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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002461 ID=TCONS_00002461|Name=TCONS_00002461|organism=Clytia hemisphaerica|type=transcript|length=1204bp
cacttttcaaataaaaccGTTAAGCCTTGTGaagggaagaaaaaaagtta
gcAGTTTATGCACAGTTTTATCAATGAAATTAACCTTgcaaaatcgaaga
aaaatcaataaagaAGCGTACGTAATGAAAAGTACGTCAGTTCTGGTCAG
TTTGGAAAAGTAATAAACtcattcatttcaaatttcCGGATAATTACTTG
GGAATTAACTTGCTTTTCTATGGAACCATGGTTCGTTGTCTTTTGCTCAT
AAATTGTATTTTGGTAAGCTTACCATCAAATGTCTATGGAAGCATATTTG
CTGAAGGAGAACTTAAGAATGAACATTGCCAAAAAACTCATGAATCCATT
TCACATTCCCTGGTAGAATGTCTTTTGAAATGTGATCGAAAACACTCAAA
TGTTTTGTTCGGTAGAGATAGCAAGAAATGTTATTGTGTTTCACCAATTT
ACGGCAATGGACAGGAAGGCTCAATTGTTTGCCCATCAAGCAACGAGttg
aaatattataaaaatcagagaaagATAACTGGGCAGGATGACAAGAACGG
CTCGAAAATAACTCATGAACTTCAAGACTCATCATCGACGACAACACAGC
CTTCAACGTTTTCCTCAACAACAACCACTCAAACTACAACAACGACCGTT
TCCACAACTACAACTGATATCCCTACGACTACAACGACCATTCCAAAGAC
CACTTCGACTACAACAACGACGACtccaactacaacaacgacgactccaa
ctacaacaacgaccattcccacaactacaacgaccattcccacaactaca
acgaccattcccacaactacaacgaccattcccacaactacaacgaccat
tcccacaacaacaacgaccattTCAACGACTACAACGACCACTGAAGAAC
CCATTGATTGTCCTCTTCAAGAAAACGTTGGTATTTCAAGTAACGATGGT
AGTGAAGGCGTGAACGCTCAATCAAAAAACGAATGTATTAGAAAATGTTT
CGACAAAAGAAAAAACGATCCTGACTATCAAAGTATGATGTATTACTTTG
ACACATCAAATATAGCTTATTGTGTCTGCAATAAAGGCATAACACTCGTT
ACAATTTTGCCAGGGAATATTAAGAGTGTCACCAGTTGTATTTATGCTTG
AAAATATTCCCTTGATTTTAAGACCCTTCGAACAAAGTTTTcctaattaa
aaac Run BLAST on NCBI protein sequence of TCONS_00002461-protein >TCONS_00002461-protein ID=TCONS_00002461-protein|Name=TCONS_00002461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MVRCLLLINCILVSLPSNVYGSIFAEGELKNEHCQKTHESISHSLVECLL
KCDRKHSNVLFGRDSKKCYCVSPIYGNGQEGSIVCPSSNELKYYKNQRKI
TGQDDKNGSKITHELQDSSSTTTQPSTFSSTTTTQTTTTTVSTTTTDIPT
TTTTIPKTTSTTTTTTPTTTTTTPTTTTTIPTTTTTIPTTTTTIPTTTTT
IPTTTTTIPTTTTTISTTTTTTEEPIDCPLQENVGISSNDGSEGVNAQSK
NECIRKCFDKRKNDPDYQSMMYYFDTSNIAYCVCNKGITLVTILPGNIKS
VTSCIYA Run BLAST on NCBI transcript from alignment at sc0000020:787192..789725+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002461 ID=TCONS_00002461|Name=TCONS_00002461|organism=Clytia hemisphaerica|type=transcript|length=2534bp|location=Sequence derived from alignment at sc0000020:787192..789725+ (Clytia hemisphaerica)
cacttttcaaataaaaccGTTAAGCCTTGTGaagggaagaaaaaaagtta
gcAGTTTATGCACAGTTTTATCAATGAAATTAACCTTgcaaaatcgaaga
aaaatcaataaagaAGCGTACGTAATGAAAAGTACGTCAGTTCTGGTCAG
TTTGGAAAAGTAATAAACtcattcatttcaaatttcCGGATAATTACTTG
GGAATTAACTTGCTTTTCTATGGAACCATGGTTCGTTGTCTTTTGCTCAT
AAATTGTATTTTGGTAAGCTTACCATCAAATGTCTATGGAAGCATATTTG
CTGAAGGAGAACTTAAGAATGAACATTGCCAAAAAACTCATGAATCCATT
TCACATTCCCTGGTAGAATNAAGAATGAACATTGCCGAAAAACTCATGAA
TCCATTTCACATTCCCTGGTAGAATGTCTTTTGAAATGTGATCGAAAACA
