TCONS_00002362 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002362
Unique NameTCONS_00002362
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length861

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002362 ID=TCONS_00002362|Name=TCONS_00002362|organism=Clytia hemisphaerica|type=transcript|length=861bp
GTTTGGTTGCAGGTATCTAAACAAATCTACTTTTACATTCGTAGGAGCAG
GTTTTCCATTGACTGGGATCATACTACATATTGAAACAGGTGCATCAATC
AACTTGATTGATCGAGACGAAAACGCTGTGTTGACAGCACGAAAGTTCCT
ATCATTGCTTGAAGAACTTGGTATCGTTAGACAAGGAGCAATTAATGTTA
TCCGTGCAGATGCAACTGATGTTCTTTACCTACCTAAAAACTTGATCCAT
GAAAAAGACACATTATCCAGTAAAGTCATAGTTCAAACTGATATATTAGA
TCTAGCCAGTGCTCTACCTGCTGAAACAACAGCCAAAGTGTTAAAGGAAA
ATGCATCCAAAGTCCCTTTAATCCGCAAACGAAATGTTAGAGGAATGTCA
GAAATCTGGTATGAAAGATTTATTTTGCCAAAAGGCAATGATTTTAAGCT
TGTTGGCGAAGTCACTCCCCCGCAAAGTGTAGTGAATCAGGCAACACCCT
CAAACCTTGTTGTAGGCTTAACATCCCCAATCAATATCAACTCATGTCAG
TTGTATGTTAACACATCAAATTCTGACTCTAAGCTTGCATATCTTGAGAA
AATGCATAGTTTATGGCACTTGGACAATAATGGTATCGGGAATGTGGTAT
TGGATGACAAGATCAAACAGTTTTATGAAGGGTGAAGTTAAAAAATCCCA
AGGGATGAAAGATAAGAAGAGAGATGGAAAGACCTGAGTGAGATCAGgac
atcaaaattacaaaattaaatattactgTCTGACTCGAACCTCATTATGA
GgtaaaaccgcttttttatcagATATTGTCCAATCCACCTTTTGAAGCAG
TTACTTTCAGC
Run BLAST on NCBI

protein sequence of TCONS_00002362-protein

>TCONS_00002362-protein ID=TCONS_00002362-protein|Name=TCONS_00002362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
FGCRYLNKSTFTFVGAGFPLTGIILHIETGASINLIDRDENAVLTARKFL
SLLEELGIVRQGAINVIRADATDVLYLPKNLIHEKDTLSSKVIVQTDILD
LASALPAETTAKVLKENASKVPLIRKRNVRGMSEIWYERFILPKGNDFKL
VGEVTPPQSVVNQATPSNLVVGLTSPININSCQLYVNTSNSDSKLAYLEK
MHSLWHLDNNGIGNVVLDDKIKQFYEG
Run BLAST on NCBI

transcript from alignment at sc0000019:77261..78121

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002362 ID=TCONS_00002362|Name=TCONS_00002362|organism=Clytia hemisphaerica|type=transcript|length=861bp|location=Sequence derived from alignment at sc0000019:77261..78121 (Clytia hemisphaerica)
GCTGAAAGTAACTGCTTCAAAAGGTGGATTGGACAATATctgataaaaaa gcggttttacCTCATAATGAGGTTCGAGTCAGAcagtaatatttaatttt gtaattttgatgtcCTGATCTCACTCAGGTCTTTCCATCTCTCTTCTTAT CTTTCATCCCTTGGGATTTTTTAACTTCACCCTTCATAAAACTGTTTGAT CTTGTCATCCAATACCACATTCCCGATACCATTATTGTCCAAGTGCCATA AACTATGCATTTTCTCAAGATATGCAAGCTTAGAGTCAGAATTTGATGTG TTAACATACAACTGACATGAGTTGATATTGATTGGGGATGTTAAGCCTAC AACAAGGTTTGAGGGTGTTGCCTGATTCACTACACTTTGCGGGGGAGTGA CTTCGCCAACAAGCTTAAAATCATTGCCTTTTGGCAAAATAAATCTTTCA TACCAGATTTCTGACATTCCTCTAACATTTCGTTTGCGGATTAAAGGGAC TTTGGATGCATTTTCCTTTAACACTTTGGCTGTTGTTTCAGCAGGTAGAG CACTGGCTAGATCTAATATATCAGTTTGAACTATGACTTTACTGGATAAT GTGTCTTTTTCATGGATCAAGTTTTTAGGTAGGTAAAGAACATCAGTTGC ATCTGCACGGATAACATTAATTGCTCCTTGTCTAACGATACCAAGTTCTT CAAGCAATGATAGGAACTTTCGTGCTGTCAACACAGCGTTTTCGTCTCGA TCAATCAAGTTGATTGATGCACCTGTTTCAATATGTAGTATGATCCCAGT CAATGGAAAACCTGCTCCTACGAATGTAAAAGTAGATTTGTTTAGATACC TGCAACCAAAC

Coding sequence (CDS) from alignment at sc0000019:77261..78121

>TCONS_00002362 ID=TCONS_00002362|Name=TCONS_00002362|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000019:77261..78121 (Clytia hemisphaerica)
TCACCCTTCATAAAACTGTTTGATCTTGTCATCCAATACCACATTCCCGA
TACCATTATTGTCCAAGTGCCATAAACTATGCATTTTCTCAAGATATGCA
AGCTTAGAGTCAGAATTTGATGTGTTAACATACAACTGACATGAGTTGAT
ATTGATTGGGGATGTTAAGCCTACAACAAGGTTTGAGGGTGTTGCCTGAT
TCACTACACTTTGCGGGGGAGTGACTTCGCCAACAAGCTTAAAATCATTG
CCTTTTGGCAAAATAAATCTTTCATACCAGATTTCTGACATTCCTCTAAC
ATTTCGTTTGCGGATTAAAGGGACTTTGGATGCATTTTCCTTTAACACTT
TGGCTGTTGTTTCAGCAGGTAGAGCACTGGCTAGATCTAATATATCAGTT
TGAACTATGACTTTACTGGATAATGTGTCTTTTTCATGGATCAAGTTTTT
AGGTAGGTAAAGAACATCAGTTGCATCTGCACGGATAACATTAATTGCTC
CTTGTCTAACGATACCAAGTTCTTCAAGCAATGATAGGAACTTTCGTGCT
GTCAACACAGCGTTTTCGTCTCGATCAATCAAGTTGATTGATGCACCTGT
TTCAATATGTAGTATGATCCCAGTCAATGGAAAACCTGCTCCTACGAATG
TAAAAGTAGATTTGTTTAGATACCTGCAACCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001249XLOC_001249Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002362-proteinTCONS_00002362-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002362-exon-sc0000019-1491911889:77261..78121TCONS_00002362-exon-sc0000019-1491911889:77261..78121Clytia hemisphaericaexon
TCONS_00002362-exon-sc0000019-1510915933:77261..78121TCONS_00002362-exon-sc0000019-1510915933:77261..78121Clytia hemisphaericaexon
TCONS_00002362-exon-sc0000019-1575043694:77261..78121TCONS_00002362-exon-sc0000019-1575043694:77261..78121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:77261..78121 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.598551 0.26531 0.36966 0.180827 0 0.0579858 0.419745 0.19648 0.412681 0.511171 0.0551284 0.543588 2.13514 0.864397 0.58706 0.36474 4.69754 2.59582 2.71862 7.44501 1.89397 1.84762 0.249559 0.397049 0.175265 0.20856 0.149224 0.159256 0.060395 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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