|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002452 ID=TCONS_00002452|Name=TCONS_00002452|organism=Clytia hemisphaerica|type=transcript|length=1021bp
CTTTCTAAATTTTCTCTCCATATTAATCATTCACATTTCTCTTATATTTT
TACAGTGtgtaaataaatcaaaaattaaataaagttAAATCGATACAATA
CAAAATAATTAACATGGATTTGATGCATTTTGTTAAAACAAGGACAGCCA
GTCTTCTTACAGAACTTGACAaaaaattaCTTGTTGTATTAAGAGATGGA
CGAACTCTCATTGGTGAACTTATGTCCGTAGATCAATTTGCTAATCTGGT
TCTGAAAGACACCATTGAGCGCATTCACGTCGGTCAGGAATACGGAGACA
TTGAACGTGGTGTGTTCATCGTACGTGGTGAAAACGTCGTCCTACTGGGA
GAAGTTGATACAGAGAAAGAGGAAAGTAGCACATTACGAAAAGTCAGCAT
GGAAGATATCTTAGAAGCACAACGTAAAGATTTACTTGAGAAAGAAGAGG
TGGAACgtaagaaaaacattttgagaCATGAACGTGGTTTACCTCCTCAC
ATGCCTGATATGGGACTCGACGATTTTGCTTAAAACACTCTAAAAGTAGT
GCACCTCCAAAATCACACAGTTGCGTTATCTTGACTTATGACCAAGCTCA
GATACGCCCTGTACGCGCACCAGAACCACCCTTTGAATGAATCGTCCACC
ACACCGCCCCTGAAGGCTTGATCAATGGCGGAACCACCCAGGTATCGATA
CTATTGTGTTtcgtcgttgttgttgttgtttttgtttgttatcTATCTCG
CGTTGTGTTATTGTTATCAAATGGAAGGGACATTTGGTAGCTCGCACTGA
TGTTCTTACCAGCATTTTGACCAATCCTTATATCAGCGCGGTATGAGTGT
CACGTTGTTTGAAAACTGGGCAGACACATATAATATAATAGCAGTTGATG
CTGATGgtcatttttttacaattaGAGAATTTCTAACTAATACTAAATTA
AACATCGtacaatttttattaaaaaaagacataatTTATGAGCTGAAAAA
TTACAAAGGACTCGCTTAAAA Run BLAST on NCBI protein sequence of TCONS_00002452-protein >TCONS_00002452-protein ID=TCONS_00002452-protein|Name=TCONS_00002452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MDLMHFVKTRTASLLTELDKKLLVVLRDGRTLIGELMSVDQFANLVLKDT
IERIHVGQEYGDIERGVFIVRGENVVLLGEVDTEKEESSTLRKVSMEDIL
EAQRKDLLEKEEVERKKNILRHERGLPPHMPDMGLDDFA Run BLAST on NCBI transcript from alignment at sc0000020:492916..504175+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002452 ID=TCONS_00002452|Name=TCONS_00002452|organism=Clytia hemisphaerica|type=transcript|length=11260bp|location=Sequence derived from alignment at sc0000020:492916..504175+ (Clytia hemisphaerica)
CTTTCTAAATTTTCTCTCCATATTAATCATTCACATTTCTCTTATATTTT
TACAGTGtgtaaataaatcaaaaattaaataaagttAAATCGATACAATA
CAAAATAATTAACATGGATTTGATGCATTTTGTTAAAACAAGGACAGCCA
GTCTTCTTACAGAACTTGACAGTAAGTATCGtcattagcgaggttaagta
aatcggcaAAATCACAACGACGAACGAAAacttaacaggctagtgagttt
caaccaatcaaatttcgtattttcactggccaattacatttttcgtccgt
cgtcgtaattatcctggtatgcttaacctcagtattgttctattcagaaa
aaaattgtaccttCTTTGTTGATGCGgtcttttttgggaaaggtgACCCG
