TCONS_00002457 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002457
Unique Name	TCONS_00002457
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1174

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000020:721309..724590+
coding sequence from alignment at sc0000020:721309..724590+

transcript sequence

>TCONS_00002457 ID=TCONS_00002457|Name=TCONS_00002457|organism=Clytia hemisphaerica|type=transcript|length=1174bp
cccccccccgtctattcgggagacaagagtacctTCATGACTCCTATTAC
TGTCAAACCCCAAAATTTACCTATTTAGTGACTTTCGAACATCAATAAAC
ATCTTGGTTCTTATAATAATgtaaattcttataagaaaattacCAAATAA
AATGATGCTGATGTTAGTGATTTAGCAACAAACTCATCTTAAAGCAAAGA
GCCCTCTAACGAGGTTGAACTAAAAAACGTCATTAGAGCATTTTTGTGGT
CAATCttttgatttaattattttataaaTGATGCGAAAAAAGGGTATAAA
ACAGGCATCTCAAAGACCTGGAAATTCATATCAAATCATTCTTCGTGCAG
CAGACACTAAGAGGACAAGAAGCGAAACAGCAAAGAagacaattttcatt
tttttgcaaaaccgATGCTGAATTGGTAAATTTCAACTGAAATTGAGTAA
ACAACCAACCCATCTTGGAAGATGATACAAAGGATAGCCATTGTGCTGTC
GCTATGGGCAGTTCTAGTTACCGCACAAAAATCAGGTACATTGGATATTG
GTGAGGTAACAACTGACAGTATCGACACGTCATTCACTTTTGACGTCGCG
CCGACCAAATTGACGGCCACTTTAGACCAAAAAGATCCATTTAAACGACT
GATCAATGCAGAGGAAATGACCATGACAGACACCACAAGGAAATTTGACA
ACCTCACACCGTTAACAGATTACACTGTGGAGATTGCCGGCTCTGATGGT
GCTGGTGCACAAGTCGCTTTGAAAAAAGATGTCCAAACCAAAGGTCCACC
AGTCAATAATGTTAAAGTCGATGCAACAGAAGCTACTGGTACCAAAGCTA
CAGTCACCTTCGATGAAGTCACTGGTCTCAAAGATATCCAAGATACTGCT
GATGTAGAAGTTGAAGCCTGTCCCGCTGATAAAACCAAATGCGTCACCCA
AACTGTCAAAGCCAAGGGAGGAACGACTGTTGAATTTGAAGGACTTACAC
CAGGCACTGAATATACTTATTCAGCTTACGTTAAGAACCCAGCTAATGAC
GCCAAAGGGCCACCTTCCGAAGGGAAATTTACAACTGCACCAGGAACTGG
TGAGTTTGATTCCTTTTTATGTTTCCTAATTGAATTGGAGCCTGATATTA
ACTATCTTTAGCAATAATGCGGAA

Run BLAST on NCBI

protein sequence of TCONS_00002457-protein

>TCONS_00002457-protein ID=TCONS_00002457-protein|Name=TCONS_00002457-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MIQRIAIVLSLWAVLVTAQKSGTLDIGEVTTDSIDTSFTFDVAPTKLTAT
LDQKDPFKRLINAEEMTMTDTTRKFDNLTPLTDYTVEIAGSDGAGAQVAL
KKDVQTKGPPVNNVKVDATEATGTKATVTFDEVTGLKDIQDTADVEVEAC
PADKTKCVTQTVKAKGGTTVEFEGLTPGTEYTYSAYVKNPANDAKGPPSE
GKFTTAPGTGEFDSFLCFLIELEPDINYL

