TCONS_00002357 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002357
Unique NameTCONS_00002357
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002357 ID=TCONS_00002357|Name=TCONS_00002357|organism=Clytia hemisphaerica|type=transcript|length=238bp
GTCCTATCATTTCCATTTCACGGAAGACGTGTCAGTATCCTTTTTGAACT
AAGGTTTGCCTTGACTTCCCGTTTGTTCAGACTTCGGTAGACGAGATACT
ATAGATACAACTCGGGAATTGCATTCTTTCTATTGGTCAAAAATAAACCA
ATAAAATGTCTCCATTTTGACTTCAACCCGTTtggttattcatgatatgc
accattgcaatgtctttcacggacccaacagctgattg
Run BLAST on NCBI

transcript from alignment at sc0000019:51270..51507

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002357 ID=TCONS_00002357|Name=TCONS_00002357|organism=Clytia hemisphaerica|type=transcript|length=238bp|location=Sequence derived from alignment at sc0000019:51270..51507 (Clytia hemisphaerica)
caatcagctgttgggtccgtgaaagacattgcaatggtgcatatcatgaa
taaccaAACGGGTTGAAGTCAAAATGGAGACATTTTATTGGTTTATTTTT
GACCAATAGAAAGAATGCAATTCCCGAGTTGTATCTATAGTATCTCGTCT
ACCGAAGTCTGAACAAACGGGAAGTCAAGGCAAACCTTAGTTCAAAAAGG
ATACTGACACGTCTTCCGTGAAATGGAAATGATAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001244XLOC_001244Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002357-exon-sc0000019-1491911889:51270..51507TCONS_00002357-exon-sc0000019-1491911889:51270..51507Clytia hemisphaericaexon
TCONS_00002357-exon-sc0000019-1510915933:51270..51507TCONS_00002357-exon-sc0000019-1510915933:51270..51507Clytia hemisphaericaexon
TCONS_00002357-exon-sc0000019-1575043694:51270..51507TCONS_00002357-exon-sc0000019-1575043694:51270..51507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:51270..51507 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.85774	0	2.10343	1.02894	1.25263	0.989849	1.19421	0	0.782742	0	0.941071	0	16.0618	7.05708	0.527444	1.13206	14.6433	2.85884	16.786	19.6318	2.69426	6.57082	2.13005	4.84131	11.9675	12.4608	1.27367	4.07787	7.21682	7.3528
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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