CCTGGATTTATCTTCCTTTTACTAACCACTCTGAATTTTCCACCTCATTT
TGCtgatttttacactcgaaaaaccagACCCCCTGGATTTATATTTTCCA
GACTTCCCTGAATGTCACACCTTCTCAATATAGGGGGGTACagacttttt
ctggaaaagcacatttttaaaggtttccAATGTTTCTTTTCTTCTCTGAT
GAAGCTCTTGAGTACCCTGAGAACACAATTCAGTCCCAAGGCACCCTTCT
AAGTAAGATACTCGTAAGTAATAAATTTTTCGCTTTAAAAAATCGATTTA
AAACTCCCTGACTTAAATTCATTGTAACAATTTTTTCTATGATATTGATT
TATGACACTAAAATTATATATAAACCTAAAACATATTATACCATTTACCA
aggatcccatgtaaatttagCACTGCGTGTAACAaagttctttttcttct
ttttcatagaaaaattaCTTGTTGTATTAAGAGATGGACGAACTCTCATT
GGTGAACTTATGTCCGTAGATCAATTTGGTAAGAACCATTTATGGACCAG
ATATTTAGCTACCAAAAAATCGTTTCCTTTCAAAATCAACGGAAAAATTG
AGAAGATTCACTTAAGGTTGGCAATAAGACCCTGAACTAACCGATCAATG
GGCTgtcatttttaactttttactgAGACCCGTTTTCACTTTATTTCCAC
ATCAATATTTTTATGATAATCGATCAACATTGGTTTCAATAGTTTCTGAA
TGTCTTTTGAGAATTATAAGTCCAATTCCTAGACAAAATATTACTGATTT
TTGTTCCTTTTCTGCCTTTCTTGTTCGTCAGTTTTTGTGTGTTTACTGCA
CATAATAATGACGTTTTTCCTAAGTTTGTCTATCTTGTACCCTTGAAGTT
GTAGTTGATATTCTTCCTTTTGATGTATCCACCTGATTGTTCCTCGGTGA
GGTTCTGTCTTTTGCATTTGGAAGCCATCTTCTAATATATCTCTTGTATG
TAGCCTGATAGTCTTTATCCTTGTAAGCATAAAGAAGAGGGTTAACACAC
GAGCTTGCCAGAGCCATGTAGATAGTGAATAACATGTAGTAGACTATAAT
GCTCCTGGGTACGAGGTCAGGTCTACTGCCGTTCAAAGGTAAGAGAAACG
CAAGACCAAACGAGGGAGCTGTGCTTACCAGATAACAGAATATCAACAAT
AGGACTTTCTTAACAAGCCTGGTTTGGTGTTGCTGTATCTGGTCAGAGCT
TGATACATTAGTCGCAACACGCCTTCGGCTTTGTCTAACAGCTCTATATA
TCATGAAGTAGCTAACGCTCAGGAGAACTGTCGAGCCAACGATGAATATC
GGGCCACCTATGTAATAAACTGTCTTCACCAACACGCATACAAGAGTACA
GACAAGCATTATGAGCCAAAAGGATACAATAATTAAGGCCACTTTCCgtt
cattcaaaattttctcatatttttgtGGCTTTATGATGTGTATGTATCTT
TCGTAAGCAGCAAATATAATCGAACAGGCTGAACAACTGGCTATCCAAAG
ACTTGCGAAATCAGAAGCTTGCATAACCCAAAAGGCAATCTGTGGAGAGT
CTGTTATTACTTGATTGACGTTAATCCTTCCAATCGCCAATGGAAAACAT
ATGAAACCAACGAGACAGTCACTGAGTACCAATGAAGACAGTATTCTATA
AGACGTAGAGCTTTTATGCGTTTGTTTGAGCACAAACAAACAAAAGGTAT
TTCCGAAAGCTGCAACCAGAGCTGAGATTCCAAAAAGTACAGAAGCACAA
ATTGCCACCTTTGGATtgatatctaaaaatatatcACCCATTTGTGAGAT
AGGACCAAAATCGCCAGGATCTGTCACCTTCGGTCATGCTCGATTTTCTC
CATCCCGAAATGGATCATGTTTTTATATTGCAGCTCAACTTTGACCATTG
ATATAACTCCTCGCGATTGGTTCTGATCGAAATCAGTGGTCTTTACTAAG
CTTTCCAACGTTttaaattggaaacattaactGCTAAAAACAGGAAACCC
ATTACGACGTTATATGATACACGAAACGATTTCCGTCCGGGTTCTAACGA
GAATTCATTACGAAATTGCATATCAGACAAATGATATAAAAGGACTCAAA
AATATGACGGAAGGAggggagaaaaaaaaagaaaaagagaacgGTCGTGA
