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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002482 ID=TCONS_00002482|Name=TCONS_00002482|organism=Clytia hemisphaerica|type=transcript|length=397bp CAAAGATATTTACGCTGTGCATGCAACAAATGGTTCCAATTACACTTGCA CTTGTACGATGTATAAAACATACAGTCTTTGTTCACATTCCTTGGCGACA GCTCATGATAACAAGTGTCTTCAAGATTTCCTGAAGGTTGCATTGAAGAA GCCTAATAATATTACGCCACCTGCTACCTCTGGAGCTAGCAAAAACGCCG GAAAGAAAACAAGCCAACGTTCATCACGAAAGAGAAAATCGACCTATACA AATGATGTTCCGCCCCGACGGGAAACTTTAGGGGAAATTCTTGCTCGAAC AGAAGCGGATGAAGAGATAGCAACAGGCAATTTCGGAGTGATCAATTCCA GCTCACTCAAAATGAAGATCGTTCGAGGCGGGCCAGTAAACGACCCA Run BLAST on NCBI protein sequence of TCONS_00002482-protein >TCONS_00002482-protein ID=TCONS_00002482-protein|Name=TCONS_00002482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
KDIYAVHATNGSNYTCTCTMYKTYSLCSHSLATAHDNKCLQDFLKVALKK PNNITPPATSGASKNAGKKTSQRSSRKRKSTYTNDVPPRRETLGEILART EADEEIATGNFGVINSSSLKMKIVRGGPVNDP Run BLAST on NCBI transcript from alignment at sc0000020:1053915..1054831+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002482 ID=TCONS_00002482|Name=TCONS_00002482|organism=Clytia hemisphaerica|type=transcript|length=917bp|location=Sequence derived from alignment at sc0000020:1053915..1054831+ (Clytia hemisphaerica) CAAAGATATTTACGCTGTGCATGCAACAAATGGTTCCAATTACACTTGCA
CTTGTACGATGTATAAAACATACAGTCTTTGTTCACATTCCTTGGCGACA
GCTCATGATAACAAGTGTCTTCAAGATTTCCTGAAGGTTGCATTGAAGAA
GCCTAATAATATTACGCCACCTGCTACCTCTGGAGCTAGCAAAAACGCCG
GAAAGAAAACAAGCCAACGTTCATCACGAAAGAGAAAATCGACCTATACA
AATGATGTTCCGCCCCGACGGGAAACTTTAGGGGAAATTCTTGCTCGAAC
AGAAGCGGATGAAGAGGTAAGTAGTCACTTAGTAGTAGTCATTACATAAT
AAATGCACTATAAGagttacaaaatagaaaataggaCCAATATGTTCATC
TtcccttttaagctgtttttatGGAGAGTGGgttattcttaacatattct
tagtTTTCAGCTAAGTTTCTCTTCAAACGAAAATTACCCTTTTGATAGGC
TCTTCCAGAAACGGTCTGTACATGGGGTACCATTTGCCAGGCAAATTAAC
AAACTGCATATGTGGTAGTTAAGGATTTGTTTTtcaagatagatttttaa
agatAATCCACTGTAAGAGTGGaccttttgataaatgcactgtaagggtt
taaATTTCAGTAAATCCAGCAAAAACCAAGAAATTTCGCCCGAAAAGTTT
GATATTccttttttgctctaaaagggttgaaaatttggggaaaatgcact
gtaagggtatgaaaaCCTTAAAAGGGGTTAAAAAATGACAGTATGAATGC
ATGAATTATTATATATCTCCTATTTCTAACTTCTAGATAGCAACAGGCAA
TTTCGGAGTGATCAATTCCAGCTCACTCAAAATGAAGATCGTTCGAGGCG
GGCCAGTAAACGACCCA Coding sequence (CDS) from alignment at sc0000020:1053915..1054831+ >TCONS_00002482 ID=TCONS_00002482|Name=TCONS_00002482|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000020:1053915..1054831+ (Clytia hemisphaerica) AAAGATATTTACGCTGTGCATGCAACAAATGGTTCCAATTACACTTGCAC TTGTACGATGTATAAAACATACAGTCTTTGTTCACATTCCTTGGCGACAG CTCATGATAACAAGTGTCTTCAAGATTTCCTGAAGGTTGCATTGAAGAAG CCTAATAATATTACGCCACCTGCTACCTCTGGAGCTAGCAAAAACGCCGG AAAGAAAACAAGCCAACGTTCATCACGAAAGAGAAAATCGACCTATACAA ATGATGTTCCGCCCCGACGGGAAACTTTAGGGGAAATTCTTGCTCGAACA GAAGCGGATGAAGAGATAGCAACAGGCAATTTCGGAGTGATCAATTCCAG CTCACTCAAAATGAAGATCGTTCGAGGCGGGCCAGTAAACGACCCAAAAG ATATTTACGCTGTGCATGCAACAAATGGTTCCAATTACACTTGCACTTGT ACGATGTATAAAACATACAGTCTTTGTTCACATTCCTTGGCGACAGCTCA TGATAACAAGTGTCTTCAAGATTTCCTGAAGGTTGCATTGAAGAAGCCTA ATAATATTACGCCACCTGCTACCTCTGGAGCTAGCAAAAACGCCGGAAAG AAAACAAGCCAACGTTCATCACGAAAGAGAAAATCGACCTATACAAATGA TGTTCCGCCCCGACGGGAAACTTTAGGGGAAATTCTTGCTCGAACAGAAG CGGATGAAGAGATAGCAACAGGCAATTTCGGAGTGATCAATTCCAGCTCA CTCAAAATGAAGATCGTTCGAGGCGGGCCAGTAAACGACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002482-exon-sc0000020-1491911889:1053915..1054230 | TCONS_00002482-exon-sc0000020-1491911889:1053915..1054230 | Clytia hemisphaerica | exon |
TCONS_00002482-exon-sc0000020-1510915933:1053915..1054230 | TCONS_00002482-exon-sc0000020-1510915933:1053915..1054230 | Clytia hemisphaerica | exon |
TCONS_00002482-exon-sc0000020-1575043694:1053915..1054230 | TCONS_00002482-exon-sc0000020-1575043694:1053915..1054230 | Clytia hemisphaerica | exon |
TCONS_00002482-exon-sc0000020-1491911889:1054751..1054831 | TCONS_00002482-exon-sc0000020-1491911889:1054751..1054831 | Clytia hemisphaerica | exon |
TCONS_00002482-exon-sc0000020-1510915933:1054751..1054831 | TCONS_00002482-exon-sc0000020-1510915933:1054751..1054831 | Clytia hemisphaerica | exon |
TCONS_00002482-exon-sc0000020-1575043694:1054751..1054831 | TCONS_00002482-exon-sc0000020-1575043694:1054751..1054831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000020 | supercontig | sc0000020:1053915..1054831 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
Term | Definition |
GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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