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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002376 ID=TCONS_00002376|Name=TCONS_00002376|organism=Clytia hemisphaerica|type=transcript|length=1655bp
TGTTCATAATTCGACATGTTATCAATGCCCCTTTCAAGCTTCTTGTATTA
ACGGTATCAAAAGTAGAGGAAACTATTGGGGTTACTCAAACTCATCTGGA
TATGTGACATTTAAGATATGTCCACCCTTTTATTGTTGTGATCGTTTAAA
AAGATGTCATTCGTATAATACGTGTGCGAACAGGCGTCAAGGGCGGTTGT
GTGGAGGGTGTAGACCTGGAGACTTTATAAGCATATTTAGTCATAACAAA
TGTGTTGATAGTTCAAAATGCTTGGCAAGTTGGTTCTGGATTGTTTTTGC
AATCGTTATCGTATTATCTTTCGGATTGCTACTATACCACAAAGATGTAC
TTCTCACTATTAAAAACAAACTACATAAACTATATGCGAGATTGACCAGG
ATTGACCGTGGAGAATCTGTTCGAAATAGATTCCCGGATACTCCTTATAA
CTTGATCAGCGACAATGAAGAAAATGAGACAAACTCACACAATGAACTTA
ACTTTGATCAACAATCATATATTTCAggtctcatcaaaatcacttttttc
ttttaccaaaCAGCTTCAATTATACGAATCACTTCTTCAGCTAAAATGGA
ATATCACACGCCATATCTTATTGAAACTCTTTCATCATTTTTCGACATTA
AAATCGCAATCAAATCTTCCAATCTGATCGATTTGTGCCCTATCCAAACA
CAGAGTATTGCTGCTATTGAACTTTTCAGATTAAGTATCGTTCTTTCGTG
TATTATTCTAATACCAGTATCACTTGTCGCGGTCAGCCTTGTCAGATACC
ACCAGGAAAACCAATATAAAACCTCACCTTTCGTCAACCGGTTGAAAGTA
AGCTATGTTCAGATTCTAATTCTTGGCTATGCTAGCATTGCAACATTTTG
TTTACAATCTGTGGATTGTATTGAAATTGATGGTGGACTGTGGATTTTTA
ATCAAGCTGAAGTGGCGTGTTACCAACAATGGCAGATCATGGTTTTTGTG
GTGATTTGTCTTTGGATTGTTCCCTTTCCCTTTGTATTATATTTTGGTTG
CTGTTGGCTTCGATCAAAAGCAATCACACCAAATGAAATGTTGGTGACCC
TTACATTTCCACCAGTAGTATTGCTTTACAAAACAAGAAACTGGTACCTT
GGTCAATCTCAGAATGTATGGCCAGAGCAAATGACCATAGAGCAGAGTGA
CATTTCAAACTTCATGAATCAACCTTTTCGATTGAATATAAACGAAGTTG
AAACGTCTGAACAAATAATATGCAAGTCAgttaaaattgtttgggagccG
GTGTTTGTCGCACGTCGATTGATCCTTATCATTAGTACCACGTTCATCCG
GTCACCGATCATGAAATTATACCCAACTGGATTTCTGTTGATTATGTTCA
GTATCCATGATTACACAGTCAAACCGTTTGTCGAAAAGTCGCTCAATTTC
ATACAATTAATGTCAATGTTGTTATTAATAACTCTAGCGTTTGACATTAT
AGATAATTCAGAGTATTATTTGACCggtaaaattcttttgtttattgaAT
TAATAATCTTACTTTCACCTATTATTTTGGTTATTGTAGCTTTATTTTAT
AGATTGTTTAATTATATATACaagttatttttgagaaaattagatTAGGA
TAAAG Run BLAST on NCBI protein sequence of TCONS_00002376-protein >TCONS_00002376-protein ID=TCONS_00002376-protein|Name=TCONS_00002376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp
VHNSTCYQCPFQASCINGIKSRGNYWGYSNSSGYVTFKICPPFYCCDRLK
RCHSYNTCANRRQGRLCGGCRPGDFISIFSHNKCVDSSKCLASWFWIVFA
IVIVLSFGLLLYHKDVLLTIKNKLHKLYARLTRIDRGESVRNRFPDTPYN
LISDNEENETNSHNELNFDQQSYISGLIKITFFFYQTASIIRITSSAKME
YHTPYLIETLSSFFDIKIAIKSSNLIDLCPIQTQSIAAIELFRLSIVLSC
IILIPVSLVAVSLVRYHQENQYKTSPFVNRLKVSYVQILILGYASIATFC