AGTAGAGCGCAACAAGATCTTGCAACTACATTTGACGTCGAATGGCTAAA
GTTTAAAAGGAATTACGCGATCATATATCACGTATCTGAAAAATAAAGAC
TAATATACTATAGTCCAGACAATACGGGGCATGAGGTTTTCAGGCTAACC
AGGGGGCAATAACTTTTCAGAGGGGGTGTTTCGAGGGTAAGAGGTAATCG
TTTTTGGAGCCGATTTGCCTGGGGTAGGGTACTGAATTCAAGATATCNTC
AGAGGGGGTGTTTCGAGGGTAAGTGGCAATCGTTTTTGGAGCCGATTTGC
CTGGGGTAGGGTACTGAATTTCAAGATATTTCATGAACTACATATCAAAA
CCTATTTAAACTTTGCAGGGTTTTAGATAAAGCATCAAAAATtgtgtgtg
aaaaatttcaagatggtagcaggaataatgtgtattttacagacccgaat
atcaaaattttgtgaaaaaatctaattaaaaaaaaataaaacttttaaat
tttacacAGGGCCAAATTCTTCCATGAAATAGATGTTAATGCCTTCATTG
CTCGTAGTCGGTATATTTGTAGCATTGTGGTaagttttatgaattttaga
cgactatttttttatttacagtccatttattttgaaaaattcggtcaaaa
ctgccccaaaatacaagaaaattttttgacgtttttctttATAGCTCAGC
AAAAAGCCAAGTAAACCTCATTAAATTTCACAGATGTTAGTTAAGGCCAG
AAACATTCAAGTGAGGTTTCGAGATGGTGGGatgaaaaatgtgtatttta
cagaccagaatatttcgaatttttcataaaaatcaagATCTCTTTTTTGT
TGATAACATCTATAACTAACAGTTGTTAAGTGcctttggtattttacaga
ccacttTTCTGGCTGcttttgatttaaataaaattgactCAATTTGAAGT
ATCTCACTTGTCATCAAGTCATGTAAATCAAAGTTGaaatgcttttaaaa
ttttcataatgtgTCGAAATGCGCTCCTGCTCAATTTAAATCAGATGATG
ACACGATTAGATGGAAAAATGTAATTTACAGACGTTGCACGAAACCCCGC
TACGTTGACTTGTGGAAGCAGACAAACAAATATATACCTTAAACATTTTA
TTTATCtgattggtattttacagactaagCCTTCCCTTTTTTAAGTATAT
CTATATAAAAGTAGCTGAAagtgaataaattttaaaagtatTATGCTGCA
CTATCAAACAAGACTGACACAGTTAACCTGTGTTTACATTGTAGCCGAAA
AGTCTTAATAACGACtcaaactttaaaggttttatttttacataagtgtt
cccatttcatatcagacacatattttataacgggacagtgtcttgctatt
gttatattatgctgatataagcaaagaatgtttttctattcctctttctg
accaatcttgctccacatccgtgtccaTCCAATGGgagaaagcttgtgaa
ttaaaattgatgagtaagcaaacgatatctctcttattttaaaaagaaaa
cctttaagtttAATAATCTTGATAACTGTTAATCTTGTATTAGTACTAGT
AGGACAACCTAGATTAGTAGGATACATGCAACATTCAAGGTAGCGTACAG
TACCTAATCTAAATTCCAGATCAAAGCCATCGGTATCAGCACGTTAAGTT
AAGCTTGACATTACTTTCTAGGCTTTAAAACCTTTTCCTAGTTCTAAATC
AATACAGTTTTTCGTCGATATCTTTAAGACACTACTAATGAAGATTTTGC
TGTATCAACTTAAGGAGAGTATGGTGGTATCCGTAACCCAGAAAGATCAG
TAAAATTTGTACTTGGGGCCTTATACTGCATCAgatgagaaaattttttc
tccgAACAGACCCTGGTTGATCCACTAAGTTGTACGAGAGATCACATTCG
CAACATCACTTTAGATTAGAGGGTTGGAATGGCGATCTGATACGAGAGAT
TTATCTGGGAACTTGTcgaaaaaatcctttttttatgctggtttttaaaa
ggttttcaatttttagcataagaagaaagaagaaaatagcTCCAGTCTAC
GCTAGATTTTGCGGTTGATTCTCACTCAGGTCTTTTTATTCGAATCAATT
TAACCAGGACGGGATGGGATGTTACTTACACTAAACTGTGTAATGGCTAC