CTCAAATGTTTTGTTCGGTAGAGATAGCAAGAAATGTTATTGTGTTTCAC
CAATTTACGGCAATGGACAGGAAGGCTCAATTGTTTGCCCATCAAGCAAC
GAGttgaaatattataaaaatcagagaaaggtaaggacatgtttttttat
attgataaGTGTAAGTGAAGTTTCCGATATgtgaaattcatgatattcat
gacgtaatgttttctacggaaagaccccggatttagccagtagtggcaaa
tttaaactagacaaaagttgtataaaatttgccactactggcaaaaaccg
gggtctttccgtagaaaacattacgtcatgaatatcatgaatagagtaGT
CTTAGCATACAATAGTTCGCGGTGCTTTAGTCACCATTTGTTGCACGGAA
ACCTGGCGACGAAAATCCGTTTGCTGAATCTAATCTTTCCGAGTTTCATT
ACGGCGATGACTTTTCAGTAACAGATTCTGTCGACAGGCCTGACCTACAA
TACcggccataatatttgagaaaaaaaagggaaattcccacgaaatctta
tagccacaatcgatttggaagagctctaacttaggttggatGGGTAgcgt
tttaacatgagacttaagatttaggaccttaggatctgaggatccaaaag
ttcaagaacgatcgaatagggctcagaatatggcctggaagtctataaac
cccacccaaattaaaatattcgattaaatccAACAAATAGctcaaaagcg
actttctcggccgaactttaaaatgctaaaaactAGGAACtgaccaaaat
tctcaatacaTTTTGACCGATATTGTAGCTGACAAAGTTGACTACAAAGT
TGAATGCGTTCGTATTTGATTGCTTTAGAAATATTTAAGCAATAGCAATT
ACTTTACGCGCACTGGCTTTTGCGGACTCGAATTCTCATCACTTTAAAAG
CCAGATCCTCAGACTACTATATTTCTTATTTCTTGAGCTTAGCGTGATAA
GGGATATGTTTGTGTTATtagtatttttaaattttttctccaTAGATATG
ATGTCATAGTTTATTCTCTTTTTATAGATAACTGGGCAGGATGACAAGAA
CGGCTCGAAAATAACTCATGAACTTCAAGACTCATCATCGACGACAACAC
AGCCTTCAACGTTTTCCTCAACAACAACCACTCAAACTACAACAACGACC
GTTTCCACAACTACAACTGATATCCCTACGACTACAACGACCATTCCAAA
GACCACTTCGACTACAACAACGACGACtccaactacaacaacgacgactc
caactacaacaacgaccattcccacaactacaacgaccattcccacaact
acaacgaccattcccacaactacaacgaccattcccacaactacaacgac
cattcccacaacaacaacgaccattTCAACGACTACAACGACCACTGAAG
AACGTAAGTCTTATACTTTTTAGCTCAGCATCATTGAGACAAATGATACC
TTACCATGTAGCTCAATCTCAGTTTTTATTACCTGACTGAATCTGTTGAT
GAATTTCTTGAAACATTTCTTCGTTCAGAAACCGATTAGAGGGCAGCAAG
CAACTTTTTCATCGAAGTGAAACTTTTTGCgtgtttcagttttcaaatgt
ttcatatttaatgaaaaatgcttCAAGTGGCCCCGGACCTTTAAAGATGA
CTTTAGTTTCCTATGTTGGCTAATAAGAATGATCGACATagtaataaaat
tttgatacatttttttgtattcttttttAGCCATTGATTGTCCTCTTCAA
GAAAACGTTGGTATTTCAAGTAACGATGGTAGTGAAGGCGTGAACGCTCA
ATCAAAAAACGAATGTATTAGAAAATGTTTCGACAAAAGAAAAAACGATC
CTGACTATCAAAGTATGATGTATTACTTTGACACATCAAATATAGCTTAT
TGTGTCTGCAATAAAGGCATAACACTCGTTACAATTTTGCCAGGGAATAT
TAAGAGTGTCACCAGTTGTATTTATGCTTGAAAATATTCCCTTGATTTTA
AGACCCTTCGAACAAAGTTTTcctaattaaaaac Coding sequence (CDS) from alignment at sc0000020:787192..789725+ >TCONS_00002461 ID=TCONS_00002461|Name=TCONS_00002461|organism=Clytia hemisphaerica|type=CDS|length=3696bp|location=Sequence derived from alignment at sc0000020:787192..789725+ (Clytia hemisphaerica)
ATGGTTCGTTGTCTTTTGCTCATAAATTGTATTTTGGTAAGCTTACCATC
AAATGTCTATGGAAGCATATTTGCTGAAGGAGAACTTAAGAATGAACATT
GCCAAAAAACTCATGAATCCATTTCACATTCCCTGGTAGAATGTCTTTTG
AAATGTGATCGAAAACACTCAAATGTTTTGTTCGGTAGAGATAGCAAGAA
ATGTTATTGTGTTTCACCAATTTACGGCAATGGACAGGAAGGCTCAATTG
TTTGCCCATCAAGCAACGAGttgaaatattataaaaatcagagaaagATA