Run BLAST on NCBI

transcript from alignment at sc0000020:721309..724590+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002457 ID=TCONS_00002457|Name=TCONS_00002457|organism=Clytia hemisphaerica|type=transcript|length=3282bp|location=Sequence derived from alignment at sc0000020:721309..724590+ (Clytia hemisphaerica)
cccccccccgtctattcgggagacaagagtacctTCATGACTCCTATTAC
TGTCAAACCCCAAAATTTACCTATTTAGTGACTTTCGAACATCAATAAAC
ATCTTGGTTCTTATAATAATgtaaattcttataagaaaattacCAAATAA
AATGATGCTGATGTTAGTGATTTAGCAACAAACTCATCTTAAAGCAAAGA
GCCCTCTAACGAGGTTGAACTAAAAAACGTCATTAGAGCATTTTTGTGGT
CAATCttttgatttaattattttataaaTGATGCGAAAAAAGGGTATAAA
ACAGGCATCTCAAAGACCTGGAAATTCATATCAAATCATTCTTCGTGCAG
CAGACACTAAGAGGACAAGAAGCGAAACAGCAAAGAagacaattttcatt
tttttgcaaaaccgATGCTGAATTGGTAAATTTCAACTGAAATTGGTAAG
TAAAGCTTATAGATTGGGCTCTGCCAGAAAATTTTCGTATATGGGAGTGG
AGGATATACTGGACATTTTATCCGGGAGgagtagtgaaaaatctacaaaa
tttgccttgtttgtTGGGGCAAAACTGCTTTGTTTAGGGGTAATTAtgaa
tgtccgggggtaaatttcctgaaaattatatatcctccacccctatatat
tcattttttttctggaagagcccatttttattttagtttcttgATCGTGT
GTTTTCTTTTGGGTTCAACATAGGCTTTACGATGTTAACCAACAGTTTTA
TATGAAacacccttgtctcacagccccgctgcaagttttttcctcagtgg
gcgtgaaaatttatatcaaaatatagGGTGCAAAACTCCATTGcctttcg
aatggggatgaaatcaaaaaaatcaattttccaggTATTAATTTTTTCCA
CCAGGGACGAAACTTTGGGTAAATCTTCCAGTGGGGTGGGTCGTGACAAG
TTTTAGAAGTTTAACAAtatcttgaaaaaaattgataatttacCCAAAAG
GTTATGATATCCTGGGAAAATTCATAGTGAAATTCCTGTACTAGAAAAAA
AATCGTCCGCTTTCTCATAAAAGCCTTGTATTTCATTCTCTGAAGAAAGT
TAAACTGTCATTTTCTTAACGAGTTTTAGCCAATGACCCTTTGATTAATT
ACAGACACGGGATTAATTAATTCTAACAATATCCCTTATGATGTGGTTTT
AAATAGCACTTTACTGTCAGCCATTGTTTGAAAACTTTTGCACGTGTGTA
AATCTTTTCgacaaatctttcaaaaacttctcCTTGTTAGGGTATATTTA
CCCTTTGGTAGGACAAATTCTAATATTAatcttttacacgtttttttata
agaacttccaaaatttttgaagctttcggatgtcttaactttttaatcct
aaatataccgggtgcaccaaaaagaagtatacaggtttgtcgagatactG
TGGGCTTcagcatttaaattttttgtttattcttttattatcgtatagag
gatgctctaacttgaattttgagctatcatacattagatTTGAAAAGgta
gttcgaaaattatttttaaaaaactgacttNAAACCAATCAACGAATCAA
tcaatttgtttattttccaCCATAGAGTAAACAACCAACCCATCTTGGAA
GATGATACAAAGGATAGCCATTGTGCTGTCGCTATGGGCAGTTCTAGTTA
CCGCACAAAAATCAGGTtagtttgtaattttttaaacactttttataTAA
GTTCATTGGAAGGATTTTTGACTCTAGAAAAcgtaacttttgaaaaataa
attcctcACAGAATCCCGACATCTTAAAAGCAACTGCAACAGACTACATC
CTTCACTTTTGAGAACAAACTTAAAATGAGTTAGAAGGAAGTAAGCTTCA
CAAAGAGCCTGAAACTTGATTCGATCAAAAACTGCAATTATAtcaagaga
aataaaaaaaaaaaaaacaaacaagtgTTATTCCCGCATTTATAAATACa
taatttataaaaacattcatatACCTCAGGTACATTGGATATTGGTGAGG
TAACAACTGACAGTATCGACACGTCATTCACTTTTGACGTCGCGCCGACC
AAATTGACGGCCACTTTAGACCAAAAAGATCCATTTAAACGACTGATCAA
TGCAGAGGAAATGACCATGACAGACACCACAAGGAAATTTGACAACCTCA
CACCGTTAACAGATTACACTGTGGAGATTGCCGGCTCTGATGGTGCTGGT
GCACAAGTCGCTTTGAAAAAAGATGTCCAAACCAAAGGTGAGGGCCATTG
taaaactttttcccacagtggggatgaatttttttatttaaaagccacaa
tggggatagaaattctattgttcctgAGTCGAAATATccggtggggatgg
ttttggagtgcaatttttttactttgaattttgaatggggatgaaatcaa
agtcaattccccagtggggatgagattgtagggtatttttcccaacgGGC
ACGAGATTTTGGCCGAATTTTCCAGTGcagctggggtcccagcgggtctg
tgacatagGGGTGTATTGTTCAATTTGACCGATCACTGTATGGGAAAGTT
AGCAAGGAACGAATGATATCAAAACCTGTCTGTAAGTTTACCAGGGTCGG
AAGACATCATTAAATGTCTCTATCTCTAAGTATGTAAATACAATGACTAT
TAACACTTGATGATAGTTGACCCATTCAAACTCAATACCCTCTCATGCag
gtgttttttgtttttcagcgCTATAAAATACTGTTATTTCGAGAATTTAT
CTTCCTTAAAAAGCGTATTCTAATACGAGATGATAGCAGAGTTCCGTCTG
TGAATCTTCCACAGAATATTAACTCCCATCAACTTCTTTTTATCACTATA
GGTCCACCAGTCAATAATGTTAAAGTCGATGCAACAGAAGCTACTGGTAC
CAAAGCTACAGTCACCTTCGATGAAGTCACTGGTCTCAAAGATATCCAAG
ATACTGCTGATGTAGAAGTTGAAGCCTGTCCCGCTGATAAAACCAAATGC
GTCACCCAAACTGTCAAAGCCAAGGGAGGAACGACTGTTGAATTTGAAGG
ACTTACACCAGGCACTGAATATACTTATTCAGCTTACGTTAAGAACCCAG
CTAATGACGCCAAAGGGCCACCTTCCGAAGGGAAATTTACAACTGCACCA
GGAACTGGTGAGTTTGATTCCTTTTTATGTTTCCTAATTGAATTGGAGCC
TGATATTAACTATCTTTAGCAATAATGCGGAA