CTCCAACTTTTATACGACCACCTTAGACCTACATTGCTGAATCACATTAA
CTGATGACTACTATGCATCTGATCGTCGAACTCCTTCAGACAACGCTGAG
ATGTGTTTTTTTCTAAATGATTATCTTCCCAGGCGAGCGATGAGGAGAAT
TCGGTAGTAGCGGTCATGGCGTTAACCTGTACTATATGACTCACCCCTAC
AAACCAAACCAACTGAGCTAATAACCATTAAGCTAACCATAGCCACCAAG
TCTTAAAATACCCGTTAAAAGCAAGTGATTGTCAATCCCATTGGATACTT
TTCTTAACCTTATTCCCACAGATTCAATGGGTCGTTGAGACAGGGATCTT
CTAATGATCAAATCTCAAATGATCTTCAATTTTGGTTCTTTAAAACCATT
CAACTTGCATTGAACACGATTGTCTCttgtttccctgtaaaaatatTAGT
GAGTACCAATATTGATAGCGCAACGAGTGTTAGAGATAGCGAGCGCTTTT
AGCCTAAATTTGCTTGCCAAAAATATAAAGTGCTTTAGGGTACGAGCATC
AACTGCTCGGGATATGTATTTTTGGTAAGCTTGATGAAGTCAAATGTATG
CTTACGATTATCATTTCactatttaaatttttattgatgGAAAATGCCGT
ATATATAATGGTCTATAAATTATtacatttttccaatttcatcTTATTCA
AAATAAACAGAAACATGACAACTTTAAAAGCGTTTCAACTTTGATTTACA
TGACTTGATGACAATAAGTGagatatttcaaattgatttaattttattta
aatcaaaagtAGCCAGAAaagtggtctgtaaaataccaaaggCACTTAAC
AACTGTTAAGTCAGACTTCTAAACTAAGAATGTATATATAGTTATAAATA
TTATCAACAAAAATGCTTCAATCGATTGAAAATATGAGTCTCAGACAACG
TTTGAGTTGTCAAAACTAAAGAGAGATAGAtcttaatttttatgaaaaat
tcgaaatattCTGGTCtataaaatacacatttttcatCCCACCATCTCGA
AACTTCACTTGAATGTTTCTGGCcttaaaaactaacatctgtGAAATTTT
AATGAGGTTTACTTGGTTTTTTGCTGAGCTATaaagaaaaacgtcaaaaa
attttcttctatttttgggcagttttgaccgaatttttcaaaataaatgg
actgtaaatcaaaaaaaagtcgCCTAAAATCCATAAAACTTTCCACAATG
CTACAAATATACCGACTACGAGCAATGAAGGCATTAACATCTATTTCATG
GAAGAATTTGGCCCTgtgtaaaatttaaaagttttatttttttttttaat
tagagtttttcacaaaattttgatattcgggtctgtacaggtctgtaaaa
tacacattattcCNaaagttttatttttttttaattagattttttcacaa
aattttgatattcgggtctgtaaaatacacattattcctgctaccatctt
gaaatttttcacacacaATTTTTGATGCTTTATCTAAAACCCTGCAAAGT
TTAAATAGGTTTTGATATGTAGTTCATGAAATATCTTGAAATTCAGTACC
CTACCCCAGGCAAATCGGCTCCAAAAACGATTGCCACTTACCCTCGAAAC
ACCCCCTCTGAAAAGTTATTGCCCCCTGGTTAGCCTGAAAACCATTGTGA
TTCTCAAAACATAGATAAAAACccaaaaacagtttcaaaccTTTTTCGCC
GTCAAGGTGGTACCTCATGCCCCATATTGCCTGGACTACTAAGTaggttt
tatttgattttctaatcATCATTTTTGTAACAAGTTCTAATTCAAAATAA
TACTTCTTCAAAGTGGAGATCAATCTTGTCAGTTTCTTGTGTCTTGGCCT
TTCTATATCTATATATATAGATCGTGCGAAAGCTACCAGTGCGAACTCGG
ATTACGTGACACTTGAGGAAGAATTAAGGGCTTGACTATTCAGCGTTTTC
CCACACAGTATTTTACCCGTGTCACAATATTTAAGAAACGTTGCTTTGAT
TCTATTTTATCTTAAACTCTTGGCTTTTAAAGGCATATGATTATGTCatt
ataattttttgatgatatgATTTACTGGGAACGAAAATCTGGACGCCTAC
TATCATGtatttttggaaaacttttcCTAAAAGTACAATAATTACCTGAA
