TCONS_00002385 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002385
Unique NameTCONS_00002385
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002385 ID=TCONS_00002385|Name=TCONS_00002385|organism=Clytia hemisphaerica|type=transcript|length=358bp
ACAAAGATTGGTATCAGTAGCTCAACAGCCAGTCTCATGATGATGGTATG
GTCTGCCTGTAATATTTGTGGCCGTCTATCCTTTGGTGCTTTTATAGCCC
GTAATCGTAGCAAAGTCCTTATAACATTTCAAACAGCAATGTTCCTGTGC
GGAGTGGTCAGCGCTGCAGCTTATTTTGCCGACAATACATGGAGTTTGTT
TCTCTATTGTTGTGTCTATGGAATGTTGGATGGATCGAATATTGGTTTAG
CCAGTCTGGTGACAATTGATTTGACAAGTCCACTCGATTTGGGTGCAGCT
TGGGGTATACAACAAACGATCAATGGGGTTCCAACCATTGCTGGTCCTGT
GTTGATTG
Run BLAST on NCBI

protein sequence of TCONS_00002385-protein

>TCONS_00002385-protein ID=TCONS_00002385-protein|Name=TCONS_00002385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
TKIGISSSTASLMMMVWSACNICGRLSFGAFIARNRSKVLITFQTAMFLC
GVVSAAAYFADNTWSLFLYCCVYGMLDGSNIGLASLVTIDLTSPLDLGAA
WGIQQTINGVPTIAGPVLI
Run BLAST on NCBI

transcript from alignment at sc0000019:502390..502747

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002385 ID=TCONS_00002385|Name=TCONS_00002385|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at sc0000019:502390..502747 (Clytia hemisphaerica)
CAATCAACACAGGACCAGCAATGGTTGGAACCCCATTGATCGTTTGTTGT
ATACCCCAAGCTGCACCCAAATCGAGTGGACTTGTCAAATCAATTGTCAC
CAGACTGGCTAAACCAATATTCGATCCATCCAACATTCCATAGACACAAC
AATAGAGAAACAAACTCCATGTATTGTCGGCAAAATAAGCTGCAGCGCTG
ACCACTCCGCACAGGAACATTGCTGTTTGAAATGTTATAAGGACTTTGCT
ACGATTACGGGCTATAAAAGCACCAAAGGATAGACGGCCACAAATATTAC
AGGCAGACCATACCATCATCATGAGACTGGCTGTTGAGCTACTGATACCA
ATCTTTGT

Coding sequence (CDS) from alignment at sc0000019:502390..502747

>TCONS_00002385 ID=TCONS_00002385|Name=TCONS_00002385|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000019:502390..502747 (Clytia hemisphaerica)
AATCAACACAGGACCAGCAATGGTTGGAACCCCATTGATCGTTTGTTGTA
TACCCCAAGCTGCACCCAAATCGAGTGGACTTGTCAAATCAATTGTCACC
AGACTGGCTAAACCAATATTCGATCCATCCAACATTCCATAGACACAACA
ATAGAGAAACAAACTCCATGTATTGTCGGCAAAATAAGCTGCAGCGCTGA
CCACTCCGCACAGGAACATTGCTGTTTGAAATGTTATAAGGACTTTGCTA
CGATTACGGGCTATAAAAGCACCAAAGGATAGACGGCCACAAATATTACA
GGCAGACCATACCATCATCATGAGACTGGCTGTTGAGCTACTGATACCAA
TCTTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001272XLOC_001272Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002385-exon-sc0000019-1491911889:502390..502747TCONS_00002385-exon-sc0000019-1491911889:502390..502747Clytia hemisphaericaexon
TCONS_00002385-exon-sc0000019-1510915933:502390..502747TCONS_00002385-exon-sc0000019-1510915933:502390..502747Clytia hemisphaericaexon
TCONS_00002385-exon-sc0000019-1575043694:502390..502747TCONS_00002385-exon-sc0000019-1575043694:502390..502747Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002385-proteinTCONS_00002385-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:502390..502747 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.642197	2.28363	0.306122	0.286588	0	0.248534	0	0.317154	0.316713	0.164455	0	0.145095	0	0	1.51867	0.794589	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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