TCONS_00002467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002467
Unique NameTCONS_00002467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2016

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002467 ID=TCONS_00002467|Name=TCONS_00002467|organism=Clytia hemisphaerica|type=transcript|length=2016bp
CCTTGCTCAGTCACGTGTTCATATGGAACACGTGTTCGATTACGCACGTG
TACTGAACCAGTTCCCGCCAATAATGGTGCTGATTGTACGGGACCGAGAG
TGGAAGATGAAGAATGCTATATGGGGCCTTGCAAAGTTtcatcaaccaat
cagaatccATCAAGTCCATCAGTAGCCAATCAGGGCTCATTATTGAATCA
AGCAACGTCCAATCAGAATCTGTCGCTACCGGCAACTGCATCTCACAACT
CAAAACAACCAGTAGAATTTCCACCAGCTGATGACAATAAACCAACAACA
TCCTCGTCAAAAACAGAAGCAAGACTGACCACCAGTAATAAAACTAGCAC
TGACTCTTTAGCGTCTAACAACCAACCAACAATGAACAGTTTAGCAAATG
TGACATCAAACAAGTCCACACCAAGTGGTTTTGTAGATAGCAAGAATAAT
TTGTTACCAACACTGACTGTTGAAAAGGTTTTACACCCGTCATTAAGAGC
AAACATGACGAACAATGATGCCAAGAAAGTTTCTGGAGCATCGACAAGAT
CTCCAACAGAGAGCAGTGAAGgaAGCTGCAGTGAGGCTTCGTTGCTTAAA
CTTCCGTTAAACGACACTCAATTCACGGCGTCGTCCGTCTATTCTCACGA
CACGGACGACGATTATGTCAAAAGGGAATATGCACCGCCAAACGCCCGTC
TTAATAATGAAATCAACGGAGGTGGTTGGTGTGCAGAGCATAAATACAGT
ACACAAGATGATAAAGATCAATTCATACAAATCGACCTCGGGAAACAGAT
GTCTGTGGATGGTGTAGCAACCCAGGGTAGTCATTTATTAGAGAATTGGG
TCAAAAAATATAATttgagATACAGCGATGATGGCAAGAGTTGGCAATAC
TACTCAAAGAATCCACTCAATGGTAATAACGATCAAAACAGTATCCAGCG
AAGTGTGATTTCTCCACCAATCACAGGCCgttattttcaattaaatccAA
TCGAATGGAACCAAGGTGTTGAACCTGATAAACATGATATATGTATGAGG
ATTGCATTATTCAAGTGTAAAGAAACCCCATCTTCAGAAGCTGCTACATC
ACCTACCGTTAAACGGAGCTTTATACAACCACGACCACATCATCGTAGCA
TCAATAACAAGCGTGGTGTTGTCATACGAGAACAAGCATGGTGGACACAC
TACCCAGAAGAAAAAGCTAAATTAACTTTATTGAACGTTAATAAAATTGT
TGGTCCTAGTGAAGCCAGGATTCGAAGACAGGATGAGGATGTCTTAACAG
TTTTCCCAGGACATAAGAAAGGAcataaaagaattttttcaaagattcgt
AAAATTGCACATAATATTATGAAAAAGATTAGAGCCAAAAGCAAGAAGCA
AAGAATGAAATAAGAGACTGGATCTTATTTGGTTTTGCTATACAAGAAGT
ATTCTTCTACATTTCAATCTACAGTGTATTTTGTCAATGGTTGCGGATCA
CTGCCATAAGAAGAGTGCCTGGCATTTCTTCTAACAGATGCTGTTCTTTT
ATGAAACAATTATTTATTTGAGCTTCAAAAACATTTACAATGCTTTTACA
ATGTACATGATTTGAGTGTTATGGTCATTacaaaaagatatcaaacttCA
AATTCGAGAACGTTTCTTTTGAAACTTCGATTGATTCTGTTAGCAATTAA
AGCCAAAGTCCGCGTGCTATGACCTATTTTAATCATTTCGAAGAACTTCA
ACGTGAAGATTTGATAATATTTGATCTGAATTTCACTTCCTTATACAAAC
ATTTCACATTCTCAGCTTGACAATCCATTCATTAAAGAAATCGGAATCGG
CGGAGCTCGTCTCTGGTgacaaaaaaactgaatttttaaGTGAATACCTA
CCCCTTGACCTATCCCTACTATATTTTTGCCATATATTTATGCCATATTT
TTAAgcttgatttttcttgattttttagcTTTATATAATTTAATTAGAAG
AACTCATCAAAGAAAA
Run BLAST on NCBI

transcript from alignment at sc0000020:812530..818600+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002467 ID=TCONS_00002467|Name=TCONS_00002467|organism=Clytia hemisphaerica|type=transcript|length=6071bp|location=Sequence derived from alignment at sc0000020:812530..818600+ (Clytia hemisphaerica)
