TCONS_00002364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002364
Unique NameTCONS_00002364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002364 ID=TCONS_00002364|Name=TCONS_00002364|organism=Clytia hemisphaerica|type=transcript|length=494bp
GAAACTGCTCTACCTCTTCTACCTTGATATTTTCACCATTAGATCGAAAT
GAATTCAAGAACCTTGTAAATAGAATGCTACTTTCAACGTTCTTATCCAG
CTTAGTTCTCAAATCGTTCAAAATTCTTTGGAGCATCCAAATCTCATTGC
CGAAAGAGCTCACTTTAACAAAGTCACCAgatttttcaatattatcgaga
TCGGATAGCAATTTTATGACTACCCTGGATCGATTCCTACCTTGGAAAAA
ACCAAAAACGTCAAGTTGTCCAGCTATACTTAACAAAACAGTGTCTGATA
TTAAGTTTGTAATAGCCTTTTGAAAATCATCCGATCGATGGTCAAAAATA
tgatttgtaataaactttaTGTGTGTCAGAAGCAAAGTTTTTCCTCTAgt
caaaaatcttttccggtgtTTCAAATCTTGCAATATGTTTCTTGCACTTT
TCGTTAACTTTGTAGCTTCAATtgaggctattttagtgaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00002364-protein

>TCONS_00002364-protein ID=TCONS_00002364-protein|Name=TCONS_00002364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
FFTKIASIEATKLTKSARNILQDLKHRKRFLTRGKTLLLTHIKFITNHIF
DHRSDDFQKAITNLISDTVLLSIAGQLDVFGFFQGRNRSRVVIKLLSDLD
NIEKSGDFVKVSSFGNEIWMLQRILNDLRTKLDKNVESSILFTRFLNSFR
SNGENIKVEEVEQF
Run BLAST on NCBI

transcript from alignment at sc0000019:101868..102361

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002364 ID=TCONS_00002364|Name=TCONS_00002364|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at sc0000019:101868..102361 (Clytia hemisphaerica)
atttttcactaaaatagcctcaATTGAAGCTACAAAGTTAACGAAAAGTG
CAAGAAACATATTGCAAGATTTGAAacaccggaaaagatttttgacTAGA
GGAAAAACTTTGCTTCTGACACACAtaaagtttattacaaatcaTATTTT
TGACCATCGATCGGATGATTTTCAAAAGGCTATTACAAACTTAATATCAG
ACACTGTTTTGTTAAGTATAGCTGGACAACTTGACGTTTTTGGTTTTTTC
CAAGGTAGGAATCGATCCAGGGTAGTCATAAAATTGCTATCCGAtctcga
taatattgaaaaatcTGGTGACTTTGTTAAAGTGAGCTCTTTCGGCAATG
AGATTTGGATGCTCCAAAGAATTTTGAACGATTTGAGAACTAAGCTGGAT
AAGAACGTTGAAAGTAGCATTCTATTTACAAGGTTCTTGAATTCATTTCG
ATCTAATGGTGAAAATATCAAGGTAGAAGAGGTAGAGCAGTTTC

Coding sequence (CDS) from alignment at sc0000019:101868..102361

>TCONS_00002364 ID=TCONS_00002364|Name=TCONS_00002364|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at sc0000019:101868..102361 (Clytia hemisphaerica)
tttttcactaaaatagcctcaATTGAAGCTACAAAGTTAACGAAAAGTGC
AAGAAACATATTGCAAGATTTGAAacaccggaaaagatttttgacTAGAG
GAAAAACTTTGCTTCTGACACACAtaaagtttattacaaatcaTATTTTT
GACCATCGATCGGATGATTTTCAAAAGGCTATTACAAACTTAATATCAGA
CACTGTTTTGTTAAGTATAGCTGGACAACTTGACGTTTTTGGTTTTTTCC
AAGGTAGGAATCGATCCAGGGTAGTCATAAAATTGCTATCCGAtctcgat
aatattgaaaaatcTGGTGACTTTGTTAAAGTGAGCTCTTTCGGCAATGA
GATTTGGATGCTCCAAAGAATTTTGAACGATTTGAGAACTAAGCTGGATA
AGAACGTTGAAAGTAGCATTCTATTTACAAGGTTCTTGAATTCATTTCGA
TCTAATGGTGAAAATATCAAGGTAGAAGAGGTAGAGCAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001251XLOC_001251Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002364-proteinTCONS_00002364-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002364-exon-sc0000019-1491911889:101868..102361TCONS_00002364-exon-sc0000019-1491911889:101868..102361Clytia hemisphaericaexon
TCONS_00002364-exon-sc0000019-1510915933:101868..102361TCONS_00002364-exon-sc0000019-1510915933:101868..102361Clytia hemisphaericaexon
TCONS_00002364-exon-sc0000019-1575043694:101868..102361TCONS_00002364-exon-sc0000019-1575043694:101868..102361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:101868..102361 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.248967	0	0	0	0	0.132655	0	0.14983	0.1049	0.129935	0	0.0829052	0	0	0.353429	0.68271	0.934491	0.957824	0	0	0	0.352237	0.999111	0.908337	0.400957	0.119281	0.170691	0	13.5403	8.72774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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