CTTATTTGACAATCGGTTTGTGTACTTAAAAAGAAATTGTTAATTTtcgg
taaaataaaatttttagtttgaattgAATATTAGATCTAAAAATCAGTTT
AATTGATTAATTTTCACACTCGACATAcgttatgaatttattttttaccC
ATAACTTTAATATCGGATTTGATAATTTCCCGTCTAAATTCAGAAATCAA
TCTAGTTGATTTATAATACGTACGCCCTAGTAATAAAGGGGTATCCAGGt
agtttgacattttttggCTCCTTAAAACCTTTGGtccaattattttccaa
agttaAGATATGAAGATGGTTGCAcagttcttacgttgaaattctattgt
tttcttgtAACTGTCAAAAACTTTATACTTGAAAATATATCGATTCCGGA
GGAAAGCAAAAAGATTCGCTGGTTTTGGTTAGGCCCTGTTTAAGGAGAAA
TAAACAGTCTGAAGATCTCAaatcatctgattatccctttaaatgaCATC
GTGTAGTATAAATCACCAATCATTTGCTTACAaggcatttttaaacaaaa
tgaaGAACCACTTTATTCCACTTCTGCGCCGCACGAgccaaaaatttgag
aaaattctaTCGTTAATTCTGCTTTTAAATCCTTAGTAAATTAAAGTTTT
ATTCTCGACACTCCGTCCAGATTCATCAGGTTGTTGCCACACACTCACAT
ACtataatattttaagaaaagCTAGTTCTTATTAAGAAAAGTagtaaaaa
cttaaaatttagggATCCTAGTAAACGCTAGAATTCATAATCCCTAAACA
TAACGGGTGTGCAATGGAcacccaaatattttttttatcaagtAAATTTC
GAATCTTTCCTGAAGATTTCATAGGTAGAAGTGATATGAAATGTGTACTT
TATACTTAAGATTAAGTTGTACTAGAAATTGAATTATATTGCGTAAAACA
CCACTCTTTTCAAGGAAAAGTGCAAATAAAGTTATAAATGACCATGCCAA
GGGCCCCCAGTTTTCTGCGCTAAACCTTTTTGTACATGCCATAAGTTACA
CGAGTAGGTTGTTAAAGATCAAACTACAGAATATTGATTTCATCTCAATA
GGAGATGACGAATCGTTTGGAATCGTTTTTTCTGTCTCGCATAGTCCTGT
TAAAAAAATGTAAGGATAGCCAACGAGATTTTGGAGGTCTGTTTCATTGT
TACTGGCCAAAAAATAACACCAACAAGGGATAGCTTAAAACGAGGAAACT
AATTTGATAATGAATTTcgtttttctatattttttacaGCTAATCTGGTT
CTGAAAGACACCATTGAGCGCATTCACGTCGGTCAGGAATACGGAGACAT
TGAACGTGGTGTGTTCATCGTACGTGGTGAAAACGTCGTCCTACTGGGAG
AAGTTGTAAGTAGTTTGATTAGTACCAGTGTCTTAAAAAGTACATAtaat
tgacgctctctaataggccatttcacagtcgcaaagcgtaatgggtaatc
aggatcAATGCGCGCTAATGACCACTTACTATTNcaaagcgtaatgggta
atcagaatcaatgcgcgctaatgacgacttactatcggtccaaagttttg
gaaaattttaaagatttttgcgtctaaccaacgggaaaccgttatcggcg
gcaatcagtcctgattacccatgaacCATTTCGATTGTGAAATGACCTAT
TTTATtggacgttctactattcgatgcgCTGCGTTactcgataatattga
aagtcaccttCAACAAGAAACCCTCATAGAAGATGCTCACAGAAGGATGG
TTCGATATGCTCCCTTATTCAATAATGAAAGTTACCGCCAATAAAAAACT
ATCagaaacgacgctcccttattcgaagaaaatccaatttccactgaaaa
tcgaattagagagcgtcaactgtatcttTAAAATTCGGGCTCTAACTGGA
ACATAAGCGTTTATTGTAGAATTAGCTATAAAAAAATCCAATCATAATCT
AACCATCGATAATCTATAAACAGTTAGTATGTTTCAAGTCCCATCTTTTG
AGCCTggtttgaaaatgtaaattttaccGGACAGTTGATGAAATTACCAG
GAAATTGAAATATGTTGGGGATTTTTCGACCACTTAAGACTAATTTGGGA
TTTCAGGGTCTCATTGACGGAGTTTAAAATCGAGTTTAAgatcatttttc