CCTTGCTCAGTCACGTGTTCATATGGAACACGTGTTCGATTACGCACGTG
TACTGAACCAGTTCCCGCCAATAATGGTGCTGATTGTACGGGACCGAGAG
TGGAAGATGAAGAATGCTATATGGGGCCTTGCAAAGGTGAGGGATTCTAA
ATAAGCTTGAGTGTCTACCAATTTCATCATCTCGAAAATTCATGATATCT
TTCTCAATAACGTGTTTGATTCCGTTACCCAAAGGTCTTATTTAGGCCTG
GCAAACGACGAATTTCGCCGGTCCAAGGCACAAAAACATTACAATTCACA
GTTCGAAAAGTTTGGTTCgccgcctcaagtacatatttacgATAATCAAA
ACACTGCGCTTGCTAAGAattcgttaatttttcattcgccagcctaccaa
aaacaaagcaaaacccctGGTACCTCAATCAATGGGTTCTTTAAAGTCTT
CTTAGTTAAAATTTTAAGTAATTTCTTCAGGTCTTTTTTATACTGAGATT
TCTTGACTCATATTTAACAATTTGGCTGTGCTTGTGTTTTTAAAAATCGG
TCTTTATAGAgagcgaaaaagtgaaaaaatctaatttttatttGTTGCTT
TCATTGGTTTTTTATCGAATTCACGTGATAGATTTCTCTTTTGATCTAAA
TTTTAGTCGGACAATCTGCTCCTTCAATAGTTTACACCACGCCATTTCCA
ACCACCCGCCACCATACAGCAACGTCCTCAAGCTACTACTCAAACGCCTC
TATTATACCCACATTACCGCCAGCAAGCAATACACAGAAAGTTATGGTCA
CGACACCTGCATATTATTCACCGACAAATTCAACACTATTAACTTCAATT
TCATTCACAAATGCAACTAATTTCCAATCGACACCTCAAAACATCACTAA
TACATCATCAATAGTTtcatcaaccaatcagaatccATCAAGTCCATCAG
TAGCCAATCAGGGCTCATTATTGAATCAAGCAACGTCCAATCAGAATCTG
TCGCTACCGGCAACTGCATCTCACAACTCAAAACAACCAGTAGAATTTCC
ACCAGCTGATGACAATAAACCAACAACATCCTCGTCAAAAACAGAAGCAA
GACTGACCACCAGTAATAAAACTAGCACTGACTCTTTAGGTAAGAATATG
AAACAGACATTGATGCTTTTTGAGGAAACTATTATTTTCCATTACAAGTA
AAGCAAGCAAGTTTGCCACCGTAGTCGAAGGCAGCCTGAAGAGTTACTTT
TCTCTGACTGTCTACCCGAAAGTACGGGAAGGCGGCAGCTCTTTTTCCAG
AAATTCTCCACTTACTCTCATTCTTTTCTTTAGTTACTGAGTATTAAGCA
GAAAGGCATCAAATACTAATACTTTTTTGTACTAAGTAcaaagtctttgg
tatgacccggtcGGAGATTGAACTAACTTGCGCACTGTAGCTAGAAACTC
TACGGCCGCATACCCTCGTCTGTAAAAGACTTGCTACAATATGTTTAATT
TTCTAGCCAATAATATCCCTCTTTTATTTTAGAGCCACCTGATAAAAATC
AAGAATCTTTCCATTACTTCCCTCAACAATAGCCTTTTCAGCAGAAAAAA
ACTGATTGCAAATGTTCTACGGCTTTCGGCTCATTTCTTAAAGATAAAGA
TTTGTCTTAGACTCTAGCATAGTTTAGCCCTTTCAATGAGCGATATTTTG
AGCTCTCCAGATAATCCGAAAAATTTAGCTTTCTCTTTAAGTGTTTGAGT
TGCAGAAGAAAGGGGCCCTAGGGGTATCCAATTTAAAACAGTTATATGTT
CAGTCTACAATATAGTAGagtcttcttaactcgaacatctatgactcgaa
tatctccttaactgGAACAAGTTTTACAGTCCCTGccgttaacaatgcct
tataaacatCTCACTTCATAACTTGAAACTTACTTtgactcgaacaaatt
tgtgttctccGCGTAGGTTCGAGCAATGGAGACTCTACTTTAATGATCTT
TTGAGTGCTCACCTCTATGTAGAGGGGACTGTTTCAAGCTTAATCAATCC
taaattcatatttttctcTACAACAGCGTCTAACAACCAACCAACAATGA
ACAGTTTAGCAAATGTGACATCAAACAAGTCCACACCAAGTGGTTTTGTA
GATAGCAAGAATAATTTGTTACCAACACTGACTGTTGAAAAGGTTTTACA
CCCGTCATTAAGAGCAAACATGACGAACAATGATGGTTAGTATTTTATTG
TTTCTCTCTCTaaaatcatggtcgtaatatttgagaaaaaagggacattc
ccacaaaatcttatagccacaatcgatttggaagcgctctggcttaggtt
ggaagggttaGAGTATTAACTCTGAGTTTCAACATGAGACTTAATACTTA
CGacctaaaacttttttttaaattttgctgttgtcaaagtgcaaaaaaag
ggacgacaaaattccaaaaaatatttttttgtataatgatacttttaatg
atgtgcaactttagtccaaattttatggtaattttcatgtttttgagaca
tgccataacttattTGAGTAGCTCTTAATGAACTAGATGCAGAAACATTG