Coding sequence (CDS) from alignment at sc0000020:721309..724590+

>TCONS_00002457 ID=TCONS_00002457|Name=TCONS_00002457|organism=Clytia hemisphaerica|type=CDS|length=2070bp|location=Sequence derived from alignment at sc0000020:721309..724590+ (Clytia hemisphaerica)
ATGATACAAAGGATAGCCATTGTGCTGTCGCTATGGGCAGTTCTAGTTAC
CGCACAAAAATCAGGTACATTGGATATTGGTGAGGTAACAACTGACAGTA
TCGACACGTCATTCACTTTTGACGTCGCGCCGACCAAATTGACGGCCACT
TTAGACCAAAAAGATCCATTTAAACGACTGATCAATGCAGAGGAAATGAC
CATGACAGACACCACAAGGAAATTTGACAACCTCACACCGTTAACAGATT
ACACTGTGGAGATTGCCGGCTCTGATGGTGCTGGTGCACAAGTCGCTTTG
AAAAAAGATGTCCAAACCAAAGGTCCACCAGTCAATAATGTTAAAGTCGA
TGCAACAGAAGCTACTGGTACCAAAGCTACAGTCACCTTCGATGAAGTCA
CTGGTCTCAAAGATATCCAAGATACTGCTGATGTAGAAGTTGAAGCCTGT
CCCGCTGATAAAACCAAATGCGTCACCCAAACTGTCAAAGCCAAGGGAGG
AACGACTGTTGAATTTGAAGGACTTACACCAGGCACTGAATATACTTATT
CAGCTTACGTTAAGAACCCAGCTAATGACGCCAAAGGGCCACCTTCCGAA
GGGAAATTTACAACTGCACCAGGAACTGGTGAGTTTGATTCCTTTTTATG
TTTCCTAATTGAATTGGAGCCTGATATTAACTATCTTTAGATGATACAAA
GGATAGCCATTGTGCTGTCGCTATGGGCAGTTCTAGTTACCGCACAAAAA
TCAGGTACATTGGATATTGGTGAGGTAACAACTGACAGTATCGACACGTC
ATTCACTTTTGACGTCGCGCCGACCAAATTGACGGCCACTTTAGACCAAA
AAGATCCATTTAAACGACTGATCAATGCAGAGGAAATGACCATGACAGAC
ACCACAAGGAAATTTGACAACCTCACACCGTTAACAGATTACACTGTGGA
GATTGCCGGCTCTGATGGTGCTGGTGCACAAGTCGCTTTGAAAAAAGATG
TCCAAACCAAAGGTCCACCAGTCAATAATGTTAAAGTCGATGCAACAGAA
GCTACTGGTACCAAAGCTACAGTCACCTTCGATGAAGTCACTGGTCTCAA
AGATATCCAAGATACTGCTGATGTAGAAGTTGAAGCCTGTCCCGCTGATA
AAACCAAATGCGTCACCCAAACTGTCAAAGCCAAGGGAGGAACGACTGTT
GAATTTGAAGGACTTACACCAGGCACTGAATATACTTATTCAGCTTACGT
TAAGAACCCAGCTAATGACGCCAAAGGGCCACCTTCCGAAGGGAAATTTA
CAACTGCACCAGGAACTGGTGAGTTTGATTCCTTTTTATGTTTCCTAATT
GAATTGGAGCCTGATATTAACTATCTTTAGATGATACAAAGGATAGCCAT
TGTGCTGTCGCTATGGGCAGTTCTAGTTACCGCACAAAAATCAGGTACAT
TGGATATTGGTGAGGTAACAACTGACAGTATCGACACGTCATTCACTTTT
GACGTCGCGCCGACCAAATTGACGGCCACTTTAGACCAAAAAGATCCATT
TAAACGACTGATCAATGCAGAGGAAATGACCATGACAGACACCACAAGGA
AATTTGACAACCTCACACCGTTAACAGATTACACTGTGGAGATTGCCGGC
TCTGATGGTGCTGGTGCACAAGTCGCTTTGAAAAAAGATGTCCAAACCAA
AGGTCCACCAGTCAATAATGTTAAAGTCGATGCAACAGAAGCTACTGGTA
CCAAAGCTACAGTCACCTTCGATGAAGTCACTGGTCTCAAAGATATCCAA
GATACTGCTGATGTAGAAGTTGAAGCCTGTCCCGCTGATAAAACCAAATG
CGTCACCCAAACTGTCAAAGCCAAGGGAGGAACGACTGTTGAATTTGAAG
GACTTACACCAGGCACTGAATATACTTATTCAGCTTACGTTAAGAACCCA
GCTAATGACGCCAAAGGGCCACCTTCCGAAGGGAAATTTACAACTGCACC
AGGAACTGGTGAGTTTGATTCCTTTTTATGTTTCCTAATTGAATTGGAGC
CTGATATTAACTATCTTTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001314	XLOC_001314	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002457-protein	TCONS_00002457-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002457-exon-sc0000020-1491911889:721309..721753	TCONS_00002457-exon-sc0000020-1491911889:721309..721753	Clytia hemisphaerica	exon
TCONS_00002457-exon-sc0000020-1510915933:721309..721753	TCONS_00002457-exon-sc0000020-1510915933:721309..721753	Clytia hemisphaerica	exon
TCONS_00002457-exon-sc0000020-1575043694:721309..721753	TCONS_00002457-exon-sc0000020-1575043694:721309..721753	Clytia hemisphaerica	exon
TCONS_00002457-exon-sc0000020-1491911889:722934..723023	TCONS_00002457-exon-sc0000020-1491911889:722934..723023	Clytia hemisphaerica	exon
TCONS_00002457-exon-sc0000020-1510915933:722934..723023	TCONS_00002457-exon-sc0000020-1510915933:722934..723023	Clytia hemisphaerica	exon
TCONS_00002457-exon-sc0000020-1575043694:722934..723023	TCONS_00002457-exon-sc0000020-1575043694:722934..723023	Clytia hemisphaerica	exon
TCONS_00002457-exon-sc0000020-1491911889:723338..723595	TCONS_00002457-exon-sc0000020-1491911889:723338..723595	Clytia hemisphaerica	exon
TCONS_00002457-exon-sc0000020-1510915933:723338..723595	TCONS_00002457-exon-sc0000020-1510915933:723338..723595	Clytia hemisphaerica	exon
TCONS_00002457-exon-sc0000020-1575043694:723338..723595	TCONS_00002457-exon-sc0000020-1575043694:723338..723595	Clytia hemisphaerica	exon
TCONS_00002457-exon-sc0000020-1491911889:724210..724590	TCONS_00002457-exon-sc0000020-1491911889:724210..724590	Clytia hemisphaerica	exon
TCONS_00002457-exon-sc0000020-1510915933:724210..724590	TCONS_00002457-exon-sc0000020-1510915933:724210..724590	Clytia hemisphaerica	exon
TCONS_00002457-exon-sc0000020-1575043694:724210..724590	TCONS_00002457-exon-sc0000020-1575043694:724210..724590	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000020	supercontig	sc0000020:721309..724590 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.72057	2.83224	1.45693	1.50683	0.198316	0.117534	0	0.309753	0.216865	0.460496	0.186237	0.171395	92.4245	82.5511	104.798	94.7882	28.0406	29.7307	0.742548	1.92211	0.035546	0.0520143	0.590148	0.383236	0.197362	0.563651	0.100823	0	0.408057	0.582044

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003961	FN3_dom
IPR013783	Ig-like_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00002457 vs. Swiss-Prot (Human)

BLAST of TCONS_00002457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00002457 (transcript) - C. hemisphaerica