTCCAAGAGAGCTGTTTTAGAGATATGAAAATAGTGACGTCATTTTAT
CAAAAATACAAAGCAAGGGATAAAAATATTGAAACATTTATAAATTATAA
TCCCATTGATGCTATTTTCATCAATTTTTGTTATCATACCCAAGGTGATG
CAGGATATAAAATGAGATATGACATAGTGATTGTGAAATAGCTATTTTCC
TGTCAGGGGGCGTTTAAAGCAAAAGGTTTTTTAATACGTATTCTTTGTAT
ATAACATACATAACATGCATATAACCTTGAAAAGATAATTTTTATTACAT
GTGTGATATAGGTGTAATATATAATACAAGTATTACAGGTCCGTGTTATA
CACGACATAAAACGCGAAAGCAAGTGGTAAGCACTTGGATAGATTTTTGG
CTTTAAAATAGTTCTAGATCAATAAAATACCTTTGGAATTATATTTTTGA
CATTAACAACTGTTGTTCAAACATTTTCTTTGTGTTTTACAGTACTTGAA
GCTGACCTGTCAACACTGACCTGTGACCTGTGACCCGTGACCTGTGACAT
GTGACCTGTGTTTTACACTAACCGAATTATTTATGAAATATATAAAAAAA
ATATATCATAAAATCTGAAAATAAGAAGTTTTACTTTAACTTTTTCCAAA
ACACCCAAAGTCCCACCTAAAGAAATTAACTCCCACCTTAACTTGTTTCT
CCCACCTAAAATCTGGAAAACCCCAAATCCCACCTGAAAATTTCCCAAAT
CCCACCTGAAAATTTTCGACCCAAATCAACAAATCCCCCCCACTATTCTG
GGGGGTGCACACTATGATATATAAAAATGTAAAAAAATCAGTAAATTCAA
ATTTGTATCTGTATTATAAAATATATTGTTTGTCGCAATTTTAGGCTGCT
TAGAATTTAACTTTCAGAACTTTATTTGTGCAATTAAAGAATTAAAATCA
TTTCCCTTAAAAAAAAATTCAAAAAAGATGAGATGAAAAGTTTTCAAATG
ATTTTAAGATTACCTTTTTTTAAGTGGATTAATTTTCGCTTAGACTTTTT
TTCGGTCAAAATTCGAATTTTAAATTTTAGCAATGACTATTTTTCGCGAA
AATGGCCAAAGTTCAGGAAAATCGCGAATATTAATCCACGCGAAAGTCAA
CCCACTTAAGATAAGGCAAAATTAAAATTTGTATGTACGTAAAAAAACCA
TCGCCATGGTAAAAAGCAACACGAAAAATTGCTGAGATTGTCAATGCATC
ATGTCTCATTTTCATCATCGTCCTCACAAGTAACATTATATTAAGTGGTT
GTGGAGTGAGACTTTGGTATGGACCACCAGTGAAATTAACAGCTGTACCA
TGAAGTTTATGTCCATTACCACCATAATTGATTAAATTAAGATAGGGTTG
GTGCGCAGAAAAATTGTAATCATGAAATGAATTGCTAGATGGATTAGCAT
TTTGAAACATAGACACATGACTGACATTGCTAAACGGTGAAGACCTCTGT
GTGTTGGAGGAATTAGATTTCTGAGCCACCAGACACAGCAGTAAGATTAT
TGATGGCTGGAGCAACATTACTTCTTGGCTGGGGAGAAGATTTTGTTTTC
TTCAATGGTGATGGTTTCGAATCACTAGCATATCCGATTTCAGTAGAAGA
ATTACCTCTTTTCATTGGACTTATATTTGGTTTCCGTGGTTGACACATTT
CTTTCACTATGTCCAAATTGTTTGTGAATGTTTTGTCAACCTTTTCAAAC
TCTTTCCTTAATTTACAAAAGGCTTTGTATCGAGAAGACATCATACCGAA
CATGATTTGTATATTATTTCCCAGAACAGTAGCTTCACCTCCTTGCTGGT
TAAGGACTTTCAGGAAATCAATATAGATGAAAACAATGTGAGCGATTCTC
TCCATTTGCTCCCCTCGAACATACAAACATTTACTCTGGGGATCGATCCA
TAAATAATTTTGACCACTCTTTCGAGGACCAGTATCTGTTGTTTCTGGAA
TTTTTGATGTTTTACTCCAAAATACACTGCCAGCAAATTGATTTTGTAGT
CGATCACGATTAAATTTATCCATATCTGGCTTGGTTACCTTTTTCTTATC
CTTGGCTTCAATAGCAACTGTTCCCAAATCAGGAACTTCAATTCTTATGT
CACACGAATGATTTTTTGATTCTTCGTCTATGTCATAATCCTTTACATTC
AAATCTTCGATTGCACGATCCAAAGCAAATTTAATACATTCTTCCAAAGT
TTTACCTTTTGCAGAAGATTCAACGCTATCATAAAGCTCTTTTTTCTGGA
TTAAATGTTCAGCTTTTTTAACCTTTTCCTCATTTTCAGCTATTTGTGAG
