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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002472 ID=TCONS_00002472|Name=TCONS_00002472|organism=Clytia hemisphaerica|type=transcript|length=1531bpRun BLAST on NCBI protein sequence of TCONS_00002472-protein >TCONS_00002472-protein ID=TCONS_00002472-protein|Name=TCONS_00002472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp MLPTPAKFHYVFNLRDLSRIWQGMLNAVSDVITETSTLLSQWQHECTRVIRun BLAST on NCBI transcript from alignment at sc0000020:882962..896347+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002472 ID=TCONS_00002472|Name=TCONS_00002472|organism=Clytia hemisphaerica|type=transcript|length=13386bp|location=Sequence derived from alignment at sc0000020:882962..896347+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000020:882962..896347+ >TCONS_00002472 ID=TCONS_00002472|Name=TCONS_00002472|organism=Clytia hemisphaerica|type=CDS|length=2904bp|location=Sequence derived from alignment at sc0000020:882962..896347+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00002472 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 337.421 bits (864), Expect = 6.084e-101 Identity = 166/293 (56.66%), Postives = 206/293 (70.31%), Query Frame = 1
Query: 625 GVIRCGHFCKERGFTDEVRTLANDLVACTRRLWQYTKVKMLPTPAKFHYVFNLRDLSRIWQGMLNAVSDVITETSTLLSQWQHECTRVICDRFVNEMDKSWFRKVAVQICDEEIGASHDL--SCLEEEAYFVDFLRDAPEPTGDEPDDADFEAPKIYEPIESMDSLRERLSHFMHQYNESVRGSGLDLVFFEDAITSLLKISRILATPRGNALLVGVGGSGKQSLTRLASFIAGYKTFQITITRSVSFRKSLLPIFKIFLRSFFLDYRCTVQSSRSLTFIYP*TKLYPPSLIE 1497
GVI GH+C +RGF++EVR LV TRRLWQ TK+KMLPTPAKFHYVFNLRDLSR+WQGMLN S+VI E + LL W+HEC RVI DRF D +WF K V + +EE G L C + YFVDFLRDAPE G+ ++AD E PKIYEPIES L+ERL+ F+ YNES+RG+G+D+VFF DA+ L+KISR++ TP+GNALLVGVGGSGKQSLTRLASFIAGY +FQIT+TRS + +L+ K+ YR Q + +TFI+ ++ S +E
Sbjct: 2742 GVIGVGHYCTQRGFSEEVRDSVTKLVPLTRRLWQMTKIKMLPTPAKFHYVFNLRDLSRVWQGMLNTTSEVIKEPNDLLKLWKHECKRVIADRFTVSSDVTWFDKALVSLVEEEFGEEKKLLVDC-GIDTYFVDFLRDAPEAAGETSEEADAETPKIYEPIESFSHLKERLNMFLQLYNESIRGAGMDMVFFADAMVHLVKISRVIRTPQGNALLVGVGGSGKQSLTRLASFIAGYVSFQITLTRSYN-TSNLMEDLKVL-------YRTAGQQGKGITFIFTDNEIKDESFLE 3025 HSP 2 Score: 173.711 bits (439), Expect = 8.189e-54 Identity = 77/105 (73.33%), Postives = 92/105 (87.62%), Query Frame = 2
Query: 329 TNFLIDTIAKQGKAALLIGEQGTAKTIMIQSYMKHYDPEVHLTKRFNFSSASTPMHFQRTIESYVDKRMGSTYGPVAGKQMSVFIDDINMPVINEWGDQVSFVVV 643
T+FLI TIAKQGKA LLIGEQGTAKT++I+ +M YDPE H+ K NFSSA+TP+ FQRTIESYVDKRMG+TYGP AGK+M+VFIDD+NMP+INEWGDQV+ +V
Sbjct: 2572 TDFLIQTIAKQGKAVLLIGEQGTAKTVIIKGFMSKYDPECHMIKSLNFSSATTPLMFQRTIESYVDKRMGTTYGPPAGKKMTVFIDDVNMPIINEWGDQVTNEIV 2676 HSP 3 Score: 56.225 bits (134), Expect = 8.189e-54 Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1
Query: 232 GKWCHWSSRVEEYIYPMDHNPEYSSILVPNVLN 330
G W HW++R +EY+YP D PEY SILVPNV N
Sbjct: 2537 GTWTHWNTRTQEYLYPSDTTPEYGSILVPNVDN 2569 The following BLAST results are available for this feature:
BLAST of TCONS_00002472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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