|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002483 ID=TCONS_00002483|Name=TCONS_00002483|organism=Clytia hemisphaerica|type=transcript|length=2093bp
tataaatggttgttttttaattcaaaaacattattaatagcaatgcccac
catcaagcaagttttaattttcaataaaattgatttttgaagccagaact
attgactgactgatttttttcatttttcttctcgcattgctatctaactt
tcatcatcaggtaggtccatttacATGTTGCTTGTTACATTTAAAAGTAT
CAAGAATACCATCAAATCTAATAGAATAGGTATCCAGACCTTTTTATATC
AAGGTTTTGCTCTTCAATGGAAGGAAAGGGGAGAAGGTCTTTGACCATTA
TAGTGGGGGAGTTTCAACttcttttcatttaattttcagTTGAGGAATGA
AAAAATGGGATACGAATTAACAAGATTTGAATGTGATGTAGACGAGGAAC
TTATATGTCCTATTTGCAGTGGTGTTTTGGAAGAACCAGTACAAGCACCT
ATCTGTGAACATGCATTTTGTACAGCATGTATTAATGAATGGCTTAATCT
ACAGGAAACATGTCCAGTTGATAGACAATCTATTACTAGTCCTGAACTAA
AACCAGTACCACGAATCCTTAAAAATCTGTTGGCACGATTGACTATAAAG
TGTACTAATGCAGAATTTGGATGTGAAAGCTTAATCAAGTTGGACGTGTT
GAACCACCATTTATTGGAATGTAATCATAATCCAAAGCGACCGGTTCAAT
GTGATAAGGGATGTGGTTTGATTGTACCACTGGATGAGGTTTCACAACAT
AATTGCGTTCGAGAGTTACATTCTATCATTCATTCACAAGGAGAACAAAT
AACAGAACTCAAAGAAAAAGCTATTGATTTCCAACATCAAATTAGTGAAG
TCAAACAGCAAGTGACTATTCTAACAGATGTGATACGCAGTTTTCGGCTC
TCTGCCAGTAATTTGGCCTTAGGCCAACCAGTGAACCGTAGTTACGCTGA
TAGTACTTCGGATGAGGTTATACAATGGATACAAACATTACCTCAAGCTA
GGGTTACACGATGGGGTGGTATGATCTCAACCCCTGATGCTGTACTCCAA
GCAGTAATCAGAAGGTCACTCTCAGATAGTGGTTGCCCACCTTACATTCT
TGATCCATTGATGGAGAACGCACATGAGAGACGTTGGTCACAAGGGCTGA
GTACATTGGAAACTAGACAAATGAACAGAAGACGTTATGAACAATATATA
GCACGTCGTATACCTGGAAAACAAGCTGTGGTAGTCATGGCATGTGAGAA
CCGACATATGGGAGATTTCATGGTAATGGAGCCAGGCATTGTTATGATCT
TTGCTCATGGGATTGAATGACTTTTCTCGTTTATATGGTGGGGCTAGAAG
TATTTTTTGTGACCGCTAAGACCGCTACAGTTAAGCAATATTCTTTTTGG
ATCTGTATGTTTTTGGATTGAATACAGATGCAGTACTGCTAATTGTATGG
TAGGGAATATGGATGTATTACATTTTGGTATTTAATTGGTTAGTGTCTGA
CACCTTGCACATTCAAGTATTTGTTGGTGAGCTTTTTAAACTATCGAGAA
CAAACTAGTCGAGTTAAGTTTTgtttaaatttcgaaatttgaaagttttt
aaacatGGATATACACaggcatttttttctttgtttgttttatacTGAGC
GTTGAGTTGAGCatagtgaaaaatgaaaatattgaaaaaataattttggg
caaaaaatggTTTTAGTCTATGACCttcaaaatttgttattttccTAATT
GCAatgtctttctttgttttttcaacgGTTCTGAGTTTTTTCTGCAATAA
CGGTATTTAATttggaaatttcgattttttgaaatgaagtCCTGTAGTAT
CTAACCCTTGGGGACCATTTTCTTCGAAATTTATGCATCAGGATCTATTA