GTAAGTTGCTGAGTTTTTTGACGTTCCAAGGCTGTGATTCGTTTTTGCTC
TTCTCGGTCTTTTTCTGCTCTCTCAGCTTTTTTCTTTTCAACTTCTACGA
GCTTTTTCTGTTCCTCTCGGTCTTTTTCTGCTTCTTCTCTGTCTTTTTCT
GCTTCTTCTCGGTCTTTTTCTGCTTCTTCTCGGTCTTTTTCTGCTCTCTC
AGCTTTTTTCTTTTCAACTTCTACGAGCTTTTTCTGTTCCTCTTGGTCCT
TTTGTGCTTTCTCAGCTTTTTCTTTTTCGATTTCTGTGAGCTTTTTCTGC
TCCTCTCTGTCTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCTTTTTCTGCTCTCT
CAGCTTTTTTCTTTTCAACTTCTACGAGCTTTTTCTGTTCCTCTTGGTCC
TTTTGTGCTTTCTCAGCTTTTTCTTTTTCGATTTCTGTGAGCTTTTTCTG
CTCCTCTCTGTCTTTTTCTGCTTTCTTTCGGTCTTTTTCTGCTCTCTCAG
CTTTTTTCTTTTCAACTTCTACGAGCTTTTTCTGTTCCTCTTGGTCCTTT
TGTGCTTTCTCAGCTTTTTCTTTTTGGATTTCTGTGAGCTTTTTCTGCTC
CTCTCTGTCTTTTTCTGCTTTCTCTCGGTCTTTTTCTGCTCTCTCAGCTT
TCTTCTTTTCGATTTCTATTTGTTCATAAGCCTCTTGTTGGCTACACTCT
AACTGTTGTTTAATTTCAAGGTTGACGGTTTTCAAAACTTCGTTGTAGAA
CTTTTGGTGCACTATGGTGGCCCATAGTTGTCAACGTGTTTTATTTATAA
ATTACAAATGGAAATATTGAAAAAATAAAATAAAAATAAAATAAATAAAA
AATAATAAAAAAATATGAAAAAATAGAAATAAAAAAAATAATAAAAAAAT
AAATAAATAAAAAAAAATAAAAATAAATGAAAAAATAGAAATAAAAAAAA
TAATAAAAAAAATCAAAAAAAAAAATCAAAATATAAGTAAAAAATAAAAA
GTATGTGAATTACAGGTAGCCCAGCGTTATCATCTTCACCGTGTGTTATC
TCCATAATATTCTCCAAAAGATAAAAGATGAACGCGTATATGCATGTAAA
CAAACATGGCGGATGAGGTCATGGAGGTTGTTAACTGGAAAGTTAATGAA
AGGCTTGAAACAGATCTAAAGACTCTGGTAAAGCAAAACCGCTTCGTCGA
AAAAAAAACCCTAATTACCCATGGAGTCTTTCTACCCTAGATCGATGAAT
GAGACACTTTAATCTGTGGTATTTAGACAAAATGACACCAATCGAGGCTG
TTAAAGTGTAAAGATGCTGTAGTAGCCAAAGAACTTGAGGGACCTGGTAA
ACTCTTAGGCTACCGAGCCCTGAACAATAAATTGAGACAAACACCTTTAA
CCTTTCGTATGCAATTACTAAAATTTGCTGAGGGAGGATTTCGTAATGCA
TTTAAAGCGTACACAACAGAGAATGATGCAACAAAAATGTGGGTCATTAA
GAATTTCAAGGCAACAGCTTGGGAAGTATGTGGGCCACGCTATGAAATGA
CCCTTGAGCAGCACACTCGAAAACAAGAGCAGATGCTTACTGCAGCTAAA
GCTATCACAGTGAAATGTGTTACAAGGCCTGGTTTTCGTGAAAATTGATT
CACATATCAGACTATTTTTTTTAGTATTCTTGATGGTGAGCCAGTTACAG
TGGAGCCTTTTGNACTAAAGCTATTACAGTGAAATGTGTTACAAGGCCTG
GTTTTCGTGAAAATTGATTCACATATCAGACTATTTTTTTAGTATTCTTG
ATGGTGAGCCAGTTACAGTGGAGCCTTTTGTTGACGGAGCCTTCATCAAG
TATCTTAATAATGATGGTGTATATACNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNTGCAATGCAGTGACCTCGCAGATTAAAATCACCCACCTCG
TCGTCAGTGAGGTCAAATATTCTCGCAGAAGCTTTGGCCTCTGACGCTCG
TGGTACGATCCCACTGGTTAAGGGAGGGAATCTTCCGAGGCTCATCAGAT
ATGTTTGAAAAACCCATTTATTTTTTAAGGAAAAAGCTTCCGTTGATTGG
CTCGGCACGGAGAAATTTTTTCAGTCAATGCAAAGCAAAACCACTAGCCT
GTACCACCCCGAACGCCCACGGGCGATTTTTATTTTTTTTTTAAATCTTG
CAGTGGTGTCAGTCTGTTTCGGTTAGAGAATTTTTGTGTTTTAGTTTGTC
TCAGACATTTAGAGACTTGTGAAAAATTGTCTCAGACACGGAATAGTGCC
