TCONS_00002392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002392
Unique NameTCONS_00002392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002392 ID=TCONS_00002392|Name=TCONS_00002392|organism=Clytia hemisphaerica|type=transcript|length=589bp
GTTTTAAATATGCCAACATTTCGACTGGACTTTGAGCAAGTTAACTTAAG
GCAACAGTACATGCTTAGAACTTTGGCGATGAGGGATACAAGGCATACAC
CTAGGAACTTtctttcaaaactatttttagtacctgtttgaaatattttc
tgtaTCAGGAACCCAAATATGAGATCGATGCATTTCATTGGTACGAGCTT
TGAGAAAATAAGTTTCAAATAGTCAGATTCAGCATGAAAAACAAACACAt
cattcataagcatataatattCCAGCTGTTGATATATAAAGTTCTTTTCC
ATTAGTAACTTCTTTTACTAGTTCCAAATATGGTCTTCTGTTTCAATTGC
AATTTGCATTGGAGCTAAAAAGGCATGTTTTGGCATTTTGTTCTGCTGTA
AGCCTTGAATTAGGAATGCACAGACATATCAATCCTTTATGCGAAACTCC
AGCAGCTTTGTTGCTATTGATTTCATTATCTTGGTAGCATCTCTCAAAAC
AGTCCTTTGCACTTTGAACATCATTgaattttttagtaaattgTGATGAT
CCTCGATCTTGTATCCAACTTGAGCATTCACATTGGCCT
Run BLAST on NCBI

transcript from alignment at sc0000019:613759..614347

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002392 ID=TCONS_00002392|Name=TCONS_00002392|organism=Clytia hemisphaerica|type=transcript|length=589bp|location=Sequence derived from alignment at sc0000019:613759..614347 (Clytia hemisphaerica)
AGGCCAATGTGAATGCTCAAGTTGGATACAAGATCGAGGATCATCAcaat
ttactaaaaaattcAATGATGTTCAAAGTGCAAAGGACTGTTTTGAGAGA
TGCTACCAAGATAATGAAATCAATAGCAACAAAGCTGCTGGAGTTTCGCA
TAAAGGATTGATATGTCTGTGCATTCCTAATTCAAGGCTTACAGCAGAAC
AAAATGCCAAAACATGCCTTTTTAGCTCCAATGCAAATTGCAATTGAAAC
AGAAGACCATATTTGGAACTAGTAAAAGAAGTTACTAATGGAAAAGAACT
TTATATATCAACAGCTGGaatattatatgcttatgaatgaTGTGTTTGTT
TTTCATGCTGAATCTGACTATTTGAAACTTATTTTCTCAAAGCTCGTACC
AATGAAATGCATCGATCTCATATTTGGGTTCCTGAtacagaaaatatttc
aaacaggtactaaaaatagttttgaaagaAAGTTCCTAGGTGTATGCCTT
GTATCCCTCATCGCCAAAGTTCTAAGCATGTACTGTTGCCTTAAGTTAAC
TTGCTCAAAGTCCAGTCGAAATGTTGGCATATTTAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001279XLOC_001279Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002392-exon-sc0000019-1491911889:613759..614347TCONS_00002392-exon-sc0000019-1491911889:613759..614347Clytia hemisphaericaexon
TCONS_00002392-exon-sc0000019-1510915933:613759..614347TCONS_00002392-exon-sc0000019-1510915933:613759..614347Clytia hemisphaericaexon
TCONS_00002392-exon-sc0000019-1575043694:613759..614347TCONS_00002392-exon-sc0000019-1575043694:613759..614347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:613759..614347 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.560175	0.637302	0.21142	0	0	0	0	0	0.0786748	0	0.189177	0	0	0	0	0	0.0700869	0.502857	0	0.103854	1.80536	2.64178	1.28457	1.75179	0.801913	0.715688	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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