LQSVDCIEIDGGLWIFNQAEVACYQQWQIMVFVVICLWIVPFPFVLYFGC
CWLRSKAITPNEMLVTLTFPPVVLLYKTRNWYLGQSQNVWPEQMTIEQSD
ISNFMNQPFRLNINEVETSEQIICKSVKIVWEPVFVARRLILIISTTFIR
SPIMKLYPTGFLLIMFSIHDYTVKPFVEKSLNFIQLMSMLLLITLAFDII
DNSEYYLTGKILLFIELIILLSPIILVIVALFYRLFNYIYKLFLRKLD Run BLAST on NCBI transcript from alignment at sc0000019:369836..371490 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002376 ID=TCONS_00002376|Name=TCONS_00002376|organism=Clytia hemisphaerica|type=transcript|length=1655bp|location=Sequence derived from alignment at sc0000019:369836..371490 (Clytia hemisphaerica)
CTTTATCCTAatctaattttctcaaaaataacttGTATATATAATTAAAC
AATCTATAAAATAAAGCTACAATAACCAAAATAATAGGTGAAAGTAAGAT
TATTAATtcaataaacaaaagaattttaccGGTCAAATAATACTCTGAAT
TATCTATAATGTCAAACGCTAGAGTTATTAATAACAACATTGACATTAAT
TGTATGAAATTGAGCGACTTTTCGACAAACGGTTTGACTGTGTAATCATG
GATACTGAACATAATCAACAGAAATCCAGTTGGGTATAATTTCATGATCG
GTGACCGGATGAACGTGGTACTAATGATAAGGATCAATCGACGTGCGACA
AACACCggctcccaaacaattttaacTGACTTGCATATTATTTGTTCAGA
CGTTTCAACTTCGTTTATATTCAATCGAAAAGGTTGATTCATGAAGTTTG
AAATGTCACTCTGCTCTATGGTCATTTGCTCTGGCCATACATTCTGAGAT
TGACCAAGGTACCAGTTTCTTGTTTTGTAAAGCAATACTACTGGTGGAAA
TGTAAGGGTCACCAACATTTCATTTGGTGTGATTGCTTTTGATCGAAGCC
AACAGCAACCAAAATATAATACAAAGGGAAAGGGAACAATCCAAAGACAA
ATCACCACAAAAACCATGATCTGCCATTGTTGGTAACACGCCACTTCAGC
TTGATTAAAAATCCACAGTCCACCATCAATTTCAATACAATCCACAGATT
GTAAACAAAATGTTGCAATGCTAGCATAGCCAAGAATTAGAATCTGAACA
TAGCTTACTTTCAACCGGTTGACGAAAGGTGAGGTTTTATATTGGTTTTC
CTGGTGGTATCTGACAAGGCTGACCGCGACAAGTGATACTGGTATTAGAA
TAATACACGAAAGAACGATACTTAATCTGAAAAGTTCAATAGCAGCAATA
CTCTGTGTTTGGATAGGGCACAAATCGATCAGATTGGAAGATTTGATTGC
GATTTTAATGTCGAAAAATGATGAAAGAGTTTCAATAAGATATGGCGTGT
GATATTCCATTTTAGCTGAAGAAGTGATTCGTATAATTGAAGCTGtttgg
taaaagaaaaaagtgattttgatgagaccTGAAATATATGATTGTTGATC
AAAGTTAAGTTCATTGTGTGAGTTTGTCTCATTTTCTTCATTGTCGCTGA
TCAAGTTATAAGGAGTATCCGGGAATCTATTTCGAACAGATTCTCCACGG
TCAATCCTGGTCAATCTCGCATATAGTTTATGTAGTTTGTTTTTAATAGT
GAGAAGTACATCTTTGTGGTATAGTAGCAATCCGAAAGATAATACGATAA
CGATTGCAAAAACAATCCAGAACCAACTTGCCAAGCATTTTGAACTATCA
ACACATTTGTTATGACTAAATATGCTTATAAAGTCTCCAGGTCTACACCC
TCCACACAACCGCCCTTGACGCCTGTTCGCACACGTATTATACGAATGAC
ATCTTTTTAAACGATCACAACAATAAAAGGGTGGACATATCTTAAATGTC
ACATATCCAGATGAGTTTGAGTAACCCCAATAGTTTCCTCTACTTTTGAT
ACCGTTAATACAAGAAGCTTGAAAGGGGCATTGATAACATGTCGAATTAT
GAACA Coding sequence (CDS) from alignment at sc0000019:369836..371490 >TCONS_00002376 ID=TCONS_00002376|Name=TCONS_00002376|organism=Clytia hemisphaerica|type=CDS|length=1647bp|location=Sequence derived from alignment at sc0000019:369836..371490 (Clytia hemisphaerica)
