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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002465 ID=TCONS_00002465|Name=TCONS_00002465|organism=Clytia hemisphaerica|type=transcript|length=3393bpRun BLAST on NCBI protein sequence of TCONS_00002465-protein >TCONS_00002465-protein ID=TCONS_00002465-protein|Name=TCONS_00002465-protein|organism=Clytia hemisphaerica|type=polypeptide|length=907bp MIYWKIIGFLFLALVLISCHASATKDSRSKDKEDKNSDDKKKSKHGKKEDRun BLAST on NCBI transcript from alignment at sc0000020:799434..818600+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002465 ID=TCONS_00002465|Name=TCONS_00002465|organism=Clytia hemisphaerica|type=transcript|length=19167bp|location=Sequence derived from alignment at sc0000020:799434..818600+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000020:799434..818600+ >TCONS_00002465 ID=TCONS_00002465|Name=TCONS_00002465|organism=Clytia hemisphaerica|type=CDS|length=38136bp|location=Sequence derived from alignment at sc0000020:799434..818600+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00002465 vs. Swiss-Prot (Human)
Match: CNTP4 (Contactin-associated protein-like 4 OS=Homo sapiens GN=CNTNAP4 PE=1 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 2.437e-17 Identity = 50/136 (36.76%), Postives = 70/136 (51.47%), Query Frame = 1
Query: 2056 YAPPNARLNNEINGGGW--CAEHKYSTQDDKDQFIQIDLGKQMSVDGVATQGSHLLENWVKKYNLRYSDDGKSWQYYSKN----PLNGNNDQNSIQRSVISPPITGRYFQLNPIEWNQGVEPDKHDICMRIALFKC 2445
+ P ARLN GGW +KY Q++QIDLG++M V VATQG + NWV Y L +SD G +W+ Y + +GN + +S+ + P I R+ + P+EWN K I MRI +F C
Sbjct: 54 HGPGFARLNRRDGAGGWSPLVSNKY-------QWLQIDLGERMEVTAVATQGGYGSSNWVTSYLLMFSDSGWNWKQYRQEDSIWGFSGNANADSVVYYRLQPSIKARFLRFIPLEWN-----PKGRIGMRIEVFGC 177 The following BLAST results are available for this feature:
BLAST of TCONS_00002465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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