ACTGGGCAGGATGACAAGAACGGCTCGAAAATAACTCATGAACTTCAAGA
CTCATCATCGACGACAACACAGCCTTCAACGTTTTCCTCAACAACAACCA
CTCAAACTACAACAACGACCGTTTCCACAACTACAACTGATATCCCTACG
ACTACAACGACCATTCCAAAGACCACTTCGACTACAACAACGACGACtcc
aactacaacaacgacgactccaactacaacaacgaccattcccacaacta
caacgaccattcccacaactacaacgaccattcccacaactacaacgacc
attcccacaactacaacgaccattcccacaacaacaacgaccattTCAAC
GACTACAACGACCACTGAAGAACCCATTGATTGTCCTCTTCAAGAAAACG
TTGGTATTTCAAGTAACGATGGTAGTGAAGGCGTGAACGCTCAATCAAAA
AACGAATGTATTAGAAAATGTTTCGACAAAAGAAAAAACGATCCTGACTA
TCAAAGTATGATGTATTACTTTGACACATCAAATATAGCTTATTGTGTCT
GCAATAAAGGCATAACACTCGTTACAATTTTGCCAGGGAATATTAAGAGT
GTCACCAGTTGTATTTATGCTTGAATGGTTCGTTGTCTTTTGCTCATAAA
TTGTATTTTGGTAAGCTTACCATCAAATGTCTATGGAAGCATATTTGCTG
AAGGAGAACTTAAGAATGAACATTGCCAAAAAACTCATGAATCCATTTCA
CATTCCCTGGTAGAATGTCTTTTGAAATGTGATCGAAAACACTCAAATGT
TTTGTTCGGTAGAGATAGCAAGAAATGTTATTGTGTTTCACCAATTTACG
GCAATGGACAGGAAGGCTCAATTGTTTGCCCATCAAGCAACGAGttgaaa
tattataaaaatcagagaaagATAACTGGGCAGGATGACAAGAACGGCTC
GAAAATAACTCATGAACTTCAAGACTCATCATCGACGACAACACAGCCTT
CAACGTTTTCCTCAACAACAACCACTCAAACTACAACAACGACCGTTTCC
ACAACTACAACTGATATCCCTACGACTACAACGACCATTCCAAAGACCAC
TTCGACTACAACAACGACGACtccaactacaacaacgacgactccaacta
caacaacgaccattcccacaactacaacgaccattcccacaactacaacg
accattcccacaactacaacgaccattcccacaactacaacgaccattcc
cacaacaacaacgaccattTCAACGACTACAACGACCACTGAAGAACCCA
TTGATTGTCCTCTTCAAGAAAACGTTGGTATTTCAAGTAACGATGGTAGT
GAAGGCGTGAACGCTCAATCAAAAAACGAATGTATTAGAAAATGTTTCGA
CAAAAGAAAAAACGATCCTGACTATCAAAGTATGATGTATTACTTTGACA
CATCAAATATAGCTTATTGTGTCTGCAATAAAGGCATAACACTCGTTACA
ATTTTGCCAGGGAATATTAAGAGTGTCACCAGTTGTATTTATGCTTGAAT
GGTTCGTTGTCTTTTGCTCATAAATTGTATTTTGGTAAGCTTACCATCAA
ATGTCTATGGAAGCATATTTGCTGAAGGAGAACTTAAGAATGAACATTGC
CAAAAAACTCATGAATCCATTTCACATTCCCTGGTAGAATGTCTTTTGAA
ATGTGATCGAAAACACTCAAATGTTTTGTTCGGTAGAGATAGCAAGAAAT
GTTATTGTGTTTCACCAATTTACGGCAATGGACAGGAAGGCTCAATTGTT
TGCCCATCAAGCAACGAGttgaaatattataaaaatcagagaaagATAAC
TGGGCAGGATGACAAGAACGGCTCGAAAATAACTCATGAACTTCAAGACT
CATCATCGACGACAACACAGCCTTCAACGTTTTCCTCAACAACAACCACT
CAAACTACAACAACGACCGTTTCCACAACTACAACTGATATCCCTACGAC
TACAACGACCATTCCAAAGACCACTTCGACTACAACAACGACGACtccaa
ctacaacaacgacgactccaactacaacaacgaccattcccacaactaca
acgaccattcccacaactacaacgaccattcccacaactacaacgaccat
tcccacaactacaacgaccattcccacaacaacaacgaccattTCAACGA
CTACAACGACCACTGAAGAACCCATTGATTGTCCTCTTCAAGAAAACGTT
GGTATTTCAAGTAACGATGGTAGTGAAGGCGTGAACGCTCAATCAAAAAA
CGAATGTATTAGAAAATGTTTCGACAAAAGAAAAAACGATCCTGACTATC
AAAGTATGATGTATTACTTTGACACATCAAATATAGCTTATTGTGTCTGC
AATAAAGGCATAACACTCGTTACAATTTTGCCAGGGAATATTAAGAGTGT
CACCAGTTGTATTTATGCTTGAATGGTTCGTTGTCTTTTGCTCATAAATT
GTATTTTGGTAAGCTTACCATCAAATGTCTATGGAAGCATATTTGCTGAA
GGAGAACTTAAGAATGAACATTGCCAAAAAACTCATGAATCCATTTCACA
TTCCCTGGTAGAATGTCTTTTGAAATGTGATCGAAAACACTCAAATGTTT