actttcaattggttatttttgattcactttTTATTTGATCTACCTCGGAT
GTCCTAAATATCAGATATtctgatggcggattggcggccgcccacgctta
ttaagctctaaaggagcaggccaatttcccatcggacaggaatgatagtc
ggcctttgatgtgccgcatccccagtcgggttcaaccaCCATTGCGCTTa
aaggtaaaaatattttggttggacccgccaatccccgaaaacgagggccg
GATTACCAGGCCTGCTGCttcaaaatccttgacgcggtcttgcGAAAttt
cgtaatctaaaccttccagatgttgaaaattttagagctttagcgtgtcg
gatgaaaatttctgcatctggtGCCAGATAAATGTACTATAAATTTGTAC
ATATCCgtttgttcgtctgttaccagcttttctggagttttttttagttt
ttttcgcGATTggctttgtattttttttttcagatttcttATTCTGCATT
TTGTTacttttgctgcctttttatcCTATTTTCTTACATTATCCTTCAGG
TAAGTTCATtaagcatgtagcttgttttaaaaatgaagtttttactGAAA
TTCTAATGTCGAAAATGGCCCAAAAATAGTCTTTTTAAATCGACTGCTGG
TTATGGGAACTTCTCTGCCAAATTTCTACTGGACTAATTGAGGATTAGGT
TGATTCCACTATCCTTTTACTTTCAAACTCTCGCCAAcctttatttgtaa
aaattgtTCGGTGGGACTAAATTCCTCAAAACTAACTGTATGGCCGAATA
AAGCTGACTCATGATTGCACGTTTATATCTGTCTCTAATTAAAAGTACTT
ATTCTTATGGTCAATAAATGTAGATGGTAGATGACTTTTAAATGGTATTT
GATATGTCTAGACCGCTGCGCAAAATAAATTGGCACTTCATCCCAAATTT
GCGAAACGATTTGCGTCAATTAGGTCGTTTAGGTGTTTTTTATGGTTTCT
CTTTATTATACTAACATTTCAAGGCCAACACGCAGTCTGACTTTCCAATA
TGAAACTACTTGATATATCTTCGGTGTATGAATCaaagacacttttttta
atGAAGGAACAATCGGAGTTTTTCCAGTTTTCTAAGAATTATATCGTCAA
CGCTCATATAGCTGAGCTTTGATTGACGTAATCTAATGCGTATCAAAACC
AGACCAAAACCCCCCTTTCTCCCTAAGTGGCAATGTTGAAGGACATTGGA
AAGGTCGGTGGGACGGCCTTTCCCACTCAAGATTGCCACTGGGGGAGAAA
GGGGGGTCTTTCCCATTTTCTTCCCAgcattttccagtgtttttctcaaa
cattgaAGTCCATGATTGTatcttttccttctttttttttaccagGATAC
AGAGAAAGAGGAAAGTAGCACATTACGAAAAGTCAGCATGGAAGATATCT
TAGAAGCACAACGTAAAGATTTACTTGAGAAAGAAGAGGTGGAACgtaag
aaaaacattttgagaCATGAACGTGGTTTACCTCCTCACATGCCTGATAT
GGGACTCGACGATTTTGCTTAAAACACTCTAAAAGTAGTGCACCTCCAAA
ATCACACAGTTGCGTTATCTTGACTTATGACCAAGCTCAGATACGCCCTG
TACGCGCACCAGAACCACCCTTTGAATGAATCGTCCACCACACCGCCCCT
GAAGGCTTGATCAATGGCGGAACCACCCAGGTATCGATACTATTGTGTTt
cgtcgttgttgttgttgtttttgtttgttatcTATCTCGCGTTGTGTTAT
TGTTATCAAATGGAAGGGACATTTGGTAGCTCGCACTGATGTTCTTACCA
GCATTTTGACCAATCCTTATATCAGCGCGGTATGAGTGTCACGTTGTTTG
AAAACTGGGCAGACACATATAATATAATAGCAGTTGATGCTGATGgtcat
ttttttacaattaGAGAATTTCTAACTAATACTAAATTAAACATCGtaca
atttttattaaaaaaagacataatTTATGAGCTGAAAAATTACAAAGGAC
TCGCTTAAAA Coding sequence (CDS) from alignment at sc0000020:492916..504175+ >TCONS_00002452 ID=TCONS_00002452|Name=TCONS_00002452|organism=Clytia hemisphaerica|type=CDS|length=1680bp|location=Sequence derived from alignment at sc0000020:492916..504175+ (Clytia hemisphaerica)
