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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002498 ID=TCONS_00002498|Name=TCONS_00002498|organism=Clytia hemisphaerica|type=transcript|length=125bp
AGAAAATGCGAATCTGGAAGCTGCTATAATAGcgGAAAAcacttatgaaa
aaaatgttgtAGTCCCCTGTGACTTCGGTGACCACCACTTTTCTGTAAAA
GcgGATGCTCGAACAAAACAATTTC Run BLAST on NCBI transcript from alignment at sc0000020:342073..345358- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002498 ID=TCONS_00002498|Name=TCONS_00002498|organism=Clytia hemisphaerica|type=transcript|length=3286bp|location=Sequence derived from alignment at sc0000020:342073..345358- (Clytia hemisphaerica)
AGAAAATGCGAATCTGGAAGCTGCTATAATAGGTATTTTGCATTATCACT
GGAAATCCAAATAGATGATACGATTCAAGTCCTGCACAACCTTTCTTCTG
TCAACTCTACTCGCAACTGTATACCCGAAAATAATTCGTAATTAAAACGG
TTTCTGGAAACCTGACAGCCAAACTAAAAAAAGATCACGGGGAAGGGAGG
TACTTAGGCAAAAATGGGTGCTGTGTATGTGCGTGCCTTAAGCCTCGGTT
TTTTTCACCTTCTAAAGTCTCTGTAAGGGTTTGTCAAAACACCCTCTCTA
AGGGTTGGAAAATTCACAATTTTTAGGAAATCTTTTAGAGTTAGAGTGAA
TAAATTGTAACAAAGTCTCTAAGAATAAGGAATTTTTAAAAAATTAAAGA
AATTTAACAAAGTCTCTTAGTGTCACCTTTTCGGCATAAATCAGTGTCTC
TAGGGGTCAGGGTTTGGAGGTCCGGCACGCACGTACCTAGCATCCCTCAA
CCCTAGTACCCCACCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCCCCCCCCC
CCCCCCCTATCGGGAAAAAAAAAGTTGTATTGATAATGTTTGTAGCGCAA
ATAAATCAACTTCTTTTGTAATGAATATTCTATAAGGGCTCTGACCATAG
TCGGAAAATTGATTTTAGTATTTGAACATAAAAGTTATGTTTTTAGATTC
TTTAACACTTTCAACAAAGAATTGCCTTTATAAATTGTTTTTTAATCAAA
TCCCTTAAGAGTAATTAAGAACTTAATTGCAAAAATGACGTTATGAACTT
TAAAAAGACGTTAATAATATGTTGCATTACCTTCTTTTATAAAAAGTGCT
AAGTTTTAATAGGTAATTAACCTTTTTGTTTCAAAGTTTTTTCAAACTGT
CCGCAAAGAATTGAACTGTTATAAATTTTTCNTTAATCAAATCCCTTAAG
AGTAATTAAGAACTTAATTGCAAAAATGACGTTATGAACTTTAAAAAGAC
GTTAATAATATGTTGCATTACCTTGTTTTATAAAAAGTGCTAAGTTTTAA
TAGGTAATTAACCTTTTTGTTTCAAAGTTTTTTCAAACTGTCCGCAAAGA
ATTGAACTGTTATAAATTTTTTGGAAAATTTTTCTAAATTAATGCATCAA
AAGTTATGGCTGTTTTACTAAGAAAAATTGGGATGGAAAATTGGTCAAGA
AGCACTATTTTCAAGATTTTGAAGCAAATAAGCTTTTTGAAAAATGTTCC
GAAAAATTGCTTTTAGTTCGATTAAAAATACACCATCTACCACAAAAAAA
AATTTTTTCCTTGCCGAAACTAAGCTCTTCAAAGTTGAAATACTCTTCTT
TGCAAAAGTCTTCATTTTCTTCTTCATCAAATTTTTTTATTGCAATTTTA
AAACTTCAGACTCATGGATAATTGGCCTAACAGAAAATGTATAACATGTC
ACAGTTTTGTGGGCTACATCAAGTAGGACTTTATATTTTGTAAGTGGCAA
ATATTAAAAATTCACTATGGACAGAGCCCTTAAGAATCATTTCTTTTGTC
CACTCGACAATATTCATCTATCTTCTTTCAAATCTGAACCTGCCGATGAA
ACATTGGTTTTTAATGGTTTTAATGGTCTTTCCTGCCTTTTCTCCCTGTT
TTTTCGACATTGATATGGGCTATCAGTGGGAAAGTAAGCATGATTTTCGG
ATTTTTTGTTAAAAAAATTTCTTTAGGCTCATTAGGCCTCATTGTATTTA
ATTGCAATTGAAAAAAAAAGAAGATTTTTTTGTACTAAAAAGCTTTCCTT
CATGACTTACTCTAGTTGAAAATATTTGGAACCAATTTATATTTTCAATC
AATATGTCTATTGAAGAAAAAACACTGAATTTTTATAATTTTTTTGCTAA
AACGCAGAAAAAAACACAAAATATCTTTAGCCATCGATATATTTTGCTTG
TTCATTTCGTTGCACTGTTATTATTTGTCCACGGGATTCCATTCATCTCT
CCATTCATTGTTTTGTTTATATTTTTAGCGGAAAACACTTATGAAAAAAA
