|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002398 ID=TCONS_00002398|Name=TCONS_00002398|organism=Clytia hemisphaerica|type=transcript|length=784bp
ctaAGAGTTTTATTTCTCGCAAATTTTTGCCCAtcttaaattaaaaaatg
gtcagataatttttctaaaatttttctaaaaaatcttcgtttttctcact
ttttacaACCTTTGAATGTACTTTCTCTGatttcaacccttacagtgcac
ttcgGGAACTCTCAAAAAACGCCATAATCGAGTCTAGAGTGCTGAGTCAG
TCGTTTACATTGAGTTCCCCAGGGTGTAATTTATATTTTCCTATTCATTA
TCAGTTTCAAAACCATCATTGATTGCTGAATCAACAGTGTCTTCCTTTAC
GTTCAATATGTAATCATCGCTTTCCTTTTCCAATGTCATCCGTTCCCCTG
GCGGTGAAAATTCCTTATTTTCCGTTGATGACGAATCATCAATTTCCATA
TTTCCCTTATTGCTTTTATCACAATCATCATCGTCGAGTTTATTTCGAAT
TGTTAAAGATTCATCACCGCTGTCGTTTTCTCGTTTCAACGAATCATTCC
CAGAATCCTTCACGTCCTTTGTGTTCTCTCTCATTTCTTTACCAGTTTCA
GCTTCCAAAACGTTTGCCTTGGCATCTTCACCAATTATCTTATTCTTAGC
ATTTGTCTCACTAATGATGGTTTCATTAGATTCCTCGGTTGGTTTGTCAC
TATCCTCCAATACTGGTTCAGCTGATTGAAATTGACTCCATTCAAAGTCT
TCGATAGTcggtttcaatttttcattttcttgcgAATCGTTGGCAGATAT
TTCATTTGCTTGGATACCAAACTTAAATTCTATT Run BLAST on NCBI protein sequence of TCONS_00002398-protein >TCONS_00002398-protein ID=TCONS_00002398-protein|Name=TCONS_00002398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
IEFKFGIQANEISANDSQENEKLKPTIEDFEWSQFQSAEPVLEDSDKPTE
ESNETIISETNAKNKIIGEDAKANVLEAETGKEMRENTKDVKDSGNDSLK
RENDSGDESLTIRNKLDDDDCDKSNKGNMEIDDSSSTENKEFSPPGERMT
LEKESDDYILNVKEDTVDSAINDGFETDNE Run BLAST on NCBI transcript from alignment at sc0000019:714708..715491 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002398 ID=TCONS_00002398|Name=TCONS_00002398|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at sc0000019:714708..715491 (Clytia hemisphaerica)
AATAGAATTTAAGTTTGGTATCCAAGCAAATGAAATATCTGCCAACGATT
cgcaagaaaatgaaaaattgaaaccgACTATCGAAGACTTTGAATGGAGT
CAATTTCAATCAGCTGAACCAGTATTGGAGGATAGTGACAAACCAACCGA
GGAATCTAATGAAACCATCATTAGTGAGACAAATGCTAAGAATAAGATAA
TTGGTGAAGATGCCAAGGCAAACGTTTTGGAAGCTGAAACTGGTAAAGAA
ATGAGAGAGAACACAAAGGACGTGAAGGATTCTGGGAATGATTCGTTGAA
ACGAGAAAACGACAGCGGTGATGAATCTTTAACAATTCGAAATAAACTCG
ACGATGATGATTGTGATAAAAGCAATAAGGGAAATATGGAAATTGATGAT
TCGTCATCAACGGAAAATAAGGAATTTTCACCGCCAGGGGAACGGATGAC
ATTGGAAAAGGAAAGCGATGATTACATATTGAACGTAAAGGAAGACACTG
TTGATTCAGCAATCAATGATGGTTTTGAAACTGATAATGAATAGGAAAAT
ATAAATTACACCCTGGGGAACTCAATGTAAACGACTGACTCAGCACTCTA
GACTCGATTATGGCGTTTTTTGAGAGTTCCcgaagtgcactgtaagggtt
gaaatCAGAGAAAGTACATTCAAAGGTtgtaaaaagtgagaaaaacgaag
attttttagaaaaattttagaaaaattatctgaccattttttaatttaag
aTGGGCAAAAATTTGCGAGAAATAAAACTCTtag Coding sequence (CDS) from alignment at sc0000019:714708..715491 >TCONS_00002398 ID=TCONS_00002398|Name=TCONS_00002398|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000019:714708..715491 (Clytia hemisphaerica)
ATAGAATTTAAGTTTGGTATCCAAGCAAATGAAATATCTGCCAACGATTc
gcaagaaaatgaaaaattgaaaccgACTATCGAAGACTTTGAATGGAGTC
AATTTCAATCAGCTGAACCAGTATTGGAGGATAGTGACAAACCAACCGAG
GAATCTAATGAAACCATCATTAGTGAGACAAATGCTAAGAATAAGATAAT
TGGTGAAGATGCCAAGGCAAACGTTTTGGAAGCTGAAACTGGTAAAGAAA
TGAGAGAGAACACAAAGGACGTGAAGGATTCTGGGAATGATTCGTTGAAA
CGAGAAAACGACAGCGGTGATGAATCTTTAACAATTCGAAATAAACTCGA
CGATGATGATTGTGATAAAAGCAATAAGGGAAATATGGAAATTGATGATT
CGTCATCAACGGAAAATAAGGAATTTTCACCGCCAGGGGAACGGATGACA
TTGGAAAAGGAAAGCGATGATTACATATTGAACGTAAAGGAAGACACTGT
TGATTCAGCAATCAATGATGGTTTTGAAACTGATAATGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002398-exon-sc0000019-1491911889:714708..715491 | TCONS_00002398-exon-sc0000019-1491911889:714708..715491 | Clytia hemisphaerica | exon |
| TCONS_00002398-exon-sc0000019-1510915933:714708..715491 | TCONS_00002398-exon-sc0000019-1510915933:714708..715491 | Clytia hemisphaerica | exon |
| TCONS_00002398-exon-sc0000019-1575043694:714708..715491 | TCONS_00002398-exon-sc0000019-1575043694:714708..715491 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:714708..715491 . |
Blast
The following BLAST results are available for this feature:
|
