TCONS_00002369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002369
Unique NameTCONS_00002369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002369 ID=TCONS_00002369|Name=TCONS_00002369|organism=Clytia hemisphaerica|type=transcript|length=469bp
AAAAGCACTATTTTAGTTCGACGGTTCGTTTTATGTTTAAGGTATCTTAG
ATTTAGATACACGGTAAAAAATCGGTCCACGGTCAAAACAATAAGGATTA
ATAAGAACCAAATAAAAGAACCACCACCAGAGCAAATCATCATAAAATTC
ATCCAACGTTCATTTCCAACTAATTTGAAGCCATAATAATGTGCCAAGAA
AATGGCGTGTACGTTTTCAGCGACACTCAAATTCAACAAATAAAAACGTT
GCATGACGATATAAGGGTTTGTTTGTTTGACGTTCCATAAAACAATAAAA
CCAAAAGTATGCATCAGTGATGCGATGATGGATAACGAAAGACGTAACAC
GTTCCAATCCATTTTCCCAATCTAAATGACTTCTGTTTAGCCTCAGTGAT
TTATTGCCAATTTTCTGTTATACACTTAAAATATAGCAATAATAATATAA
TCTTTTCAACAAAgtcttt
Run BLAST on NCBI

protein sequence of TCONS_00002369-protein

>TCONS_00002369-protein ID=TCONS_00002369-protein|Name=TCONS_00002369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MDWNVLRLSLSIIASLMHTFGFIVLWNVKQTNPYIVMQRFYLLNLSVAEN
VHAIFLAHYYGFKLVGNERWMNFMMICSGGGSFIWFLLILIVLTVDRFFT
VYLNLRYLKHKTNRRTKIVL
Run BLAST on NCBI

transcript from alignment at sc0000019:198569..199037

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002369 ID=TCONS_00002369|Name=TCONS_00002369|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at sc0000019:198569..199037 (Clytia hemisphaerica)
aaagacTTTGTTGAAAAGATTATATTATTATTGCTATATTTTAAGTGTAT
AACAGAAAATTGGCAATAAATCACTGAGGCTAAACAGAAGTCATTTAGAT
TGGGAAAATGGATTGGAACGTGTTACGTCTTTCGTTATCCATCATCGCAT
CACTGATGCATACTTTTGGTTTTATTGTTTTATGGAACGTCAAACAAACA
AACCCTTATATCGTCATGCAACGTTTTTATTTGTTGAATTTGAGTGTCGC
TGAAAACGTACACGCCATTTTCTTGGCACATTATTATGGCTTCAAATTAG
TTGGAAATGAACGTTGGATGAATTTTATGATGATTTGCTCTGGTGGTGGT
TCTTTTATTTGGTTCTTATTAATCCTTATTGTTTTGACCGTGGACCGATT
TTTTACCGTGTATCTAAATCTAAGATACCTTAAACATAAAACGAACCGTC
GAACTAAAATAGTGCTTTT

Coding sequence (CDS) from alignment at sc0000019:198569..199037

>TCONS_00002369 ID=TCONS_00002369|Name=TCONS_00002369|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000019:198569..199037 (Clytia hemisphaerica)
ATGGATTGGAACGTGTTACGTCTTTCGTTATCCATCATCGCATCACTGAT
GCATACTTTTGGTTTTATTGTTTTATGGAACGTCAAACAAACAAACCCTT
ATATCGTCATGCAACGTTTTTATTTGTTGAATTTGAGTGTCGCTGAAAAC
GTACACGCCATTTTCTTGGCACATTATTATGGCTTCAAATTAGTTGGAAA
TGAACGTTGGATGAATTTTATGATGATTTGCTCTGGTGGTGGTTCTTTTA
TTTGGTTCTTATTAATCCTTATTGTTTTGACCGTGGACCGATTTTTTACC
GTGTATCTAAATCTAAGATACCTTAAACATAAAACGAACCGTCGAACTAA
AATAGTGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001256XLOC_001256Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002369-proteinTCONS_00002369-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002369-exon-sc0000019-1491911889:198569..199037TCONS_00002369-exon-sc0000019-1491911889:198569..199037Clytia hemisphaericaexon
TCONS_00002369-exon-sc0000019-1510915933:198569..199037TCONS_00002369-exon-sc0000019-1510915933:198569..199037Clytia hemisphaericaexon
TCONS_00002369-exon-sc0000019-1575043694:198569..199037TCONS_00002369-exon-sc0000019-1575043694:198569..199037Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:198569..199037 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.136453	0.171354	0.450303	0.428837	10.135	6.69758	6.03172	8.35429	3.21283	0.944425	2.16922	2.74062	0	0	0.703882	0.0831505	0	0.274757	0.562727	0.607148	1.14877	1.42541	0.672343	1.32688	0	0.740248	0	0	0.282931	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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