|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002482 ID=TCONS_00002482|Name=TCONS_00002482|organism=Clytia hemisphaerica|type=transcript|length=397bp
CAAAGATATTTACGCTGTGCATGCAACAAATGGTTCCAATTACACTTGCA
CTTGTACGATGTATAAAACATACAGTCTTTGTTCACATTCCTTGGCGACA
GCTCATGATAACAAGTGTCTTCAAGATTTCCTGAAGGTTGCATTGAAGAA
GCCTAATAATATTACGCCACCTGCTACCTCTGGAGCTAGCAAAAACGCCG
GAAAGAAAACAAGCCAACGTTCATCACGAAAGAGAAAATCGACCTATACA
AATGATGTTCCGCCCCGACGGGAAACTTTAGGGGAAATTCTTGCTCGAAC
AGAAGCGGATGAAGAGATAGCAACAGGCAATTTCGGAGTGATCAATTCCA
GCTCACTCAAAATGAAGATCGTTCGAGGCGGGCCAGTAAACGACCCA Run BLAST on NCBI protein sequence of TCONS_00002482-protein >TCONS_00002482-protein ID=TCONS_00002482-protein|Name=TCONS_00002482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
KDIYAVHATNGSNYTCTCTMYKTYSLCSHSLATAHDNKCLQDFLKVALKK
PNNITPPATSGASKNAGKKTSQRSSRKRKSTYTNDVPPRRETLGEILART
EADEEIATGNFGVINSSSLKMKIVRGGPVNDP Run BLAST on NCBI transcript from alignment at sc0000020:1053915..1054831+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002482 ID=TCONS_00002482|Name=TCONS_00002482|organism=Clytia hemisphaerica|type=transcript|length=917bp|location=Sequence derived from alignment at sc0000020:1053915..1054831+ (Clytia hemisphaerica)
CAAAGATATTTACGCTGTGCATGCAACAAATGGTTCCAATTACACTTGCA
CTTGTACGATGTATAAAACATACAGTCTTTGTTCACATTCCTTGGCGACA
GCTCATGATAACAAGTGTCTTCAAGATTTCCTGAAGGTTGCATTGAAGAA
GCCTAATAATATTACGCCACCTGCTACCTCTGGAGCTAGCAAAAACGCCG
GAAAGAAAACAAGCCAACGTTCATCACGAAAGAGAAAATCGACCTATACA
AATGATGTTCCGCCCCGACGGGAAACTTTAGGGGAAATTCTTGCTCGAAC
AGAAGCGGATGAAGAGGTAAGTAGTCACTTAGTAGTAGTCATTACATAAT
AAATGCACTATAAGagttacaaaatagaaaataggaCCAATATGTTCATC
TtcccttttaagctgtttttatGGAGAGTGGgttattcttaacatattct
tagtTTTCAGCTAAGTTTCTCTTCAAACGAAAATTACCCTTTTGATAGGC
TCTTCCAGAAACGGTCTGTACATGGGGTACCATTTGCCAGGCAAATTAAC
AAACTGCATATGTGGTAGTTAAGGATTTGTTTTtcaagatagatttttaa
agatAATCCACTGTAAGAGTGGaccttttgataaatgcactgtaagggtt
taaATTTCAGTAAATCCAGCAAAAACCAAGAAATTTCGCCCGAAAAGTTT
GATATTccttttttgctctaaaagggttgaaaatttggggaaaatgcact
gtaagggtatgaaaaCCTTAAAAGGGGTTAAAAAATGACAGTATGAATGC
ATGAATTATTATATATCTCCTATTTCTAACTTCTAGATAGCAACAGGCAA
TTTCGGAGTGATCAATTCCAGCTCACTCAAAATGAAGATCGTTCGAGGCG
GGCCAGTAAACGACCCA Coding sequence (CDS) from alignment at sc0000020:1053915..1054831+ >TCONS_00002482 ID=TCONS_00002482|Name=TCONS_00002482|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000020:1053915..1054831+ (Clytia hemisphaerica)
AAAGATATTTACGCTGTGCATGCAACAAATGGTTCCAATTACACTTGCAC
TTGTACGATGTATAAAACATACAGTCTTTGTTCACATTCCTTGGCGACAG
CTCATGATAACAAGTGTCTTCAAGATTTCCTGAAGGTTGCATTGAAGAAG
CCTAATAATATTACGCCACCTGCTACCTCTGGAGCTAGCAAAAACGCCGG
AAAGAAAACAAGCCAACGTTCATCACGAAAGAGAAAATCGACCTATACAA
ATGATGTTCCGCCCCGACGGGAAACTTTAGGGGAAATTCTTGCTCGAACA
GAAGCGGATGAAGAGATAGCAACAGGCAATTTCGGAGTGATCAATTCCAG
CTCACTCAAAATGAAGATCGTTCGAGGCGGGCCAGTAAACGACCCAAAAG
ATATTTACGCTGTGCATGCAACAAATGGTTCCAATTACACTTGCACTTGT
ACGATGTATAAAACATACAGTCTTTGTTCACATTCCTTGGCGACAGCTCA
TGATAACAAGTGTCTTCAAGATTTCCTGAAGGTTGCATTGAAGAAGCCTA
ATAATATTACGCCACCTGCTACCTCTGGAGCTAGCAAAAACGCCGGAAAG
AAAACAAGCCAACGTTCATCACGAAAGAGAAAATCGACCTATACAAATGA
TGTTCCGCCCCGACGGGAAACTTTAGGGGAAATTCTTGCTCGAACAGAAG
CGGATGAAGAGATAGCAACAGGCAATTTCGGAGTGATCAATTCCAGCTCA
CTCAAAATGAAGATCGTTCGAGGCGGGCCAGTAAACGACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002482-exon-sc0000020-1491911889:1053915..1054230 | TCONS_00002482-exon-sc0000020-1491911889:1053915..1054230 | Clytia hemisphaerica | exon |
| TCONS_00002482-exon-sc0000020-1510915933:1053915..1054230 | TCONS_00002482-exon-sc0000020-1510915933:1053915..1054230 | Clytia hemisphaerica | exon |
| TCONS_00002482-exon-sc0000020-1575043694:1053915..1054230 | TCONS_00002482-exon-sc0000020-1575043694:1053915..1054230 | Clytia hemisphaerica | exon |
| TCONS_00002482-exon-sc0000020-1491911889:1054751..1054831 | TCONS_00002482-exon-sc0000020-1491911889:1054751..1054831 | Clytia hemisphaerica | exon |
| TCONS_00002482-exon-sc0000020-1510915933:1054751..1054831 | TCONS_00002482-exon-sc0000020-1510915933:1054751..1054831 | Clytia hemisphaerica | exon |
| TCONS_00002482-exon-sc0000020-1575043694:1054751..1054831 | TCONS_00002482-exon-sc0000020-1575043694:1054751..1054831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:1053915..1054831 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
|
