TCONS_00002424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002424
Unique NameTCONS_00002424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002424 ID=TCONS_00002424|Name=TCONS_00002424|organism=Clytia hemisphaerica|type=transcript|length=465bp
AGGGGAGATTACCATAAACCAAATTCTTGATCAATGCATTAGCTGTCGGA
TACCATGGATCTGATCGATAAACTTTAACATTACCAAAAAATCTGGCTTT
ATCATTAATCACTGAATGGACACTTTCTCCACCAATTTTGATTTCAAGTC
TGAATTTCCCATCACTCAATTGATGTTGTTTAATTTCAACTTTTGTATAC
TGGTTCAAAATCAGAGGCTCAGAATTAAAGCAATAATTTCTGTCACTATT
CACCGGATTACAAATATGAAGTTTCCGGCTTTTTCCTTTGAAGAATATTG
CAGGAACACGGCTGCCATGGGTGTTGATATTTGTACCGTCAGCCGTAAAG
TGAATAACATTTGACCAATAAGGGATGTTTCCGTAAGGTCGAATGTCTAA
AGAGACATACCACGCTGGTGCTAAAAGCGAGATTTCATCTATTTGAAGTC
CTCGAGATAGACGAA
Run BLAST on NCBI

transcript from alignment at sc0000020:211480..212003+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002424 ID=TCONS_00002424|Name=TCONS_00002424|organism=Clytia hemisphaerica|type=transcript|length=524bp|location=Sequence derived from alignment at sc0000020:211480..212003+ (Clytia hemisphaerica)
AGGGGAGATTACCATAAACCAAATTCTTGATCAATGCATTAGCTGTCGGA
TACCATGGATCTGATCGATAAACTTTAACATTACCAAAAAATCTGGCTTT
ATCATTAATCACTGAATGGACACTTTCTCCACCAATTTTGATTTCAAGTC
TGAATTTCCCATCACTCAATTGATGTTGTTTAATTTCAACTTTTGTATAC
TGGTTCAAAATCAGAGGCTCAGAATTAAAGCAATAATTTCTGTCACTATT
CACCGGATTACAAATATGAAGTTTCCGGCTTTTTCCTTTGAAGAATATTG
CAGGAACACGGCTGCCATGGGTGTTGATATTTGTACCGTCAGCCGTAAAG
TGAATAACATTTGACCAATAAGGGATATTTCCGTAAGGTCGAATGTCTAA
ANCGTAAAGTGAATAACATTTGACCAATAAGGGATGTTTCCGTAAGGTCG
AATGTCTAAAGAGACATACCACGCTGGTGCTAAAAGCGAGATTTCATCTA
TTTGAAGTCCTCGAGATAGACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001304XLOC_001304Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002424-exon-sc0000020-1491911889:211480..211837TCONS_00002424-exon-sc0000020-1491911889:211480..211837Clytia hemisphaericaexon
TCONS_00002424-exon-sc0000020-1510915933:211480..211837TCONS_00002424-exon-sc0000020-1510915933:211480..211837Clytia hemisphaericaexon
TCONS_00002424-exon-sc0000020-1575043694:211480..211837TCONS_00002424-exon-sc0000020-1575043694:211480..211837Clytia hemisphaericaexon
TCONS_00002424-exon-sc0000020-1491911889:211897..212003TCONS_00002424-exon-sc0000020-1491911889:211897..212003Clytia hemisphaericaexon
TCONS_00002424-exon-sc0000020-1510915933:211897..212003TCONS_00002424-exon-sc0000020-1510915933:211897..212003Clytia hemisphaericaexon
TCONS_00002424-exon-sc0000020-1575043694:211897..212003TCONS_00002424-exon-sc0000020-1575043694:211897..212003Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:211480..212003 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.9609	17.9753	0.725438	6.58163	10.1848	5.60157	3.75295	0	0	4.20637e-08	0	0.225079	0	0	0	0.0362465	2.71234	0.671418	0	0	57.8771	52.6924	6.013	6.73367	0	4.39093	13.1714	4.43678	0	2.09078
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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