TGTTGTAGTCCCCTGTGACTTCGGTGACCACCACTTTTCTGTAAAAGGTA
AGATTTGCTTATCCATTGAAGAATATAAAATAATCACAACGTTTGAATCA
AGTTCGACCAGGATGGTGATGAACAATTAAAAGATATTTTTCTTGTTATA
TGTAACACTTTTCCAATAGTTGTCTACTCCGATATAATTTTAATTACCCT
GAGTATCAGAGGTCAAGTTTTCAAATAGAAAATATTTATTCGCGCTGTGA
TACTCACGGTAAATTTTAATGGAGTTTGGAAAGGTAGATCTACTCTTAGG
CTCCAAATAAACGGGTGGTTTGAATAAACGGGGGGGGGTTAGAAAATTTT
CAAAATCTTAATAAACGGGGGGATCTAAACACCGGGGGGGTTGGAAATTG
TAATTACGAAAACCCAAAAATAAAGTAAATATAGGCTAAAATCAGGCTAT
TTTAGAGCAGAATAAGGGATTTTCTCTCTAAAAGTTGAAAAAATTTTGAA
AATTAATAAACGGGTGGGGGGTCCTAATAAGCCCCGGGGTGTTGGAAAAT
TGTCGAAAAATTAACAAGCGGGGGGCCCGTTTATTTGGAACCTAAGAGTA
CTGTATTAATTTATCAGAGTTTTTGATTTTTCTAGAAAAGCGATGCATTG
TAAGATTGTTTCGGGAGTACTACAATAAAATTCCCTCGAGGATTTCTATT
GTAATATGGAAACAAACCATGGTTGCACTTTGTCTTTAAACTTCACTTCT
TCTTCGCTATTAGCACTTGGAAATTAGAACGTTCATCTGATATACTGAGC
AAATAACAGTTGAAAATTTTTGCAGTCGAAATACTTTTCCTCACGACATA
GGTCCAAAATGAAATGTAAAAATTCTTAGTGACGGTATTTGGAGTTAATT
GTGTCCGGTATTCCGGTAATTCGGGAAAAAATGCCGGTATTTCGGAATTC
AGTAACCCTTGAACTCTCCCCCCCCCTAATACTCCCAAAACAATCCCACA
ATACATCGGTTTTTTAGAAAAATAAAAAACTCCGATAAGGTCTATTATAT
GGTGATAAGGTATGAATAATTAACCTACTTTTTATTTACCCAACTGTAAT
TGCATAGACTCTTTGTTTCAACTGAGTAACTATTAGTTCTATTTCTTTTT
CATTTTTTTTAGCGGATGCTCGAACAAAACAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002498-exon-sc0000020-1575043694:345327..345358 | TCONS_00002498-exon-sc0000020-1575043694:345327..345358 | Clytia hemisphaerica | exon |
| TCONS_00002498-exon-sc0000020-1575043694:343212..343280 | TCONS_00002498-exon-sc0000020-1575043694:343212..343280 | Clytia hemisphaerica | exon |
| TCONS_00002498-exon-sc0000020-1575043694:342073..342096 | TCONS_00002498-exon-sc0000020-1575043694:342073..342096 | Clytia hemisphaerica | exon |
| TCONS_00002498-exon-sc0000020-1510915933:345327..345358 | TCONS_00002498-exon-sc0000020-1510915933:345327..345358 | Clytia hemisphaerica | exon |
| TCONS_00002498-exon-sc0000020-1510915933:343212..343280 | TCONS_00002498-exon-sc0000020-1510915933:343212..343280 | Clytia hemisphaerica | exon |
| TCONS_00002498-exon-sc0000020-1510915933:342073..342096 | TCONS_00002498-exon-sc0000020-1510915933:342073..342096 | Clytia hemisphaerica | exon |
| TCONS_00002498-exon-sc0000020-1491911889:345327..345358 | TCONS_00002498-exon-sc0000020-1491911889:345327..345358 | Clytia hemisphaerica | exon |
| TCONS_00002498-exon-sc0000020-1491911889:343212..343280 | TCONS_00002498-exon-sc0000020-1491911889:343212..343280 | Clytia hemisphaerica | exon |
| TCONS_00002498-exon-sc0000020-1491911889:342073..342096 | TCONS_00002498-exon-sc0000020-1491911889:342073..342096 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:342073..345358 - |
Blast
The following BLAST results are available for this feature:
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