TAACCGTAACAAACTGTACTTCGCGTTATCTTTTCAGCGAAGAATAGTTT
GGTACAGGCTACGAAACCACAGGTTTGCAGTGTCCAGCTGCGGAAGTGAT
CTGCTTGGAAGTTTGTCAAAATACACTCGTTCTTCATTCTCCACTTTGTG
GATTTCTCTTGCTAACTTAACTTATTGCCGACCCAAAAAAATATCAGCGT
TTTGATTGGTCGAGAGCATCGAGATATTTGCGATATTTCATATTTCTTTA
GTCTGGAAATATGACCGCGTTGACTTTTGGGGGACTGGGTAAGCGGTGGG
AGAAAAATCAAAACAAAACAGCCGAAAAGAACTGACTTTCGGAGAAACTG
ACTTGGGAATCAAACATCAAAGGGTGAAACGCAACAAAAATATGTTCAGA
TTAACTTTTACTTTGGAGTTCTTCCATAAAACATAAAAGACACTAAAAAT
CAAATCTGATGAACTAAGAATTTATTATAAAACTACTTGACACCAACCAA
ATATTTTCAACTTGTGGCAAATTTGTCCGTGTGATACCAAACAGTTTTTT
ATCAATGCATACAAAAAACTTGAGATTCTTCAATATTTGCCAATAAAATT
TCTCATAACATAACAAGGAAAGTGTAATGTCTTGTATTAAACCAAATGAC
GAGTGATTTTTATAAAAGTTCTCTCCTAATTCTCGTTCTCGACAACAACG
TACGTCCTTGACTTTTCAACTCAACAATCATTATATCTTCCTTCTAAAAT
TCGAAACATTTAGAGATTGACGATAATCAAGAAAGTATCCAAATTGTTTT
GCTGTTGAAAAAATGTTGTTCTTTAACCATTTTTACAAGCATACATTTCC
ATCGTGGGACTCCCTTCCTCTGCTATTCTTTCCCATGGCCATGTCATCGA
AACAAAAACATAGAAAAAGACTGAATGTTATCAATATGATTAATCCAATG
ATTAAGGTTTTCTCTATCGAAACCATACTGTACATCATCTGCATTTTCAA
TTATCAATCTAGAAACTTTCAAATACATCTCTGAAAAATCTGCAAAACAG
AAAACAAAACTTCTGGATCGAAAATGATCGAAAAATGTTTCTCTATTTTG
TTTTTGTGTGAATATTTTCGGCGGGAAGTTATCGAATGTTATTTTGTTCG
AATTTAACGTTCGAATTAGATTTTCGAATAAAAACATTCGAAAGTACACA
GAAGCAGAAGAAGGCGGAATTAAGTTTTAAAACAAAAAGAGGACAATTTT
TTTGAGTCGACAATAAATTAGTTATCACATGACTTCTCGTGCAATACTCG
ATATTTTACTCGTTCCGAAATTTTACCGATATTTTTCCTCGCCTAAAGGC
TCGGAAAAATATTACGGAAAAATATCGGTACTCGTAAAATATTTCTCGTA
TTGCACTCGAAGTCATGCGATAACTAGTACGTATTCCCGAACTCCAATTA
CTAGGGAGATAATAATGACAGTGACAACGCTGGGCTACGTGGTTTTTTCG
CGTTATTTTTATTTTTTTTTTTTCTTTTTTTTTTAATTTTTTTTTTTAAA
ACGATTTTTTTTTTTTATCAATTTTTTTTTATTTTTCTCTTTTTAAACGA
TTTTTAAAATTTTCATTCAGAAATAAAAAAATATTTTCTTTTTTTTAATT
ACTTTTTAAATTTCTTTCTTACTCGAAGAAAATAATATGTTGACAACGAT
GGGCCACCATAGTGCACATTTACGTGTTGAATATGATCATCCTTATTTTG
AAATGTCAAGGTCAAAGGGTATTGAAAATCCATATTTCACAAAATAGAAT
GCATCGATGGAAATTTTTTTATTTTTCTAATATGCTAGTTAATCTGAAAA
GAAAGAAGTAAACAAGATTGTGTGTTGGGCGGTGAAAAAGAATGCGGCTA
TTATATTTTGATTTTTCCCGACATGTTTCGGACTCGGTCCGTTCTCAAGG
GAATGATATTTCTATAGAAAAAAAAGCGTTTTTATACAAAATTATTCGAC
GTCAAATTGGACAAATACGTCATTTTAGGCGATTTCGGCTTGAAAATGGG
TTGGGGTAAATGGGGCCATCTGATAAGTTGAATTTGGTCTAAAATGAACG
TGTAAATCAGACTTAGGCGCTCGGTTGGAGAAGATTGAGTTCTTGGTTCA
ACCCATGAGGTGCGAGGGTTCTCAGTTCTTTGATCCAGAAGTTTTCTCTC
TGTAGTATTATCCTTTTCATTCGTTCTATATCTGTCTCGTTGATCTGTTC
GATGATGGAAGTAAACAAGATTTAATTATGAATTTTGTACACATCAGAAT
ATCAAATAATCTTAAAGCAAGGACGAACCAAATAAAAAAAGAAAGAAAAG
AAAACACATATCAGCAAAAACAAATTGACCAATATTAATGAAAATGATCT