TGTTCGGTAGAGATAGCAAGAAATGTTATTGTGTTTCACCAATTTACGGC
AATGGACAGGAAGGCTCAATTGTTTGCCCATCAAGCAACGAGttgaaata
ttataaaaatcagagaaagATAACTGGGCAGGATGACAAGAACGGCTCGA
AAATAACTCATGAACTTCAAGACTCATCATCGACGACAACACAGCCTTCA
ACGTTTTCCTCAACAACAACCACTCAAACTACAACAACGACCGTTTCCAC
AACTACAACTGATATCCCTACGACTACAACGACCATTCCAAAGACCACTT
CGACTACAACAACGACGACtccaactacaacaacgacgactccaactaca
acaacgaccattcccacaactacaacgaccattcccacaactacaacgac
cattcccacaactacaacgaccattcccacaactacaacgaccattccca
caacaacaacgaccattTCAACGACTACAACGACCACTGAAGAACCCATT
GATTGTCCTCTTCAAGAAAACGTTGGTATTTCAAGTAACGATGGTAGTGA
AGGCGTGAACGCTCAATCAAAAAACGAATGTATTAGAAAATGTTTCGACA
AAAGAAAAAACGATCCTGACTATCAAAGTATGATGTATTACTTTGACACA
TCAAATATAGCTTATTGTGTCTGCAATAAAGGCATAACACTCGTTACAAT
TTTGCCAGGGAATATTAAGAGTGTCACCAGTTGTATTTATGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002461-exon-sc0000020-1491911889:787192..787545 | TCONS_00002461-exon-sc0000020-1491911889:787192..787545 | Clytia hemisphaerica | exon |
| TCONS_00002461-exon-sc0000020-1510915933:787192..787545 | TCONS_00002461-exon-sc0000020-1510915933:787192..787545 | Clytia hemisphaerica | exon |
| TCONS_00002461-exon-sc0000020-1575043694:787192..787545 | TCONS_00002461-exon-sc0000020-1575043694:787192..787545 | Clytia hemisphaerica | exon |
| TCONS_00002461-exon-sc0000020-1491911889:787602..787771 | TCONS_00002461-exon-sc0000020-1491911889:787602..787771 | Clytia hemisphaerica | exon |
| TCONS_00002461-exon-sc0000020-1510915933:787602..787771 | TCONS_00002461-exon-sc0000020-1510915933:787602..787771 | Clytia hemisphaerica | exon |
| TCONS_00002461-exon-sc0000020-1575043694:787602..787771 | TCONS_00002461-exon-sc0000020-1575043694:787602..787771 | Clytia hemisphaerica | exon |
| TCONS_00002461-exon-sc0000020-1491911889:788719..789094 | TCONS_00002461-exon-sc0000020-1491911889:788719..789094 | Clytia hemisphaerica | exon |
| TCONS_00002461-exon-sc0000020-1510915933:788719..789094 | TCONS_00002461-exon-sc0000020-1510915933:788719..789094 | Clytia hemisphaerica | exon |
| TCONS_00002461-exon-sc0000020-1575043694:788719..789094 | TCONS_00002461-exon-sc0000020-1575043694:788719..789094 | Clytia hemisphaerica | exon |
| TCONS_00002461-exon-sc0000020-1491911889:789422..789725 | TCONS_00002461-exon-sc0000020-1491911889:789422..789725 | Clytia hemisphaerica | exon |
| TCONS_00002461-exon-sc0000020-1510915933:789422..789725 | TCONS_00002461-exon-sc0000020-1510915933:789422..789725 | Clytia hemisphaerica | exon |
| TCONS_00002461-exon-sc0000020-1575043694:789422..789725 | TCONS_00002461-exon-sc0000020-1575043694:789422..789725 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:787192..789725 + |
Blast
The following BLAST results are available for this feature:
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