ATGGATTTGATGCATTTTGTTAAAACAAGGACAGCCAGTCTTCTTACAGA
ACTTGACAaaaaattaCTTGTTGTATTAAGAGATGGACGAACTCTCATTG
GTGAACTTATGTCCGTAGATCAATTTGCTAATCTGGTTCTGAAAGACACC
ATTGAGCGCATTCACGTCGGTCAGGAATACGGAGACATTGAACGTGGTGT
GTTCATCGTACGTGGTGAAAACGTCGTCCTACTGGGAGAAGTTGATACAG
AGAAAGAGGAAAGTAGCACATTACGAAAAGTCAGCATGGAAGATATCTTA
GAAGCACAACGTAAAGATTTACTTGAGAAAGAAGAGGTGGAACgtaagaa
aaacattttgagaCATGAACGTGGTTTACCTCCTCACATGCCTGATATGG
GACTCGACGATTTTGCTTAAATGGATTTGATGCATTTTGTTAAAACAAGG
ACAGCCAGTCTTCTTACAGAACTTGACAaaaaattaCTTGTTGTATTAAG
AGATGGACGAACTCTCATTGGTGAACTTATGTCCGTAGATCAATTTGCTA
ATCTGGTTCTGAAAGACACCATTGAGCGCATTCACGTCGGTCAGGAATAC
GGAGACATTGAACGTGGTGTGTTCATCGTACGTGGTGAAAACGTCGTCCT
ACTGGGAGAAGTTGATACAGAGAAAGAGGAAAGTAGCACATTACGAAAAG
TCAGCATGGAAGATATCTTAGAAGCACAACGTAAAGATTTACTTGAGAAA
GAAGAGGTGGAACgtaagaaaaacattttgagaCATGAACGTGGTTTACC
TCCTCACATGCCTGATATGGGACTCGACGATTTTGCTTAAATGGATTTGA
TGCATTTTGTTAAAACAAGGACAGCCAGTCTTCTTACAGAACTTGACAaa
aaattaCTTGTTGTATTAAGAGATGGACGAACTCTCATTGGTGAACTTAT
GTCCGTAGATCAATTTGCTAATCTGGTTCTGAAAGACACCATTGAGCGCA
TTCACGTCGGTCAGGAATACGGAGACATTGAACGTGGTGTGTTCATCGTA
CGTGGTGAAAACGTCGTCCTACTGGGAGAAGTTGATACAGAGAAAGAGGA
AAGTAGCACATTACGAAAAGTCAGCATGGAAGATATCTTAGAAGCACAAC
GTAAAGATTTACTTGAGAAAGAAGAGGTGGAACgtaagaaaaacattttg
agaCATGAACGTGGTTTACCTCCTCACATGCCTGATATGGGACTCGACGA
TTTTGCTTAAATGGATTTGATGCATTTTGTTAAAACAAGGACAGCCAGTC
TTCTTACAGAACTTGACAaaaaattaCTTGTTGTATTAAGAGATGGACGA
ACTCTCATTGGTGAACTTATGTCCGTAGATCAATTTGCTAATCTGGTTCT
GAAAGACACCATTGAGCGCATTCACGTCGGTCAGGAATACGGAGACATTG
AACGTGGTGTGTTCATCGTACGTGGTGAAAACGTCGTCCTACTGGGAGAA
GTTGATACAGAGAAAGAGGAAAGTAGCACATTACGAAAAGTCAGCATGGA
AGATATCTTAGAAGCACAACGTAAAGATTTACTTGAGAAAGAAGAGGTGG
AACgtaagaaaaacattttgagaCATGAACGTGGTTTACCTCCTCACATG
CCTGATATGGGACTCGACGATTTTGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002452-exon-sc0000020-1491911889:492916..493086 | TCONS_00002452-exon-sc0000020-1491911889:492916..493086 | Clytia hemisphaerica | exon |
| TCONS_00002452-exon-sc0000020-1510915933:492916..493086 | TCONS_00002452-exon-sc0000020-1510915933:492916..493086 | Clytia hemisphaerica | exon |
| TCONS_00002452-exon-sc0000020-1575043694:492916..493086 | TCONS_00002452-exon-sc0000020-1575043694:492916..493086 | Clytia hemisphaerica | exon |