TAAGAAGTTTAGAGGAtagcaaaaataattaatttttttattttgtattg
tacattattttatttttagtttttatagaTCAGAGCGAGTGGCCATaaat
agattttaaaaagattttcaaaccaAGTTCAAAGTTTATTTGGTGTCATA
AGCCTTCagccattttttttgttttcagcatTTTATAGTGGCC Run BLAST on NCBI transcript from alignment at sc0000020:5312..7404- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002483 ID=TCONS_00002483|Name=TCONS_00002483|organism=Clytia hemisphaerica|type=transcript|length=2093bp|location=Sequence derived from alignment at sc0000020:5312..7404- (Clytia hemisphaerica)
TATAAATGGTTGTTTTTTAATTCAAAAACATTATTAATAGCAATGCCCAC
CATCAAGCAAGTTTTAATTTTCAATAAAATTGATTTTTGAAGCCAGAACT
ATTGACTGACTGATTTTTTTCATTTTTCTTCTCGCATTGCTATCTAACTT
TCATCATCAGGTAGGTCCATTTACATGTTGCTTGTTACATTTAAAAGTAT
CAAGAATACCATCAAATCTAATAGAATAGGTATCCAGACCTTTTTATATC
AAGGTTTTGCTCTTCAATGGAAGGAAAGGGGAGAAGGTCTTTGACCATTA
TAGTGGGGGAGTTTCAACTTCTTTTCATTTAATTTTCAGTTGAGGAATGA
AAAAATGGGATACGAATTAACAAGATTTGAATGTGATGTAGACGAGGAAC
TTATATGTCCTATTTGCAGTGGTGTTTTGGAAGAACCAGTACAAGCACCT
ATCTGTGAACATGCATTTTGTACAGCATGTATTAATGAATGGCTTAATCT
ACAGGAAACATGTCCAGTTGATAGACAATCTATTACTAGTCCTGAACTAA
AACCAGTACCACGAATCCTTAAAAATCTGTTGGCACGATTGACTATAAAG
TGTACTAATGCAGAATTTGGATGTGAAAGCTTAATCAAGTTGGACGTGTT
GAACCACCATTTATTGGAATGTAATCATAATCCAAAGCGACCGGTTCAAT
GTGATAAGGGATGTGGTTTGATTGTACCACTGGATGAGGTTTCACAACAT
AATTGCGTTCGAGAGTTACATTCTATCATTCATTCACAAGGAGAACAAAT
AACAGAACTCAAAGAAAAAGCTATTGATTTCCAACATCAAATTAGTGAAG
TCAAACAGCAAGTGACTATTCTAACAGATGTGATACGCAGTTTTCGGCTC
TCTGCCAGTAATTTGGCCTTAGGCCAACCAGTGAACCGTAGTTACGCTGA
TAGTACTTCGGATGAGGTTATACAATGGATACAAACATTACCTCAAGCTA
GGGTTACACGATGGGGTGGTATGATCTCAACCCCTGATGCTGTACTCCAA
GCAGTAATCAGAAGGTCACTCTCAGATAGTGGTTGCCCACCTTACATTCT
TGATCCATTGATGGAGAACGCACATGAGAGACGTTGGTCACAAGGGCTGA
GTACATTGGAAACTAGACAAATGAACAGAAGACGTTATGAACAATATATA
GCACGTCGTATACCTGGAAAACAAGCTGTGGTAGTCATGGCATGTGAGAA
CCGACATATGGGAGATTTCATGGTAATGGAGCCAGGCATTGTTATGATCT
TTGCTCATGGGATTGAATGACTTTTCTCGTTTATATGGTGGGGCTAGAAG
TATTTTTTGTGACCGCTAAGACCGCTACAGTTAAGCAATATTCTTTTTGG
ATCTGTATGTTTTTGGATTGAATACAGATGCAGTACTGCTAATTGTATGG
TAGGGAATATGGATGTATTACATTTTGGTATTTAATTGGTTAGTGTCTGA
CACCTTGCACATTCAAGTATTTGTTGGTGAGCTTTTTAAACTATCGAGAA
CAAACTAGTCGAGTTAAGTTTTGTTTAAATTTCGAAATTTGAAAGTTTTT
