TCONS_00002398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002398
Unique NameTCONS_00002398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002398 ID=TCONS_00002398|Name=TCONS_00002398|organism=Clytia hemisphaerica|type=transcript|length=784bp
ctaAGAGTTTTATTTCTCGCAAATTTTTGCCCAtcttaaattaaaaaatg
gtcagataatttttctaaaatttttctaaaaaatcttcgtttttctcact
ttttacaACCTTTGAATGTACTTTCTCTGatttcaacccttacagtgcac
ttcgGGAACTCTCAAAAAACGCCATAATCGAGTCTAGAGTGCTGAGTCAG
TCGTTTACATTGAGTTCCCCAGGGTGTAATTTATATTTTCCTATTCATTA
TCAGTTTCAAAACCATCATTGATTGCTGAATCAACAGTGTCTTCCTTTAC
GTTCAATATGTAATCATCGCTTTCCTTTTCCAATGTCATCCGTTCCCCTG
GCGGTGAAAATTCCTTATTTTCCGTTGATGACGAATCATCAATTTCCATA
TTTCCCTTATTGCTTTTATCACAATCATCATCGTCGAGTTTATTTCGAAT
TGTTAAAGATTCATCACCGCTGTCGTTTTCTCGTTTCAACGAATCATTCC
CAGAATCCTTCACGTCCTTTGTGTTCTCTCTCATTTCTTTACCAGTTTCA
GCTTCCAAAACGTTTGCCTTGGCATCTTCACCAATTATCTTATTCTTAGC
ATTTGTCTCACTAATGATGGTTTCATTAGATTCCTCGGTTGGTTTGTCAC
TATCCTCCAATACTGGTTCAGCTGATTGAAATTGACTCCATTCAAAGTCT
TCGATAGTcggtttcaatttttcattttcttgcgAATCGTTGGCAGATAT
TTCATTTGCTTGGATACCAAACTTAAATTCTATT
Run BLAST on NCBI

protein sequence of TCONS_00002398-protein

>TCONS_00002398-protein ID=TCONS_00002398-protein|Name=TCONS_00002398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
IEFKFGIQANEISANDSQENEKLKPTIEDFEWSQFQSAEPVLEDSDKPTE
ESNETIISETNAKNKIIGEDAKANVLEAETGKEMRENTKDVKDSGNDSLK
RENDSGDESLTIRNKLDDDDCDKSNKGNMEIDDSSSTENKEFSPPGERMT
LEKESDDYILNVKEDTVDSAINDGFETDNE
Run BLAST on NCBI

transcript from alignment at sc0000019:714708..715491

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002398 ID=TCONS_00002398|Name=TCONS_00002398|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at sc0000019:714708..715491 (Clytia hemisphaerica)
AATAGAATTTAAGTTTGGTATCCAAGCAAATGAAATATCTGCCAACGATT
cgcaagaaaatgaaaaattgaaaccgACTATCGAAGACTTTGAATGGAGT
CAATTTCAATCAGCTGAACCAGTATTGGAGGATAGTGACAAACCAACCGA
GGAATCTAATGAAACCATCATTAGTGAGACAAATGCTAAGAATAAGATAA
TTGGTGAAGATGCCAAGGCAAACGTTTTGGAAGCTGAAACTGGTAAAGAA
ATGAGAGAGAACACAAAGGACGTGAAGGATTCTGGGAATGATTCGTTGAA
ACGAGAAAACGACAGCGGTGATGAATCTTTAACAATTCGAAATAAACTCG
ACGATGATGATTGTGATAAAAGCAATAAGGGAAATATGGAAATTGATGAT
TCGTCATCAACGGAAAATAAGGAATTTTCACCGCCAGGGGAACGGATGAC
ATTGGAAAAGGAAAGCGATGATTACATATTGAACGTAAAGGAAGACACTG
TTGATTCAGCAATCAATGATGGTTTTGAAACTGATAATGAATAGGAAAAT
ATAAATTACACCCTGGGGAACTCAATGTAAACGACTGACTCAGCACTCTA
GACTCGATTATGGCGTTTTTTGAGAGTTCCcgaagtgcactgtaagggtt
gaaatCAGAGAAAGTACATTCAAAGGTtgtaaaaagtgagaaaaacgaag
attttttagaaaaattttagaaaaattatctgaccattttttaatttaag
aTGGGCAAAAATTTGCGAGAAATAAAACTCTtag

Coding sequence (CDS) from alignment at sc0000019:714708..715491

>TCONS_00002398 ID=TCONS_00002398|Name=TCONS_00002398|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000019:714708..715491 (Clytia hemisphaerica)
ATAGAATTTAAGTTTGGTATCCAAGCAAATGAAATATCTGCCAACGATTc
gcaagaaaatgaaaaattgaaaccgACTATCGAAGACTTTGAATGGAGTC
AATTTCAATCAGCTGAACCAGTATTGGAGGATAGTGACAAACCAACCGAG
GAATCTAATGAAACCATCATTAGTGAGACAAATGCTAAGAATAAGATAAT
TGGTGAAGATGCCAAGGCAAACGTTTTGGAAGCTGAAACTGGTAAAGAAA
TGAGAGAGAACACAAAGGACGTGAAGGATTCTGGGAATGATTCGTTGAAA
CGAGAAAACGACAGCGGTGATGAATCTTTAACAATTCGAAATAAACTCGA
CGATGATGATTGTGATAAAAGCAATAAGGGAAATATGGAAATTGATGATT
CGTCATCAACGGAAAATAAGGAATTTTCACCGCCAGGGGAACGGATGACA
TTGGAAAAGGAAAGCGATGATTACATATTGAACGTAAAGGAAGACACTGT
TGATTCAGCAATCAATGATGGTTTTGAAACTGATAATGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001285XLOC_001285Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002398-proteinTCONS_00002398-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002398-exon-sc0000019-1491911889:714708..715491TCONS_00002398-exon-sc0000019-1491911889:714708..715491Clytia hemisphaericaexon
TCONS_00002398-exon-sc0000019-1510915933:714708..715491TCONS_00002398-exon-sc0000019-1510915933:714708..715491Clytia hemisphaericaexon
TCONS_00002398-exon-sc0000019-1575043694:714708..715491TCONS_00002398-exon-sc0000019-1575043694:714708..715491Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:714708..715491 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.166413	0.263003	0.0793256	0.0742637	0.0519938	0	0	0.0410921	0.32828	0.127846	25.9263	2.36871	0	0.0474747	0	0	0	0	0	0	0.26498	0.118244	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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