CTTTACTTTATAAAGGTAACCTCTACCAGACCCCTCTTTTTTGTAGACTg
atcaaaaaaatattctccTGTCACATCTTTTCCTCGGTTTTTCTTAGCCA
AGAAAGTTTCTGGAGCATCGACAAGATCTCCAACAGAGAGCAGTGAAGGT
AAGATACattaattcaatttcatttcattgctAGGACTAATTACTTGATA
GTGCCTTAACATCAAACGAATCgaatttgttttatatttttaggaAGCTG
CAGTGAGGCTTCGTTGCTTAAACTTCCGTTAAACGACACTCAATTCACGG
CGTCGTCCGTCTATTCTCACGACACGGACGACGATTATGTCAAAAGGGAA
TATGCACCGCCAAACGCCCGTCTTAATAATGAAATCAACGGAGGTAAGAC
TTTTACTATTATTGTGTTTAAAACTCTAAAAGGGGTTAAATTTGANTGGA
GGTAAGACTTTTACTATTATTGTGTTTAAAACTCTAAAAGGGGTTAAATT
TGAAATCCTTTAATGGGGGAAAGATGCAACATTTTCCCATCCAAAATGCG
TGACCCGTGTGTGATTTTCACACAAACgtcggattgaaagtaaaacccaC
CGCCAGATCTCGACAATATGCcactcgaaaaaaaaaagaaaatactatTA
TATTCAATCCGTCTTTGAAAAGGTGGCCgaaatcttaaggcttcactttt
tcttgtatgagaaaggttgaagattcttcTCTTGCCCCCGCTGcaaaatt
tgaacatttttattcataaTTGGAGGTTTTCACTAAGTTACCTAATAGTT
AATGCTAGACAAATTTATACGGTGGTTCGATTCGAGTTCTTCTTTTCGAA
GTGTTTCAAGTTTCTCGCGATAACTTTATTAAAAGATAATAACAGTGCCT
ATTTCGATGACATTTCAGTCTGGTAAAAAAGTTTAGGTATAAGTCCTACT
GAGGATTATTTTTTGACCGATCCAATGTTGGAAATAGAAATATATATAAT
CTACTCGAGCTTAACATGGGGATATTTGCTCTCCATCTTCGATTCTTTGG
ATATTCATGTGATTGAGACATGCGTGATAAAATTCTTACAGTCCGTCTCC
ACAGCGTAGTTTCTGAGAAATCCAAGCTATTAATCACGGTTCAAATCAGC
ACAATGGCTGTTacaaaaattcttataaaaatcaattttcgtagGTGGTT
GGTGTGCAGAGCATAAATACAGTACACAAGATGATAAAGATCAATTCATA
CAAATCGACCTCGGGAAACAGATGTCTGTGGATGGTGTAGCAACCCAGGG
TAGTCATTTATTAGAGAATTGGGTCAAAAAATATAATttgagATACAGCG
ATGATGGCAAGAGTTGGCAATACTACTCAAAGGTAAAGTTACAATActtc
tttgtttatttacagtaatctgaaaaatttgcaaatagcCAACTATTTTC
TATTAATACCAGTAGGATACCGTCAGACCATCTTCGCatgtgacggttcc
gtttcgctccgaaacgaggTTAAGTCATTTTATTGGTAAAATTCAAGTGT
TACATCACTTCttaccaatagaatggcttcattccgtttcggagcgaaac
ggaaccgtcacgtgcgaacatggccTCAGAgatgaaatttgttttcaatt
tctgaGGATataagattttgttttttttgaatcGTAGCACGGACAATGTG
ACTTTTCCACCCATTGGTGACAAGCGTTCAGACATCGTAATGAgcgaaaa
taattttagttttttctacttccggagaaattttggcccttttcattcaa
aaagtcaaGGGGCTGAAACACGGATTAACAATTAAAAGAGTAAGCTTAAT
GCAAATTAGCAATGTTATTAAttattgagaatttttttgtcgtttttatt
TAGAATCCACTCAATGGTAATAACGATCAAAACAGTATCCAGCGAAGTGT
GATTTCTCCACCAATCACAGGCCgttattttcaattaaatccAATCGAAT
GGAACCAAGGTGTTGAACCTGATAAACATGATATATGTATGAGGATTGCA
TTATTCAAGTGTAAAGGTACGGtttttctataaattttatTGAGGTTGAA
GTTTCGTCATCCGAAATTCGGAACTTAGGAAAGGTTGAAGAATCGCCTCT
GGCTTTTGGCTTGAAGttcaatgcaatttttctaATTATTTGATTATGTC
CTATATATAAGTCATCGGTGAATCAAGCCATCAAAGGTTTAGACAAAAAG
CCAAACACATAAAACTATGGAACCTGTAAAGTGTGTGACAAATTTAAACG
TCTAAAAAAACTTAACATTTACCGAATAAAAGCTATGTATGATTTTGCTT
TGGAATTTATCCAGCTGCTAAATAAAAGGCTAGTTCATCATCAACCGCCA
TCGACATGAATTGAATTCTTTGCAATCTTTTCGATCCCTAGAAACCCCAT
CTTCAGAAGCTGCTACATCACCTACCGTTAANGCCATAGACATGAATTGA
ATTCTTTGCAATCTTTTCGATCCCTAGAAACCCCATCTTCAGAAGCTGCT
ACATCACCTACCGTTAAACGGAGCTTTATACAACCACGACCACATCATCG