CATCAGGAAATTTTCTTTAAAAAATATTCAACAAACTCATAGCAGATGAG
TCATCAACTCTGTAGTCTGGTAGAATTAGGTTTTTACCTTCAAAAAAAAA
TAACATGAGGCTAAAATGTGACACAGAGTTTCCTTAAAAACCACCAAAAA
ATCCAAAGTCAATTCGAAAGGTTTTGAACCTTTTTGGGATATTTTATGAT
GATTTTTAGTACAAATCCCTTGCAAATAAGATTTTCAAAAAGTGTTCAAA
CAATAAATTTTGACCTGTTAAATTCAAATCTTCGATTGCACGATTCAAAG
CAAATTTAATACATTCTTCGAAAGTTTTACCTTTTGCAGAAGATTCAACG
CTATCATAAAGCTCTTTTTTCTGGATTAAATGTTCAGCTTGTTTAACCTT
TTCCTCATTTTCAGCTAATTGTGAGGTTAGTTCCTCAGCATTTTTCTTTT
GGATTTCTGCGAGCCTTTTCTGTTTCTCTAGATCTTTTTCTGCTTCCTCA
GCTTTTTTCTTTTGGATTTCTGCGAGCCTTTTCTGTTTCTCTCGATCTGT
AAAAGATCGTGAAAAGTAGATAACGAAAGTGGTGTTGTTTTTAAAGTTTT
GTCAATTATAACCTCTCATAATGGTCCTGATAGCCATATGCTTATTTTCT
GGTAACGTCATAAGCTGCTCATCAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001237XLOC_001237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002346-exon-sc0000019-1575043694:984004..984055TCONS_00002346-exon-sc0000019-1575043694:984004..984055Clytia hemisphaericaexon
TCONS_00002346-exon-sc0000019-1575043694:981419..982371TCONS_00002346-exon-sc0000019-1575043694:981419..982371Clytia hemisphaericaexon
TCONS_00002346-exon-sc0000019-1575043694:972428..972793TCONS_00002346-exon-sc0000019-1575043694:972428..972793Clytia hemisphaericaexon
TCONS_00002346-exon-sc0000019-1510915933:984004..984055TCONS_00002346-exon-sc0000019-1510915933:984004..984055Clytia hemisphaericaexon
TCONS_00002346-exon-sc0000019-1510915933:981419..982371TCONS_00002346-exon-sc0000019-1510915933:981419..982371Clytia hemisphaericaexon
TCONS_00002346-exon-sc0000019-1510915933:972428..972793TCONS_00002346-exon-sc0000019-1510915933:972428..972793Clytia hemisphaericaexon
TCONS_00002346-exon-sc0000019-1491911889:984004..984055TCONS_00002346-exon-sc0000019-1491911889:984004..984055Clytia hemisphaericaexon
TCONS_00002346-exon-sc0000019-1491911889:981419..982371TCONS_00002346-exon-sc0000019-1491911889:981419..982371Clytia hemisphaericaexon
TCONS_00002346-exon-sc0000019-1491911889:972428..972793TCONS_00002346-exon-sc0000019-1491911889:972428..972793Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:972428..984055 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.366645	0.279467	0.0318797	0.3965	0.068586	0.123501	0.145868	0.351231	0.341494	0	0	0	0	0	0.690035	0	0.153715	0	0.140819	8.45343e-08	0.0278125	0	0	0	0	0	0.331746
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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