CTAatctaattttctcaaaaataacttGTATATATAATTAAACAATCTAT
AAAATAAAGCTACAATAACCAAAATAATAGGTGAAAGTAAGATTATTAAT
tcaataaacaaaagaattttaccGGTCAAATAATACTCTGAATTATCTAT
AATGTCAAACGCTAGAGTTATTAATAACAACATTGACATTAATTGTATGA
AATTGAGCGACTTTTCGACAAACGGTTTGACTGTGTAATCATGGATACTG
AACATAATCAACAGAAATCCAGTTGGGTATAATTTCATGATCGGTGACCG
GATGAACGTGGTACTAATGATAAGGATCAATCGACGTGCGACAAACACCg
gctcccaaacaattttaacTGACTTGCATATTATTTGTTCAGACGTTTCA
ACTTCGTTTATATTCAATCGAAAAGGTTGATTCATGAAGTTTGAAATGTC
ACTCTGCTCTATGGTCATTTGCTCTGGCCATACATTCTGAGATTGACCAA
GGTACCAGTTTCTTGTTTTGTAAAGCAATACTACTGGTGGAAATGTAAGG
GTCACCAACATTTCATTTGGTGTGATTGCTTTTGATCGAAGCCAACAGCA
ACCAAAATATAATACAAAGGGAAAGGGAACAATCCAAAGACAAATCACCA
CAAAAACCATGATCTGCCATTGTTGGTAACACGCCACTTCAGCTTGATTA
AAAATCCACAGTCCACCATCAATTTCAATACAATCCACAGATTGTAAACA
AAATGTTGCAATGCTAGCATAGCCAAGAATTAGAATCTGAACATAGCTTA
CTTTCAACCGGTTGACGAAAGGTGAGGTTTTATATTGGTTTTCCTGGTGG
TATCTGACAAGGCTGACCGCGACAAGTGATACTGGTATTAGAATAATACA
CGAAAGAACGATACTTAATCTGAAAAGTTCAATAGCAGCAATACTCTGTG
TTTGGATAGGGCACAAATCGATCAGATTGGAAGATTTGATTGCGATTTTA
ATGTCGAAAAATGATGAAAGAGTTTCAATAAGATATGGCGTGTGATATTC
CATTTTAGCTGAAGAAGTGATTCGTATAATTGAAGCTGtttggtaaaaga
aaaaagtgattttgatgagaccTGAAATATATGATTGTTGATCAAAGTTA
AGTTCATTGTGTGAGTTTGTCTCATTTTCTTCATTGTCGCTGATCAAGTT
ATAAGGAGTATCCGGGAATCTATTTCGAACAGATTCTCCACGGTCAATCC
TGGTCAATCTCGCATATAGTTTATGTAGTTTGTTTTTAATAGTGAGAAGT
ACATCTTTGTGGTATAGTAGCAATCCGAAAGATAATACGATAACGATTGC
AAAAACAATCCAGAACCAACTTGCCAAGCATTTTGAACTATCAACACATT
TGTTATGACTAAATATGCTTATAAAGTCTCCAGGTCTACACCCTCCACAC
AACCGCCCTTGACGCCTGTTCGCACACGTATTATACGAATGACATCTTTT
TAAACGATCACAACAATAAAAGGGTGGACATATCTTAAATGTCACATATC
CAGATGAGTTTGAGTAACCCCAATAGTTTCCTCTACTTTTGATACCGTTA
ATACAAGAAGCTTGAAAGGGGCATTGATAACATGTCGAATTATGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002376-exon-sc0000019-1491911889:369836..371490 | TCONS_00002376-exon-sc0000019-1491911889:369836..371490 | Clytia hemisphaerica | exon |
| TCONS_00002376-exon-sc0000019-1510915933:369836..371490 | TCONS_00002376-exon-sc0000019-1510915933:369836..371490 | Clytia hemisphaerica | exon |
| TCONS_00002376-exon-sc0000019-1575043694:369836..371490 | TCONS_00002376-exon-sc0000019-1575043694:369836..371490 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:369836..371490 . |
Blast
The following BLAST results are available for this feature:
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