TAGCATCAATAACAAGCGTGGTGTTGTCATACGAGAACAAGCATGGTGGA
CACACTACCCAGAAGAAAAAGCTAAATTAACTTTATTGAACGTTAATAAA
ATTGTTGGTCCTAGTGAAGCCAGGATTCGAAGACAGGATGAGGATGTCTT
AACAGTTTTCCCAGGACATAAGAAAGGAcataaaagaattttttcaaaga
ttcgtAAAATTGCACATAATATTATGAAAAAGATTAGAGCCAAAAGCAAG
AAGCAAAGAATGAAATAAGAGACTGGATCTTATTTGGTTTTGCTATACAA
GAAGTATTCTTCTACATTTCAATCTACAGTGTATTTTGTCAATGGTTGCG
GATCACTGCCATAAGAAGAGTGCCTGGCATTTCTTCTAACAGATGCTGTT
CTTTTATGAAACAATTATTTATTTGAGCTTCAAAAACATTTACAATGCTT
TTACAATGTACATGATTTGAGTGTTATGGTCATTacaaaaagatatcaaa
cttCAAATTCGAGAACGTTTCTTTTGAAACTTCGATTGATTCTGTTAGCA
ATTAAAGCCAAAGTCCGCGTGCTATGACCTATTTTAATCATTTCGAAGAA
CTTCAACGTGAAGATTTGATAATATTTGATCTGAATTTCACTTCCTTATA
CAAACATTTCACATTCTCAGCTTGACAATCCATTCATTAAAGAAATCGGA
ATCGGCGGAGCTCGTCTCTGGTgacaaaaaaactgaatttttaaGTGAAT
ACCTACCCCTTGACCTATCCCTACTATATTTTTGCCATATATTTATGCCA
TATTTTTAAgcttgatttttcttgattttttagcTTTATATAATTTAATT
AGAAGAACTCATCAAAGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001319XLOC_001319Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002467-exon-sc0000020-1491911889:812530..812665TCONS_00002467-exon-sc0000020-1491911889:812530..812665Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1510915933:812530..812665TCONS_00002467-exon-sc0000020-1510915933:812530..812665Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1575043694:812530..812665TCONS_00002467-exon-sc0000020-1575043694:812530..812665Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1491911889:813444..813668TCONS_00002467-exon-sc0000020-1491911889:813444..813668Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1510915933:813444..813668TCONS_00002467-exon-sc0000020-1510915933:813444..813668Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1575043694:813444..813668TCONS_00002467-exon-sc0000020-1575043694:813444..813668Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1491911889:814606..814764TCONS_00002467-exon-sc0000020-1491911889:814606..814764Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1510915933:814606..814764TCONS_00002467-exon-sc0000020-1510915933:814606..814764Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1575043694:814606..814764TCONS_00002467-exon-sc0000020-1575043694:814606..814764Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1491911889:815227..815277TCONS_00002467-exon-sc0000020-1491911889:815227..815277Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1510915933:815227..815277TCONS_00002467-exon-sc0000020-1510915933:815227..815277Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1575043694:815227..815277TCONS_00002467-exon-sc0000020-1575043694:815227..815277Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1491911889:815373..815522TCONS_00002467-exon-sc0000020-1