| TCONS_00002452-exon-sc0000020-1491911889:493775..493843 | TCONS_00002452-exon-sc0000020-1491911889:493775..493843 | Clytia hemisphaerica | exon |
| TCONS_00002452-exon-sc0000020-1510915933:493775..493843 | TCONS_00002452-exon-sc0000020-1510915933:493775..493843 | Clytia hemisphaerica | exon |
| TCONS_00002452-exon-sc0000020-1575043694:493775..493843 | TCONS_00002452-exon-sc0000020-1575043694:493775..493843 | Clytia hemisphaerica | exon |
| TCONS_00002452-exon-sc0000020-1491911889:501205..501320 | TCONS_00002452-exon-sc0000020-1491911889:501205..501320 | Clytia hemisphaerica | exon |
| TCONS_00002452-exon-sc0000020-1510915933:501205..501320 | TCONS_00002452-exon-sc0000020-1510915933:501205..501320 | Clytia hemisphaerica | exon |
| TCONS_00002452-exon-sc0000020-1575043694:501205..501320 | TCONS_00002452-exon-sc0000020-1575043694:501205..501320 | Clytia hemisphaerica | exon |
| TCONS_00002452-exon-sc0000020-1491911889:503511..504175 | TCONS_00002452-exon-sc0000020-1491911889:503511..504175 | Clytia hemisphaerica | exon |
| TCONS_00002452-exon-sc0000020-1510915933:503511..504175 | TCONS_00002452-exon-sc0000020-1510915933:503511..504175 | Clytia hemisphaerica | exon |
| TCONS_00002452-exon-sc0000020-1575043694:503511..504175 | TCONS_00002452-exon-sc0000020-1575043694:503511..504175 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:492916..504175 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000956 | nuclear-transcribed mRNA catabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0000956 |
nuclear-transcribed mRNA catabolic process |
Blast
BLAST of TCONS_00002452 vs. Swiss-Prot (Human)
Match: LSM1 (U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1 PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 9.303e-40 Identity = 73/116 (62.93%), Postives = 92/116 (79.31%), Query Frame = 3
Query: 144 TASLLTELDKKLLVVLRDGRTLIGELMSVDQFANLVLKDTIERIHVGQEYGDIERGVFIVRGENVVLLGEVDTEKEESSTLRKVSMEDILEAQRKDLLEKEEVERKKNILRHERGL 491
TASL+ ++DKK LV+LRDGRTLIG L S+DQFANLVL T+ERIHVG++YGDI RG+F+VRGENVVLLGE+D EKE + L++VS+E+ILE QR + K E E+ K +RGL
Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDRGL 122
The following BLAST results are available for this feature:
|