AAACATGGATATACACAGGCATTTTTTTCTTTGTTTGTTTTATACTGAGC
GTTGAGTTGAGCATAGTGAAAAATGAAAATATTGAAAAAATAATTTTGGG
CAAAAAATGGTTTTAGTCTATGACCTTCAAAATTTGTTATTTTCCTAATT
GCAATGTCTTTCTTTGTTTTTTCAACGGTTCTGAGTTTTTTCTGCAATAA
CGGTATTTAATTTGGAAATTTCGATTTTTTGAAATGAAGTCCTGTAGTAT
CTAACCCTTGGGGACCATTTTCTTCGAAATTTATGCATCAGGATCTATTA
TAAGAAGTTTAGAGGATAGCAAAAATAATTAATTTTTTTATTTTGTATTG
TACATTATTTTATTTTTAGTTTTTATAGATCAGAGCGAGTGGCCATAAAT
AGATTTTAAAAAGATTTTCAAACCAAGTTCAAAGTTTATTTGGTGTCATA
AGCCTTCAGCCATTTTTTTTGTTTTCAGCATTTTATAGTGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002483-exon-sc0000020-1575043694:5312..7404 | TCONS_00002483-exon-sc0000020-1575043694:5312..7404 | Clytia hemisphaerica | exon |
| TCONS_00002483-exon-sc0000020-1510915933:5312..7404 | TCONS_00002483-exon-sc0000020-1510915933:5312..7404 | Clytia hemisphaerica | exon |
| TCONS_00002483-exon-sc0000020-1491911889:5312..7404 | TCONS_00002483-exon-sc0000020-1491911889:5312..7404 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:5312..7404 - |
Blast
BLAST of TCONS_00002483 vs. Swiss-Prot (Human)
Match: RNF41 (E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1 SV=2) HSP 1 Score: 413.305 bits (1061), Expect = 1.161e-138 Identity = 190/321 (59.19%), Postives = 249/321 (77.57%), Query Frame = 1
Query: 355 MGYELTRFECDVDEELICPICSGVLEEPVQAPICEHAFCTACINEWLNLQETCPVDRQSITSPELKPVPRILKNLLARLTIKCTNAEFGCESLIKLDVLNHHLLECNHNPKRPVQCDKGCGLIVPLDEVSQHNCVRELHSIIHSQGEQITELKEKAIDFQHQISEVKQQVTILTDVIRSFRLSASNLALGQPVNRSYADSTSDEVIQWIQTLPQARVTRWGGMISTPDAVLQAVIRRSLSDSGCPPYILDPLMENAHERRWSQGLSTLETRQMNRRRYEQYIARRIPGKQAVVVMACENRHMGDFMVMEPGIVMIFAHGIE 1317
MGY++TRF+ DVDE+LICPICSGVLEEPVQAP CEHAFC ACI +W + Q+TCPVDR +T L+PVPRI++N+L++L I C NA FGC ++++LD L HL +C HNPKRPV C++GCGL +P DE+ HNC++ L S++ Q +I EL++ + + +HQ++E K+ + +L +R+ R NL Q + + +E+++W+ +L ARVTRWGGMISTPDAVLQAVI+RSL +SGCP I++ L+ENAHER W QGL+TLETRQMNRR YE Y+A+RIPGKQAVVVMACEN+HMGD MV EPG+VMIFAHG+E
Sbjct: 1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNL---QNLEETI---EYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVE 315
The following BLAST results are available for this feature:
|