491911889:815373..815522Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1510915933:815373..815522TCONS_00002467-exon-sc0000020-1510915933:815373..815522Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1575043694:815373..815522TCONS_00002467-exon-sc0000020-1575043694:815373..815522Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1491911889:816324..816511TCONS_00002467-exon-sc0000020-1491911889:816324..816511Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1510915933:816324..816511TCONS_00002467-exon-sc0000020-1510915933:816324..816511Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1575043694:816324..816511TCONS_00002467-exon-sc0000020-1575043694:816324..816511Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1491911889:817033..817195TCONS_00002467-exon-sc0000020-1491911889:817033..817195Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1510915933:817033..817195TCONS_00002467-exon-sc0000020-1510915933:817033..817195Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1575043694:817033..817195TCONS_00002467-exon-sc0000020-1575043694:817033..817195Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1491911889:817657..818600TCONS_00002467-exon-sc0000020-1491911889:817657..818600Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1510915933:817657..818600TCONS_00002467-exon-sc0000020-1510915933:817657..818600Clytia hemisphaericaexon
TCONS_00002467-exon-sc0000020-1575043694:817657..818600TCONS_00002467-exon-sc0000020-1575043694:817657..818600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:812530..818600 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	9.09087e-10	0	0	0	0	6.93717e-07	4.98361e-08	0	0.080031	0.345043	0.00435904	0.00470357	0	0	0	0.295062	0	0.0231685	0.0971449
Blast
[Close]
BLAST of TCONS_00002467 vs. Swiss-Prot (Human)
Match: CNTP4 (Contactin-associated protein-like 4 OS=Homo sapiens GN=CNTNAP4 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 9.264e-18
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 1 
Query:  679 YAPPNARLNNEINGGGWCAEHKYSTQDDKDQFIQIDLGKQMSVDGVATQGSHLLENWVKKYNLRYSDDGKSWQYYSKN----PLNGNNDQNSIQRSVISPPITGRYFQLNPIEWNQGVEPDKHDICMRIALFKC 1068
            + P  ARLN     GGW          +K Q++QIDLG++M V  VATQG +   NWV  Y L +SD G +W+ Y +       +GN + +S+    + P I  R+ +  P+EWN      K  I MRI +F C
Sbjct:   54 HGPGFARLNRRDGAGGWSP-----LVSNKYQWLQIDLGERMEVTAVATQGGYGSSNWVTSYLLMFSDSGWNWKQYRQEDSIWGFSGNANADSVVYYRLQPSIKARFLRFIPLEWN-----PKGRIGMRIEVFGC 177
The following BLAST results are available for this feature:
BLAST of TCONS_00002467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNTP49.264e-1836.57Contactin-associated protein-like 4 OS=Homo sapien... [more]
back to top